FFCP PHASE1:Hg19::chr12:52908533..52908575,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-151bp_to_CU687195_5end | |association_with_transcript=-151bp_to_CU687195_5end | ||
|cluster_id=chr12:52908533..52908575,+ | |||
|coexpression_cluster_id=C207 | |coexpression_cluster_id=C207 | ||
|description=CAGE_peak_1_at_CU687195_5end | |description=CAGE_peak_1_at_CU687195_5end | ||
|id=chr12:52908533..52908575,+ | |id=chr12:52908533..52908575,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.54e-29!43;CL:0000223!1.41e-19!59;CL:0000066!1.27e-18!254;CL:0002368!5.29e-18!13;CL:0002251!1.32e-16!21;CL:0002159!1.36e-15!13;CL:0000244!9.16e-11!4;CL:0000731!9.16e-11!4;CL:0000076!1.29e-10!62;CL:0002202!3.80e-10!9;CL:0002632!3.80e-10!9;CL:0002328!9.20e-09!3;CL:0002166!1.02e-08!3;CL:0000349!1.05e-08!3;CL:0002577!1.05e-08!3;CL:0000068!1.38e-08!3;CL:0000069!1.38e-08!3;CL:0000307!1.38e-08!3;CL:0000377!1.38e-08!3;CL:0002621!5.01e-08!3;CL:0000240!1.06e-07!6;CL:0000311!1.06e-07!6;CL:0000079!1.06e-07!6;CL:0000237!1.06e-07!6;CL:0000036!1.06e-07!6;CL:0000357!1.06e-07!6;CL:0000114!1.06e-07!6;CL:0002077!1.72e-07!33;CL:0002327!6.78e-07!4 | |ontology_enrichment_celltype=CL:0002076!1.54e-29!43;CL:0000223!1.41e-19!59;CL:0000066!1.27e-18!254;CL:0002368!5.29e-18!13;CL:0002251!1.32e-16!21;CL:0002159!1.36e-15!13;CL:0000244!9.16e-11!4;CL:0000731!9.16e-11!4;CL:0000076!1.29e-10!62;CL:0002202!3.80e-10!9;CL:0002632!3.80e-10!9;CL:0002328!9.20e-09!3;CL:0002166!1.02e-08!3;CL:0000349!1.05e-08!3;CL:0002577!1.05e-08!3;CL:0000068!1.38e-08!3;CL:0000069!1.38e-08!3;CL:0000307!1.38e-08!3;CL:0000377!1.38e-08!3;CL:0002621!5.01e-08!3;CL:0000240!1.06e-07!6;CL:0000311!1.06e-07!6;CL:0000079!1.06e-07!6;CL:0000237!1.06e-07!6;CL:0000036!1.06e-07!6;CL:0000357!1.06e-07!6;CL:0000114!1.06e-07!6;CL:0002077!1.72e-07!33;CL:0002327!6.78e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002368;3.59e-24;13!CL:0002076;6.13e-24;42!CL:0002159;1.41e-23;14!CL:0002202;2.58e-16;9!CL:0002632;2.58e-16;9!CL:0002328;2.13e-13;3!CL:0002166;2.52e-13;3!CL:0002577;2.57e-13;3!CL:0000307;3.91e-13;3!CL:0002621;3.12e-12;3!CL:0000240;4.09e-12;6!CL:0000311;4.09e-12;6!CL:0000079;4.09e-12;6!CL:0000237;4.09e-12;6!CL:0002251;8.46e-12;20!CL:0002077;2.92e-11;34!CL:0002327;1.36e-10;4!CL:0000244;2.44e-10;4!CL:0000731;2.44e-10;4!CL:0000575;4.77e-10;2!CL:0000312;1.31e-08;5!CL:0000622;5.20e-08;5!CL:0000362;6.56e-08;9!CL:0000154;9.68e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.66e-30,42;CL:0002368,3.70e-24,13;CL:0002159,1.19e-23,14;CL:0000066,1.58e-21,253;CL:0000223,7.96e-21,58;CL:0002202,2.41e-16,9;CL:0002632,2.41e-16,9;CL:0002328,1.96e-13,3;CL:0002166,2.32e-13,3;CL:0002577,2.42e-13,3;CL:0000068,3.83e-13,3;CL:0000069,3.83e-13,3;CL:0000307,3.83e-13,3;CL:0000377,3.83e-13,3;CL:0002077,5.30e-13,34;CL:0002621,3.19e-12,3;CL:0000240,3.98e-12,6;CL:0000311,3.98e-12,6;CL:0000079,3.98e-12,6;CL:0000237,3.98e-12,6;CL:0000036,3.98e-12,6;CL:0000357,3.98e-12,6;CL:0000114,3.98e-12,6;CL:0002251,9.07e-12,20;CL:0002327,1.30e-10,4;CL:0000244,2.60e-10,4;CL:0000731,2.60e-10,4;CL:0000575,4.56e-10,2;CL:0000312,1.27e-08,5;CL:0002321,1.37e-08,250;CL:0000622,5.33e-08,5;CL:0000362,6.16e-08,9;CL:0000076,4.79e-07,63;CL:0000154,9.88e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000377;3.91e-13;3!CL:0000357;4.09e-12;6!CL:0000114;4.09e-12;6!CL:0000223;1.12e-11;58 | |||
|ontology_enrichment_disease=DOID:1749!8.60e-18!14 | |ontology_enrichment_disease=DOID:1749!8.60e-18!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!5.43e-16!169;UBERON:0000925!5.43e-16!169;UBERON:0006595!5.43e-16!169;UBERON:0001004!1.98e-14!72;UBERON:0000161!1.88e-13!35;UBERON:0000365!1.86e-12!5;UBERON:0005631!2.04e-12!14;UBERON:0000158!2.04e-12!14;UBERON:0003729!5.73e-12!5;UBERON:0000166!9.60e-12!21;UBERON:0001987!1.88e-10!4;UBERON:0004340!1.88e-10!4;UBERON:0005910!2.60e-10!6;UBERON:0000974!2.78e-10!10;UBERON:0000165!5.35e-10!28;UBERON:0000930!5.35e-10!28;UBERON:0003102!1.11e-09!95;UBERON:0003343!1.58e-09!4;UBERON:0004785!1.58e-09!4;UBERON:0000065!5.12e-09!53;UBERON:0004815!9.20e-09!3;UBERON:0002031!9.20e-09!3;UBERON:0000344!1.10e-08!12;UBERON:0003124!1.14e-08!7;UBERON:0007196!3.65e-08!14;UBERON:0001558!3.65e-08!14;UBERON:0001949!5.01e-08!3;UBERON:0001007!2.37e-07!155;UBERON:0001555!2.37e-07!155;UBERON:0007026!2.37e-07!155;UBERON:0000077!3.41e-07!130;UBERON:0006562!6.26e-07!11;UBERON:0001444!6.42e-07!48;UBERON:0001911!6.78e-07!4;UBERON:0005333!6.78e-07!4;UBERON:0008425!6.78e-07!4;UBERON:0005311!6.78e-07!4;UBERON:0004923!8.61e-07!57 | |ontology_enrichment_uberon=UBERON:0004119!5.43e-16!169;UBERON:0000925!5.43e-16!169;UBERON:0006595!5.43e-16!169;UBERON:0001004!1.98e-14!72;UBERON:0000161!1.88e-13!35;UBERON:0000365!1.86e-12!5;UBERON:0005631!2.04e-12!14;UBERON:0000158!2.04e-12!14;UBERON:0003729!5.73e-12!5;UBERON:0000166!9.60e-12!21;UBERON:0001987!1.88e-10!4;UBERON:0004340!1.88e-10!4;UBERON:0005910!2.60e-10!6;UBERON:0000974!2.78e-10!10;UBERON:0000165!5.35e-10!28;UBERON:0000930!5.35e-10!28;UBERON:0003102!1.11e-09!95;UBERON:0003343!1.58e-09!4;UBERON:0004785!1.58e-09!4;UBERON:0000065!5.12e-09!53;UBERON:0004815!9.20e-09!3;UBERON:0002031!9.20e-09!3;UBERON:0000344!1.10e-08!12;UBERON:0003124!1.14e-08!7;UBERON:0007196!3.65e-08!14;UBERON:0001558!3.65e-08!14;UBERON:0001949!5.01e-08!3;UBERON:0001007!2.37e-07!155;UBERON:0001555!2.37e-07!155;UBERON:0007026!2.37e-07!155;UBERON:0000077!3.41e-07!130;UBERON:0006562!6.26e-07!11;UBERON:0001444!6.42e-07!48;UBERON:0001911!6.78e-07!4;UBERON:0005333!6.78e-07!4;UBERON:0008425!6.78e-07!4;UBERON:0005311!6.78e-07!4;UBERON:0004923!8.61e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.13e-13;3!UBERON:0002031;2.13e-13;3!UBERON:0001949;3.12e-12;3!UBERON:0000486;9.44e-12;12!UBERON:0001911;1.36e-10;4!UBERON:0001708;4.15e-10;4!UBERON:0008895;4.15e-10;4!UBERON:0001987;4.22e-10;4!UBERON:0007196;1.56e-09;15!UBERON:0001558;1.56e-09;15!UBERON:0000365;2.37e-08;5!UBERON:0002185;3.27e-08;5!UBERON:0011159;3.61e-08;5!UBERON:0000165;4.55e-08;28!UBERON:0003729;1.58e-07;13!UBERON:0000161;4.97e-07;19!UBERON:0000166;4.97e-07;19!UBERON:0005910;5.07e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.96e-13,3;UBERON:0002031,1.96e-13,3;UBERON:0004119,3.16e-12,160;UBERON:0000925,3.16e-12,160;UBERON:0006595,3.16e-12,160;UBERON:0001949,3.19e-12,3;UBERON:0003102,3.66e-12,99;UBERON:0001911,1.30e-10,4;UBERON:0005333,1.30e-10,4;UBERON:0008425,1.30e-10,4;UBERON:0005311,1.30e-10,4;UBERON:0001004,2.20e-10,74;UBERON:0001708,3.91e-10,4;UBERON:0008895,3.91e-10,4;UBERON:0001987,4.03e-10,4;UBERON:0004340,4.03e-10,4;UBERON:0000033,1.01e-09,56;UBERON:0007196,1.50e-09,15;UBERON:0001558,1.50e-09,15;UBERON:0000153,1.61e-08,62;UBERON:0007811,1.61e-08,62;UBERON:0000365,2.49e-08,5;UBERON:0002185,3.11e-08,5;UBERON:0011159,3.44e-08,5;UBERON:0000166,4.59e-08,22;UBERON:0000165,9.67e-08,29;UBERON:0000930,9.67e-08,29;UBERON:0003729,1.63e-07,13;UBERON:0000161,1.64e-07,36;UBERON:0005157,2.99e-07,47;UBERON:0005910,5.28e-07,6;UBERON:0010188,6.88e-07,6;UBERON:0002539,6.88e-07,6;UBERON:0008816,6.88e-07,6 | |||
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| ||
|short_description=p1@CU687195 | |short_description=p1@CU687195 | ||
}} | }} |
Latest revision as of 09:34, 24 July 2015
Short description: | p1@CU687195 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CU687195_5end |
Coexpression cluster: | C207_Corneal_Keratinocyte_Esophageal_Mammary_Bronchial_Urothelial_Sebocyte |
Association with transcript: | -151bp_to_CU687195_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.96e-13 | 3 |
epithelium of bronchus | 1.96e-13 | 3 |
endoderm-derived structure | 3.16e-12 | 160 |
endoderm | 3.16e-12 | 160 |
presumptive endoderm | 3.16e-12 | 160 |
gingival epithelium | 3.19e-12 | 3 |
surface structure | 3.66e-12 | 99 |
mammary gland | 1.30e-10 | 4 |
mammary bud | 1.30e-10 | 4 |
mammary ridge | 1.30e-10 | 4 |
mammary placode | 1.30e-10 | 4 |
respiratory system | 2.20e-10 | 74 |
jaw skeleton | 3.91e-10 | 4 |
splanchnocranium | 3.91e-10 | 4 |
placenta | 4.03e-10 | 4 |
allantois | 4.03e-10 | 4 |
head | 1.01e-09 | 56 |
tracheobronchial tree | 1.50e-09 | 15 |
lower respiratory tract | 1.50e-09 | 15 |
anterior region of body | 1.61e-08 | 62 |
craniocervical region | 1.61e-08 | 62 |
urothelium | 2.49e-08 | 5 |
bronchus | 3.11e-08 | 5 |
primary subdivision of cranial skeletal system | 3.44e-08 | 5 |
oral opening | 4.59e-08 | 22 |
mouth | 9.67e-08 | 29 |
stomodeum | 9.67e-08 | 29 |
mouth mucosa | 1.63e-07 | 13 |
orifice | 1.64e-07 | 36 |
epithelial fold | 2.99e-07 | 47 |
transitional epithelium | 5.28e-07 | 6 |
protuberance | 6.88e-07 | 6 |
pharyngeal arch | 6.88e-07 | 6 |
embryonic head | 6.88e-07 | 6 |