FFCP PHASE1:Hg19::chr11:20792354..20792385,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4745 | |EntrezGene=4745 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7750 | |HGNC=7750 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000527873,ENST00000529595_5end | |association_with_transcript=0bp_to_ENST00000527873,ENST00000529595_5end | ||
|cluster_id=chr11:20792354..20792385,+ | |||
|coexpression_cluster_id=C177 | |coexpression_cluster_id=C177 | ||
|description=CAGE_peak_3_at_NELL1_5end | |description=CAGE_peak_3_at_NELL1_5end | ||
|id=chr11:20792354..20792385,+ | |id=chr11:20792354..20792385,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000123;3.82e-08;2!CL:0000242;3.82e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,3.82e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.20e-10;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;3.56e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.56e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.15e-86!57;UBERON:0005068!3.15e-86!57;UBERON:0006241!3.15e-86!57;UBERON:0007135!3.15e-86!57;UBERON:0002780!1.67e-82!41;UBERON:0001890!1.67e-82!41;UBERON:0006240!1.67e-82!41;UBERON:0003080!2.16e-80!42;UBERON:0002616!1.07e-78!59;UBERON:0001893!3.18e-76!34;UBERON:0001017!1.09e-73!82;UBERON:0000955!4.47e-73!69;UBERON:0006238!4.47e-73!69;UBERON:0002791!7.98e-73!33;UBERON:0002020!2.64e-70!34;UBERON:0003528!2.64e-70!34;UBERON:0001869!7.03e-70!32;UBERON:0005743!7.12e-70!86;UBERON:0003075!1.61e-63!86;UBERON:0007284!1.61e-63!86;UBERON:0000073!1.94e-62!94;UBERON:0001016!1.94e-62!94;UBERON:0002346!2.74e-60!90;UBERON:0002619!7.18e-60!22;UBERON:0001950!3.09e-59!20;UBERON:0003056!1.22e-56!61;UBERON:0000956!2.41e-52!25;UBERON:0000203!2.41e-52!25;UBERON:0000033!9.60e-42!123;UBERON:0000153!1.39e-41!129;UBERON:0007811!1.39e-41!129;UBERON:0007023!2.18e-41!115;UBERON:0004121!2.66e-36!169;UBERON:0000924!3.11e-35!173;UBERON:0006601!3.11e-35!173;UBERON:0002420!1.34e-25!9;UBERON:0007245!1.34e-25!9;UBERON:0010009!1.34e-25!9;UBERON:0010011!1.34e-25!9;UBERON:0000454!1.34e-25!9;UBERON:0001871!1.45e-22!7;UBERON:0000025!3.34e-20!194;UBERON:0002308!6.33e-19!9;UBERON:0000125!6.33e-19!9;UBERON:0009663!1.59e-18!7;UBERON:0001872!2.10e-18!5;UBERON:0002021!7.91e-18!5;UBERON:0000200!1.42e-15!6;UBERON:0004111!1.78e-15!241;UBERON:0000369!2.35e-15!4;UBERON:0002435!2.35e-15!4;UBERON:0000204!2.35e-15!4;UBERON:0010082!2.35e-15!4;UBERON:0000483!2.64e-14!309;UBERON:0000119!4.55e-14!312;UBERON:0000064!1.53e-13!219;UBERON:0000477!2.28e-13!286;UBERON:0000349!7.46e-13!5;UBERON:0002771!4.76e-12!3;UBERON:0005383!7.13e-12!3;UBERON:0005382!7.13e-12!3;UBERON:0000475!1.99e-11!365;UBERON:0002298!2.84e-10!8;UBERON:0003076!5.34e-10!15;UBERON:0003057!5.34e-10!15;UBERON:0004733!1.87e-09!12;UBERON:0002028!1.87e-09!12;UBERON:0007277!1.87e-09!12;UBERON:0001876!5.42e-09!2;UBERON:0004732!1.11e-08!13;UBERON:0001894!1.63e-08!7;UBERON:0006222!1.63e-08!7;UBERON:0001873!1.94e-08!2;UBERON:0010122!1.94e-08!2;UBERON:0001897!2.42e-08!2;UBERON:0002360!1.48e-07!2;UBERON:0000094!1.48e-07!2;UBERON:0007645!1.48e-07!2;UBERON:0000062!2.28e-07!511 | |ontology_enrichment_uberon=UBERON:0001049!3.15e-86!57;UBERON:0005068!3.15e-86!57;UBERON:0006241!3.15e-86!57;UBERON:0007135!3.15e-86!57;UBERON:0002780!1.67e-82!41;UBERON:0001890!1.67e-82!41;UBERON:0006240!1.67e-82!41;UBERON:0003080!2.16e-80!42;UBERON:0002616!1.07e-78!59;UBERON:0001893!3.18e-76!34;UBERON:0001017!1.09e-73!82;UBERON:0000955!4.47e-73!69;UBERON:0006238!4.47e-73!69;UBERON:0002791!7.98e-73!33;UBERON:0002020!2.64e-70!34;UBERON:0003528!2.64e-70!34;UBERON:0001869!7.03e-70!32;UBERON:0005743!7.12e-70!86;UBERON:0003075!1.61e-63!86;UBERON:0007284!1.61e-63!86;UBERON:0000073!1.94e-62!94;UBERON:0001016!1.94e-62!94;UBERON:0002346!2.74e-60!90;UBERON:0002619!7.18e-60!22;UBERON:0001950!3.09e-59!20;UBERON:0003056!1.22e-56!61;UBERON:0000956!2.41e-52!25;UBERON:0000203!2.41e-52!25;UBERON:0000033!9.60e-42!123;UBERON:0000153!1.39e-41!129;UBERON:0007811!1.39e-41!129;UBERON:0007023!2.18e-41!115;UBERON:0004121!2.66e-36!169;UBERON:0000924!3.11e-35!173;UBERON:0006601!3.11e-35!173;UBERON:0002420!1.34e-25!9;UBERON:0007245!1.34e-25!9;UBERON:0010009!1.34e-25!9;UBERON:0010011!1.34e-25!9;UBERON:0000454!1.34e-25!9;UBERON:0001871!1.45e-22!7;UBERON:0000025!3.34e-20!194;UBERON:0002308!6.33e-19!9;UBERON:0000125!6.33e-19!9;UBERON:0009663!1.59e-18!7;UBERON:0001872!2.10e-18!5;UBERON:0002021!7.91e-18!5;UBERON:0000200!1.42e-15!6;UBERON:0004111!1.78e-15!241;UBERON:0000369!2.35e-15!4;UBERON:0002435!2.35e-15!4;UBERON:0000204!2.35e-15!4;UBERON:0010082!2.35e-15!4;UBERON:0000483!2.64e-14!309;UBERON:0000119!4.55e-14!312;UBERON:0000064!1.53e-13!219;UBERON:0000477!2.28e-13!286;UBERON:0000349!7.46e-13!5;UBERON:0002771!4.76e-12!3;UBERON:0005383!7.13e-12!3;UBERON:0005382!7.13e-12!3;UBERON:0000475!1.99e-11!365;UBERON:0002298!2.84e-10!8;UBERON:0003076!5.34e-10!15;UBERON:0003057!5.34e-10!15;UBERON:0004733!1.87e-09!12;UBERON:0002028!1.87e-09!12;UBERON:0007277!1.87e-09!12;UBERON:0001876!5.42e-09!2;UBERON:0004732!1.11e-08!13;UBERON:0001894!1.63e-08!7;UBERON:0006222!1.63e-08!7;UBERON:0001873!1.94e-08!2;UBERON:0010122!1.94e-08!2;UBERON:0001897!2.42e-08!2;UBERON:0002360!1.48e-07!2;UBERON:0000094!1.48e-07!2;UBERON:0007645!1.48e-07!2;UBERON:0000062!2.28e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0001871;4.31e-47;6!UBERON:0002619;1.60e-45;22!UBERON:0000349;1.19e-42;5!UBERON:0000956;3.45e-40;25!UBERON:0000203;3.45e-40;25!UBERON:0001950;1.49e-39;20!UBERON:0001869;5.53e-35;32!UBERON:0003528;5.76e-34;34!UBERON:0002020;5.76e-34;34!UBERON:0002791;1.60e-33;32!UBERON:0001893;1.92e-33;34!UBERON:0001876;6.19e-28;2!UBERON:0002771;4.08e-27;2!UBERON:0002780;1.34e-26;41!UBERON:0001890;1.34e-26;41!UBERON:0000073;5.23e-19;53!UBERON:0002616;5.23e-19;53!UBERON:0000955;1.73e-17;68!UBERON:0001882;1.84e-14;1!UBERON:0002022;1.84e-14;1!UBERON:0005403;1.84e-14;1!UBERON:0002420;5.40e-14;9!UBERON:0007245;5.40e-14;9!UBERON:0010009;5.40e-14;9!UBERON:0010011;5.40e-14;9!UBERON:0000454;5.40e-14;9!UBERON:0001017;1.26e-11;75!UBERON:0000200;1.06e-09;6!UBERON:0001016;1.44e-08;83!UBERON:0001905;7.03e-08;2!UBERON:0001954;7.03e-08;2!UBERON:0002757;7.03e-08;2!UBERON:0010134;7.03e-08;2!UBERON:0003022;7.03e-08;2!UBERON:0005408;7.03e-08;2!UBERON:0002421;7.03e-08;2!UBERON:0001899;7.03e-08;2!UBERON:0002600;7.03e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001871,4.32e-47,6;UBERON:0002619,1.23e-45,22;UBERON:0000349,1.32e-42,5;UBERON:0000956,2.74e-40,25;UBERON:0000203,2.74e-40,25;UBERON:0001950,1.35e-39,20;UBERON:0002791,6.85e-39,32;UBERON:0001869,6.85e-39,32;UBERON:0002780,1.09e-36,41;UBERON:0001890,1.09e-36,41;UBERON:0003080,1.09e-36,41;UBERON:0006240,1.09e-36,41;UBERON:0003528,1.29e-36,34;UBERON:0002020,1.29e-36,34;UBERON:0001893,1.29e-36,34;UBERON:0000955,2.32e-30,68;UBERON:0006238,2.32e-30,68;UBERON:0000073,2.69e-28,53;UBERON:0002616,2.69e-28,53;UBERON:0001876,7.10e-28,2;UBERON:0002771,3.13e-27,2;UBERON:0001049,9.51e-27,56;UBERON:0005068,9.51e-27,56;UBERON:0006241,9.51e-27,56;UBERON:0007135,9.51e-27,56;UBERON:0001017,2.12e-25,81;UBERON:0003056,1.68e-24,61;UBERON:0001016,8.78e-23,89;UBERON:0010371,6.49e-20,104;UBERON:0007023,4.06e-18,114;UBERON:0003075,5.28e-18,82;UBERON:0007284,5.28e-18,82;UBERON:0002346,4.04e-17,86;UBERON:0004121,1.26e-15,171;UBERON:0000924,1.26e-15,171;UBERON:0006601,1.26e-15,171;UBERON:0002022,1.61e-14,1;UBERON:0001882,2.75e-14,1;UBERON:0005403,2.75e-14,1;UBERON:0002420,6.45e-14,9;UBERON:0007245,6.45e-14,9;UBERON:0010009,6.45e-14,9;UBERON:0010011,6.45e-14,9;UBERON:0000454,6.45e-14,9;UBERON:0010314,9.27e-11,132;UBERON:0000200,9.68e-10,6;UBERON:0011216,2.45e-08,223;UBERON:0001954,5.74e-08,2;UBERON:0003022,5.74e-08,2;UBERON:0002421,5.74e-08,2;UBERON:0002600,5.74e-08,2;UBERON:0001905,9.19e-08,2;UBERON:0002757,9.19e-08,2;UBERON:0010134,9.19e-08,2;UBERON:0005408,9.19e-08,2;UBERON:0001899,9.19e-08,2;UBERON:0000025,5.45e-07,192 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97659059106519,2.11004124615769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,1.11321717794222,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.844175070377856,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0,0.394584402849391,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886351143382302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90684768556206,0,0,0,0,0,1.64023802976667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58634144372552,0.500763722825999,0,0.110929051536852,0.124192805882767,0,0,13.4967714612067,0,0,0,5.65192011582218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7973596699725,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09189682663981,2.8339315265117,0.798169295285756,0.205116364240755,0.252071696221718,0.276629009856872,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945526184657525,2.34323429584154,0.826747186004736,0.443910671357348,0.546974809018219,0,0,0,0,0,1.00885116665647,0,0,0,0,0,0.271878931907327,0.72350050919134,0,0,0,0.942693539496011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935757853848423,0.198950775161368,0,0.11294608203896,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,1.22384682343646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0.724030971033267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97659059106519,2.11004124615769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,1.11321717794222,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.844175070377856,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0,0.394584402849391,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886351143382302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90684768556206,0,0,0,0,0,1.64023802976667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58634144372552,0.500763722825999,0,0.110929051536852,0.124192805882767,0,0,13.4967714612067,0,0,0,5.65192011582218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7973596699725,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09189682663981,2.8339315265117,0.798169295285756,0.205116364240755,0.252071696221718,0.276629009856872,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945526184657525,2.34323429584154,0.826747186004736,0.443910671357348,0.546974809018219,0,0,0,0,0,1.00885116665647,0,0,0,0,0,0.271878931907327,0.72350050919134,0,0,0,0.942693539496011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935757853848423,0.198950775161368,0,0.11294608203896,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,1.22384682343646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0.724030971033267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@NELL1 | |short_description=p3@NELL1 | ||
}} | }} |
Latest revision as of 07:22, 17 September 2015
Short description: | p3@NELL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NELL1_5end |
Coexpression cluster: | C177_melanoma_Melanocyte_mesenchymal_retina_Mallassezderived_Gingival_squamous |
Association with transcript: | 0bp_to_ENST00000527873, ENST00000529595_5end |
EntrezGene: | NELL1 |
HGNC: | 7750 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 3.82e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.56e-08 | 2 |