FFCP PHASE1:Hg19::chr11:31838106..31838128,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5954,440034 | |EntrezGene=5954,440034 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9934 | |HGNC=9934 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000506388,NR_033971_5end | |association_with_transcript=0bp_to_ENST00000506388,NR_033971_5end | ||
|cluster_id=chr11:31838106..31838128,+ | |||
|coexpression_cluster_id=C76 | |coexpression_cluster_id=C76 | ||
|description=CAGE_peak_9_at_RCN1_5end | |description=CAGE_peak_9_at_RCN1_5end | ||
|id=chr11:31838106..31838128,+ | |id=chr11:31838106..31838128,+ | ||
|ontology_enrichment_celltype=CL:0002605!2.37e-10!3;CL:0000064!3.45e-10!3;CL:0005012!3.45e-10!3;CL:0000067!3.45e-10!3;CL:0002304!3.45e-10!3;CL:0000128!2.71e-07!7;CL:0000126!2.71e-07!7;CL:0000127!2.71e-07!7;CL:0002453!2.71e-07!7 | |ontology_enrichment_celltype=CL:0002605!2.37e-10!3;CL:0000064!3.45e-10!3;CL:0005012!3.45e-10!3;CL:0000067!3.45e-10!3;CL:0002304!3.45e-10!3;CL:0000128!2.71e-07!7;CL:0000126!2.71e-07!7;CL:0000127!2.71e-07!7;CL:0002453!2.71e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0002535;1.82e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.82e-11,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.06e-27;3!UBERON:0003056;5.18e-08;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:154;3.52e-11;2!DOID:4236;3.52e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:154,3.70e-11,2;DOID:4236,3.70e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.61e-55!57;UBERON:0005068!3.61e-55!57;UBERON:0006241!3.61e-55!57;UBERON:0007135!3.61e-55!57;UBERON:0003075!1.04e-51!86;UBERON:0007284!1.04e-51!86;UBERON:0002346!5.87e-49!90;UBERON:0002616!2.07e-46!59;UBERON:0005743!1.95e-45!86;UBERON:0001017!3.27e-45!82;UBERON:0001893!1.77e-43!34;UBERON:0003056!4.65e-42!61;UBERON:0002780!8.25e-42!41;UBERON:0001890!8.25e-42!41;UBERON:0006240!8.25e-42!41;UBERON:0002791!2.88e-41!33;UBERON:0003080!1.13e-40!42;UBERON:0000955!1.58e-40!69;UBERON:0006238!1.58e-40!69;UBERON:0000073!3.02e-40!94;UBERON:0001016!3.02e-40!94;UBERON:0002020!6.71e-40!34;UBERON:0003528!6.71e-40!34;UBERON:0001869!8.27e-39!32;UBERON:0000033!8.58e-31!123;UBERON:0000956!1.02e-29!25;UBERON:0000203!1.02e-29!25;UBERON:0000153!6.72e-29!129;UBERON:0007811!6.72e-29!129;UBERON:0004121!6.06e-25!169;UBERON:0000924!4.03e-24!173;UBERON:0006601!4.03e-24!173;UBERON:0001871!1.15e-23!7;UBERON:0007023!5.36e-23!115;UBERON:0002619!1.90e-22!22;UBERON:0001950!3.31e-21!20;UBERON:0002420!7.80e-16!9;UBERON:0007245!7.80e-16!9;UBERON:0010009!7.80e-16!9;UBERON:0010011!7.80e-16!9;UBERON:0000454!7.80e-16!9;UBERON:0003076!4.45e-15!15;UBERON:0003057!4.45e-15!15;UBERON:0000025!6.89e-12!194;UBERON:0004733!1.24e-11!12;UBERON:0002028!1.24e-11!12;UBERON:0007277!1.24e-11!12;UBERON:0002308!1.74e-11!9;UBERON:0000125!1.74e-11!9;UBERON:0000064!2.00e-11!219;UBERON:0009663!1.10e-10!7;UBERON:0004732!1.17e-10!13;UBERON:0001778!3.45e-10!3;UBERON:0001775!3.45e-10!3;UBERON:0000349!3.75e-10!5;UBERON:0002771!9.81e-10!3;UBERON:0000483!9.98e-10!309;UBERON:0000119!1.56e-09!312;UBERON:0002298!4.86e-09!8;UBERON:0000477!5.52e-09!286;UBERON:0004111!1.49e-08!241;UBERON:0002680!2.83e-08!9;UBERON:0001895!2.83e-08!9;UBERON:0010092!2.83e-08!9;UBERON:0000200!4.61e-08!6;UBERON:0000488!9.85e-08!4;UBERON:0000475!1.12e-07!365;UBERON:0000369!1.36e-07!4;UBERON:0002435!1.36e-07!4;UBERON:0000204!1.36e-07!4;UBERON:0010082!1.36e-07!4;UBERON:0000481!1.96e-07!347;UBERON:0001876!2.83e-07!2;UBERON:0000970!5.90e-07!20;UBERON:0007625!6.36e-07!11 | |ontology_enrichment_uberon=UBERON:0001049!3.61e-55!57;UBERON:0005068!3.61e-55!57;UBERON:0006241!3.61e-55!57;UBERON:0007135!3.61e-55!57;UBERON:0003075!1.04e-51!86;UBERON:0007284!1.04e-51!86;UBERON:0002346!5.87e-49!90;UBERON:0002616!2.07e-46!59;UBERON:0005743!1.95e-45!86;UBERON:0001017!3.27e-45!82;UBERON:0001893!1.77e-43!34;UBERON:0003056!4.65e-42!61;UBERON:0002780!8.25e-42!41;UBERON:0001890!8.25e-42!41;UBERON:0006240!8.25e-42!41;UBERON:0002791!2.88e-41!33;UBERON:0003080!1.13e-40!42;UBERON:0000955!1.58e-40!69;UBERON:0006238!1.58e-40!69;UBERON:0000073!3.02e-40!94;UBERON:0001016!3.02e-40!94;UBERON:0002020!6.71e-40!34;UBERON:0003528!6.71e-40!34;UBERON:0001869!8.27e-39!32;UBERON:0000033!8.58e-31!123;UBERON:0000956!1.02e-29!25;UBERON:0000203!1.02e-29!25;UBERON:0000153!6.72e-29!129;UBERON:0007811!6.72e-29!129;UBERON:0004121!6.06e-25!169;UBERON:0000924!4.03e-24!173;UBERON:0006601!4.03e-24!173;UBERON:0001871!1.15e-23!7;UBERON:0007023!5.36e-23!115;UBERON:0002619!1.90e-22!22;UBERON:0001950!3.31e-21!20;UBERON:0002420!7.80e-16!9;UBERON:0007245!7.80e-16!9;UBERON:0010009!7.80e-16!9;UBERON:0010011!7.80e-16!9;UBERON:0000454!7.80e-16!9;UBERON:0003076!4.45e-15!15;UBERON:0003057!4.45e-15!15;UBERON:0000025!6.89e-12!194;UBERON:0004733!1.24e-11!12;UBERON:0002028!1.24e-11!12;UBERON:0007277!1.24e-11!12;UBERON:0002308!1.74e-11!9;UBERON:0000125!1.74e-11!9;UBERON:0000064!2.00e-11!219;UBERON:0009663!1.10e-10!7;UBERON:0004732!1.17e-10!13;UBERON:0001778!3.45e-10!3;UBERON:0001775!3.45e-10!3;UBERON:0000349!3.75e-10!5;UBERON:0002771!9.81e-10!3;UBERON:0000483!9.98e-10!309;UBERON:0000119!1.56e-09!312;UBERON:0002298!4.86e-09!8;UBERON:0000477!5.52e-09!286;UBERON:0004111!1.49e-08!241;UBERON:0002680!2.83e-08!9;UBERON:0001895!2.83e-08!9;UBERON:0010092!2.83e-08!9;UBERON:0000200!4.61e-08!6;UBERON:0000488!9.85e-08!4;UBERON:0000475!1.12e-07!365;UBERON:0000369!1.36e-07!4;UBERON:0002435!1.36e-07!4;UBERON:0000204!1.36e-07!4;UBERON:0010082!1.36e-07!4;UBERON:0000481!1.96e-07!347;UBERON:0001876!2.83e-07!2;UBERON:0000970!5.90e-07!20;UBERON:0007625!6.36e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.24e-14;6!UBERON:0006955;1.82e-11;2!UBERON:0004801;1.82e-11;2!UBERON:0002680;1.01e-09;9!UBERON:0001895;1.01e-09;9!UBERON:0000970;1.26e-09;20!UBERON:0002104;3.40e-09;21!UBERON:0000020;1.90e-08;23!UBERON:0001032;4.05e-08;24!UBERON:0004456;4.05e-08;24!UBERON:0004733;1.62e-07;12!UBERON:0002028;1.62e-07;12!UBERON:0004732;5.26e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.25e-14,6;UBERON:0006215,3.25e-14,6;UBERON:0006955,1.82e-11,2;UBERON:0004801,1.82e-11,2;UBERON:0002680,8.46e-10,9;UBERON:0001895,8.46e-10,9;UBERON:0010092,8.46e-10,9;UBERON:0000970,3.45e-09,21;UBERON:0002104,3.45e-09,21;UBERON:0000020,4.10e-08,24;UBERON:0001032,4.10e-08,24;UBERON:0004456,4.10e-08,24;UBERON:0004733,1.42e-07,12;UBERON:0002028,1.42e-07,12;UBERON:0007277,1.42e-07,12;UBERON:0004732,4.66e-07,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.572471974262113,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0.614843499851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73895607462615,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,15.1159648712566,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0.689486746482929,0,1.38899995946634,0.885741385813839,0,0,1.99042667876204,1.77328571372128,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0.593042257361244,0.988511511572023,1.35748534357092,0.134802265961354,0,0.234264445725339,0,0,0,0,1.20990716048664,0.30607276163049,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03382666702479,0,0,0.126621591911757,0,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.544813624446302,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0.554645257684261,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0.252071696221718,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0.314231179832004,0,0,0,0,2.00134323694638,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.49732190632894,0,0,0,0.231522474323834,0.218559560503957,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.572471974262113,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0.614843499851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73895607462615,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,15.1159648712566,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0.689486746482929,0,1.38899995946634,0.885741385813839,0,0,1.99042667876204,1.77328571372128,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0.593042257361244,0.988511511572023,1.35748534357092,0.134802265961354,0,0.234264445725339,0,0,0,0,1.20990716048664,0.30607276163049,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03382666702479,0,0,0.126621591911757,0,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.544813624446302,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0.554645257684261,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0.252071696221718,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0.314231179832004,0,0,0,0,2.00134323694638,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.49732190632894,0,0,0,0.231522474323834,0.218559560503957,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p9@RCN1 | |short_description=p9@RCN1 | ||
}} | }} |
Latest revision as of 15:05, 17 September 2015
Short description: | p9@RCN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_RCN1_5end |
Coexpression cluster: | C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell |
Association with transcript: | 0bp_to_ENST00000506388, NR_033971_5end |
EntrezGene: | 5954,440034 |
HGNC: | 9934 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.82e-11 | 2 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.25e-14 | 6 |
rhombic lip | 3.25e-14 | 6 |
uterine epithelium | 1.82e-11 | 2 |
cervix epithelium | 1.82e-11 | 2 |
regional part of metencephalon | 8.46e-10 | 9 |
metencephalon | 8.46e-10 | 9 |
future metencephalon | 8.46e-10 | 9 |
eye | 3.45e-09 | 21 |
visual system | 3.45e-09 | 21 |
sense organ | 4.10e-08 | 24 |
sensory system | 4.10e-08 | 24 |
entire sense organ system | 4.10e-08 | 24 |
segmental subdivision of hindbrain | 1.42e-07 | 12 |
hindbrain | 1.42e-07 | 12 |
presumptive hindbrain | 1.42e-07 | 12 |
segmental subdivision of nervous system | 4.66e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 3.70e-11 | 2 |
carcinosarcoma | 3.70e-11 | 2 |