FFCP PHASE1:Hg19::chr17:8066881..8066902,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:8066881..8066902,-
|short_description=p18@VAMP2
|description=CAGE_peak_18_at_VAMP2_5end
|association_with_transcript=-17bp_to_ENST00000404970_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6844 | |EntrezGene=6844 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12643 | |HGNC=12643 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-17bp_to_ENST00000404970_5end | |||
|cluster_id=chr17:8066881..8066902,- | |||
|description=CAGE_peak_18_at_VAMP2_5end | |||
|id=chr17:8066881..8066902,- | |||
|ontology_enrichment_celltype=CL:0002319!2.66e-10!25;CL:0000133!1.92e-08!59;CL:0000333!3.39e-08!41;CL:0002322!9.01e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;6.55e-34;5!CL:0000540;2.37e-18;6!CL:0000404;2.37e-18;6!CL:0002321;7.71e-16;15!CL:0002319;5.75e-15;25!CL:0000123;7.39e-15;2!CL:0000242;7.39e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.80e-34,5;CL:0000047,5.92e-21,8;CL:0000540,2.12e-18,6;CL:0000031,2.12e-18,6;CL:0000404,2.12e-18,6;CL:0002319,5.23e-15,25;CL:0000242,5.62e-15,2;CL:0000133,9.27e-14,59;CL:0000221,5.99e-11,72;CL:0000333,5.85e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000031;2.37e-18;6!CL:0000133;1.65e-08;59 | |||
|ontology_enrichment_disease=DOID:3095!3.01e-09!22;DOID:2994!3.01e-09!22;DOID:0050687!1.68e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1799;8.12e-08;1!DOID:10165;8.12e-08;1!DOID:1798;8.12e-08;1!DOID:3119;1.14e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.06e-07,1;DOID:10165,1.06e-07,1;DOID:1798,1.06e-07,1;DOID:3119,1.11e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000073!9.90e-09!94;UBERON:0001016!9.90e-09!94;UBERON:0001017!1.63e-07!82;UBERON:0005743!2.56e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p18@VAMP2 | |||
}} | }} |
Latest revision as of 13:51, 18 September 2015
Short description: | p18@VAMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_VAMP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -17bp_to_ENST00000404970_5end |
EntrezGene: | VAMP2 |
HGNC: | 12643 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.80e-34 | 5 |
neuronal stem cell | 5.92e-21 | 8 |
neuron | 2.12e-18 | 6 |
neuroblast | 2.12e-18 | 6 |
electrically signaling cell | 2.12e-18 | 6 |
neural cell | 5.23e-15 | 25 |
Merkel cell | 5.62e-15 | 2 |
neurectodermal cell | 9.27e-14 | 59 |
ectodermal cell | 5.99e-11 | 72 |
migratory neural crest cell | 5.85e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.06e-07 | 1 |
endocrine pancreas cancer | 1.06e-07 | 1 |
pancreatic endocrine carcinoma | 1.06e-07 | 1 |
gastrointestinal system cancer | 1.11e-07 | 14 |