FFCP PHASE1:Hg19::chr11:60970984..60970989,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=643834 | |EntrezGene=643834 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8885 | |HGNC=8885 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAB4 | |UniProt=F8WAB4 | ||
|association_with_transcript=0bp_to_ENST00000537954,ENST00000539649,NM_001079807,uc001nqx.2,uc010rld.1_5end | |association_with_transcript=0bp_to_ENST00000537954,ENST00000539649,NM_001079807,uc001nqx.2,uc010rld.1_5end | ||
|cluster_id=chr11:60970984..60970989,+ | |||
|coexpression_cluster_id=C238 | |coexpression_cluster_id=C238 | ||
|description=CAGE_peak_1_at_PGA3_5end | |description=CAGE_peak_1_at_PGA3_5end | ||
|id=chr11:60970984..60970989,+ | |id=chr11:60970984..60970989,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0001014;3.00e-07;2!CL:0001016;3.00e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,3.09e-07,2;CL:0001016,3.09e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.59e-15;7!UBERON:0009143;1.82e-13;1!UBERON:0008801;5.07e-13;1!UBERON:0006965;2.74e-07;2!UBERON:0008814;3.28e-07;2!UBERON:0010056;3.28e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.41e-18!115;UBERON:0004177!2.21e-13!7;UBERON:0002106!3.44e-09!3;UBERON:0004854!3.44e-09!3;UBERON:0009034!3.44e-09!3;UBERON:0002095!3.44e-09!3;UBERON:0004782!3.44e-09!3;UBERON:0003281!3.44e-09!3;UBERON:0009664!3.44e-09!3;UBERON:0002296!3.44e-09!3;UBERON:0005602!3.44e-09!3;UBERON:0001179!3.44e-09!3;UBERON:0006293!3.44e-09!3;UBERON:0008814!1.17e-07!15;UBERON:0002390!3.97e-07!102;UBERON:0003061!3.97e-07!102;UBERON:0000062!4.77e-07!511 | |ontology_enrichment_uberon=UBERON:0007023!7.41e-18!115;UBERON:0004177!2.21e-13!7;UBERON:0002106!3.44e-09!3;UBERON:0004854!3.44e-09!3;UBERON:0009034!3.44e-09!3;UBERON:0002095!3.44e-09!3;UBERON:0004782!3.44e-09!3;UBERON:0003281!3.44e-09!3;UBERON:0009664!3.44e-09!3;UBERON:0002296!3.44e-09!3;UBERON:0005602!3.44e-09!3;UBERON:0001179!3.44e-09!3;UBERON:0006293!3.44e-09!3;UBERON:0008814!1.17e-07!15;UBERON:0002390!3.97e-07!102;UBERON:0003061!3.97e-07!102;UBERON:0000062!4.77e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;3.25e-16;3!UBERON:0002336;2.05e-13;1!UBERON:0011215;2.05e-13;1!UBERON:0001018;2.05e-13;1!UBERON:0002473;2.05e-13;1!UBERON:0005340;2.05e-13;1!UBERON:0003544;2.05e-13;1!UBERON:0005970;2.05e-13;1!UBERON:0002316;2.05e-13;1!UBERON:0001020;2.05e-13;1!UBERON:0002437;2.05e-13;1!UBERON:0001831;5.07e-13;1!UBERON:0001567;5.07e-13;1!UBERON:0004177;4.12e-10;5!UBERON:0005057;4.12e-10;5!UBERON:0001041;2.84e-08;14!UBERON:0004921;8.04e-08;33!UBERON:0005162;2.43e-07;2!UBERON:0000122;2.43e-07;2!UBERON:0001829;3.81e-07;2!UBERON:0004089;3.81e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,4.11e-16,3;UBERON:0004854,4.11e-16,3;UBERON:0009034,4.11e-16,3;UBERON:0002095,4.11e-16,3;UBERON:0004782,4.11e-16,3;UBERON:0003281,4.11e-16,3;UBERON:0009664,4.11e-16,3;UBERON:0002296,4.11e-16,3;UBERON:0005602,4.11e-16,3;UBERON:0001179,4.11e-16,3;UBERON:0006293,4.11e-16,3;UBERON:0000945,1.11e-13,8;UBERON:0010039,1.11e-13,8;UBERON:0002336,2.06e-13,1;UBERON:0011215,2.06e-13,1;UBERON:0001018,2.06e-13,1;UBERON:0002473,2.06e-13,1;UBERON:0005340,2.06e-13,1;UBERON:0003544,2.06e-13,1;UBERON:0005970,2.06e-13,1;UBERON:0002316,2.06e-13,1;UBERON:0001020,2.06e-13,1;UBERON:0002437,2.06e-13,1;UBERON:0001831,5.38e-13,1;UBERON:0001567,5.38e-13,1;UBERON:0008801,5.38e-13,1;UBERON:0005409,4.40e-11,25;UBERON:0004177,1.98e-07,7;UBERON:0005057,1.98e-07,7;UBERON:0005162,2.43e-07,2;UBERON:0000122,2.43e-07,2;UBERON:0001829,3.93e-07,2;UBERON:0004089,3.93e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0.434377689410233,0,0,0.316462387440884,0.422510572623884,1.27562579979026,0.209658645508376,0.22465726229299,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46331618947972,0.44024217006613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.16480387422676,0,5.57894367102995,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22206028986725,0,0,0,18.2657070377635,0,0.234264445725339,0,0,0,0,2.41981432097328,0,0.189559738885464,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,32.1033644576668,0,0.225980740780532,0,0,4.17851253308799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.446342914883745,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04953004792701,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0,1.51243017733031,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,15.6302802246619,0,0,0,0,0,0,0,0,2.19303106742873,0.496211178389294,0,0,0,0.336283722218824,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0.214429632529969,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0.68732060563215,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.735444965261716,0,0,0,0,0,1.2217909337381,0.193373663920732,1.09935271517422,0,0,0,939.942931673268,0,0,0,0,0.436350690340377,2.1161073620616,0,0,0,0,0.218531143927391,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.434523000071005,0,0.0636471582781649,0.202117188958219,3.70118471424834,0.342233301085281,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0.434377689410233,0,0,0.316462387440884,0.422510572623884,1.27562579979026,0.209658645508376,0.22465726229299,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46331618947972,0.44024217006613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.16480387422676,0,5.57894367102995,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22206028986725,0,0,0,18.2657070377635,0,0.234264445725339,0,0,0,0,2.41981432097328,0,0.189559738885464,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,32.1033644576668,0,0.225980740780532,0,0,4.17851253308799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.446342914883745,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04953004792701,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0,1.51243017733031,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,15.6302802246619,0,0,0,0,0,0,0,0,2.19303106742873,0.496211178389294,0,0,0,0.336283722218824,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0.214429632529969,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0.68732060563215,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.735444965261716,0,0,0,0,0,1.2217909337381,0.193373663920732,1.09935271517422,0,0,0,939.942931673268,0,0,0,0,0.436350690340377,2.1161073620616,0,0,0,0,0.218531143927391,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.434523000071005,0,0.0636471582781649,0.202117188958219,3.70118471424834,0.342233301085281,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | ||
|short_description=p1@PGA3 | |short_description=p1@PGA3 | ||
}} | }} |
Latest revision as of 15:20, 18 September 2015
Short description: | p1@PGA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGA3_5end |
Coexpression cluster: | C238_stomach_gall_breast_duodenum_temporal_MCF7_smallcell |
Association with transcript: | 0bp_to_ENST00000537954, ENST00000539649, NM_001079807, uc001nqx.2, uc010rld.1_5end |
EntrezGene: | PGA3 |
HGNC: | 8885 |
UniProt: | F8WAB4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 3.09e-07 | 2 |
immature CD1a-positive Langerhans cell | 3.09e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
spleen | 4.11e-16 | 3 |
gastrointestinal system mesentery | 4.11e-16 | 3 |
stomach region | 4.11e-16 | 3 |
mesentery | 4.11e-16 | 3 |
gastrointestinal system serosa | 4.11e-16 | 3 |
mesentery of stomach | 4.11e-16 | 3 |
gut mesentery | 4.11e-16 | 3 |
dorsal mesentery | 4.11e-16 | 3 |
dorsal mesogastrium | 4.11e-16 | 3 |
peritoneal cavity | 4.11e-16 | 3 |
spleen primordium | 4.11e-16 | 3 |
stomach | 1.11e-13 | 8 |
food storage organ | 1.11e-13 | 8 |
corpus callosum | 2.06e-13 | 1 |
central nervous system cell part cluster | 2.06e-13 | 1 |
axon tract | 2.06e-13 | 1 |
intercerebral commissure | 2.06e-13 | 1 |
dorsal telencephalic commissure | 2.06e-13 | 1 |
brain white matter | 2.06e-13 | 1 |
brain commissure | 2.06e-13 | 1 |
white matter | 2.06e-13 | 1 |
nervous system commissure | 2.06e-13 | 1 |
cerebral hemisphere white matter | 2.06e-13 | 1 |
parotid gland | 5.38e-13 | 1 |
cheek | 5.38e-13 | 1 |
parotid gland primordium | 5.38e-13 | 1 |
gastrointestinal system | 4.40e-11 | 25 |
hemopoietic organ | 1.98e-07 | 7 |
immune organ | 1.98e-07 | 7 |
multi cell component structure | 2.43e-07 | 2 |
neuron projection bundle | 2.43e-07 | 2 |
major salivary gland | 3.93e-07 | 2 |
midface | 3.93e-07 | 2 |