Coexpression cluster:C1501: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{Coexpression_clusters | {{Coexpression_clusters|coexpression_dpi_cluster_scores_median=-0.140732227458691,0.084042576082458,0.00425559734154455,-0.0670976412812873,0.0448811508999218,0.0635034815694419,-0.0181426317626435,0.146858175164143,0.0538848664781853,-0.0038282482519955,-0.345825609019403,-0.322345771768837,-0.4840172163071,-0.155932953814203,-0.170449696724181,-0.087767298915706,0.105923575746592,0.0605997985358458,0.041725078811296,-0.0932976385693488,-0.326765741903798,-0.394627340658396,0.0672561425391203,0.252248756690196,0.139788842662608,0.382145883606537,0.449432857382479,0.445483335587243,-0.706541739375365,-0.386655931582368,-0.685496530040818,0.182253391860249,-0.129096331624038,-0.179650545659132,0.39372608721051,0.492006549414488,0.177013637221695,-0.739642698747585,-0.635641299230383,-0.619813703306233,-0.251579506639856,-0.251234212732934,-0.263500161711542,-0.762999948625725,-0.487223007032819,-0.462595731609454,-0.630343763221918,-0.332128054319837,-0.345305848978406,-0.465761945509285,-0.362119200966296,-0.258027324621938,-0.602469937828612,-0.291103173995279,-0.213180874400149,-0.693354498947722,-0.432755939911551,-0.346445646134317,-0.737654367028981,-0.390973564504218,-0.374139888968089,-0.667409407658105,-0.428536299034626,-0.414406998689955,-0.794666649176563,-0.56658530496483,-0.38271244538161,-0.533313161924907,-0.355970948210095,-0.358091717143687,-0.5357082324183,-0.461584853726612,-0.3925967508187,-0.210218975610525,-0.274653631871084,-0.158634445738664,-0.446275614851704,-0.399606925821383,-0.441452961176664,-0.373343133305488,-0.430954553884682,-0.321682607049733,-0.115835821878134,-0.154815490592115,-0.123845731208671,-0.192903164386989,-0.167922058961945,-0.140220492409976,-0.195605786534823,-0.168975112709711,-0.481182794893169,-0.302459783209997,-0.295355291203523,-0.270095317457066,-0.241385329900943,0.203705093197338,-0.542008049364459,-0.404179119008619,-0.442801816769676,-0.161219574798653,-0.208874472595915,-0.206728068154503,-0.280225572835675,-0.252379521525934,-0.394351359112689,-0.332132933671823,-0.310904279709891,-0.17682619761837,-0.136523223309628,-0.13340364925156,-0.197350887495684,-0.174247286714068,-0.270039851943385,-0.270914715750792,-0.286487435953019,-0.213454834003378,-0.301313530214725,-0.269862627535046,-0.212737592678665,-0.118056701665168,-0.162185076513489,-0.206041802341313,-0.130515864344687,-0.140113099984924,-0.199027629252298,-0.233554864808841,-0.291232946528134,-0.380887872777658,-0.41991392847316,-0.436770974749731,-0.0232229202860275,0.0628548518370804,0.0476131926906698,0.101447463344882,-0.236792359849119,-0.124587073564867,-0.194043063987497,-0.249724129651536,0.114286699725801,0.0991195918220563,0.0716055587333455,-0.257537372530195,-0.329926501626372,-0.183694832506213,-0.0382629101346089,-0.0540802752363512,-0.015388832973907,-0.399994305051607,-0.350876454046866,-0.316506071670791,-0.0593583482461006,-0.129878375141835,-0.107326635176219,-0.168228029299801,-0.0979158195328577,0.0358054142997104,-0.0132452970295479,0.0142496624635412,-0.0345228254583771,-0.185651364221867,-0.147975094944697,-0.0642786711249831,-0.483229452463238,0.279308612259382,-0.220931179982951,0.204140088138412,0.150096406423677,0.202616064374994,-0.0847017226617093,-0.19433311783375,-0.0602398241524598,-0.954415426962845,-0.828280400952032,-0.242152876802531,-0.101732149922993,0.0830062805666705,0.0611846253553108,-0.139248625188384,0.0865998921741143,0.0433764665213339,-0.302879997782784,-0.14417869466289,-0.0451635294717901,0.0593961101169332,0.256236137390443,-0.242488815947182,-0.163585561071368,-0.413339563250847,0.308201822320318,0.0397156072379097,0.211673378548064,0.38227797407764,0.383905815202521,0.452585955394277,0.113482628863708,0.259330404505965,-0.123024531858739,-0.226454632944655,-0.195173254856485,-0.27353665981299,-0.6401848684855,0.320207940633373,0.271623506252618,0.0737888512104866,-0.134020701908664,-0.125992014694587,-0.217607947244303,0.33761253751011,-0.153715564187288,-0.226675362620208,-0.0395828945821922,-0.232622771260395,0.00644293301335963,-0.193632845609909,-0.2171252644835,-0.0509470651990593,-0.0332064073597895,-0.173537474584827,-0.181698356299109,-0.0961287722971493,-0.343279049326312,0.0163837953396939,0.0480424013147993,-0.0182612158544892,0.0544834261474043,0.0434103464764013,0.536942442197794,0.430432908069558,0.441604895852223,0.339402180254243,0.492765766826998,0.511015895544285,-0.468744635864284,-0.411357294473093,-0.256355236217933,-0.117929177325152,-0.0318596223338654,0.501530091140945,0.48376359485295,0.549295215280861,0.493471689873983,0.495977786600859,0.526743767283918,0.494530892361261,0.522164208687768,0.521075936896986,-0.205936008655043,-0.355815099625313,-0.330200540160465,-0.650430990331364,0.403851350192303,0.226615960052337,0.427742102549607,0.205851151627674,0.328064308670499,0.299709369268917,-0.0319728121852072,-0.277852140380988,0.126419403858121,0.162210307849061,-0.319276857224684,-0.228037388972898,0.297166863095625,0.00472502131495977,0.0198426958682489,0.0318908401331065,0.0947520610885909,0.183618925986775,-0.18116407488471,-0.165779399250319,-0.0433493094728741,0.0981275405599599,-0.134888823042601,0.0678273033018504,-0.10465266122022,0.223344853527402,0.0938978235120059,0.219497072139126,-0.100361306267504,0.0822990542367873,-0.160483400634603,0.181329515759213,-0.160252459669507,0.206969386145304,0.273991801931361,-0.127487170957441,-0.385433558324014,-0.401304482830934,0.349626005183183,0.259676773879705,0.124160611759966,-0.00459562975721528,-0.0172297932099747,0.353713117934152,0.0591616281943511,-0.808195509231914,0.317764131303625,-0.141831888346722,-0.0659366263530864,-0.0763075071481497,-0.0347324184785795,-0.212334981100699,-0.0451596993210679,-0.532357116434978,-0.126929361883857,0.395452160673007,-0.0917810431878296,0.364727474884329,0.102517160623279,-0.0348915599769987,0.0385500791582826,-0.12380544573863,0.0039092545130227,-0.036395426624751,-0.0714910926440502,-0.176168113706035,0.202671475222376,0.157414885513682,0.108208127039558,0.0344875772011898,0.265824583334788,-0.404638940184397,-0.404550394207763,-0.471739147665755,0.123949762680714,-0.229674924908389,-0.00719387842674845,0.0030440442739458,0.159885813872792,-1.07368275113731,-1.08768616728133,-1.24633351296114,-0.105381023835795,-0.219318507575241,-0.0164939966401702,-0.186405779862062,-0.0105378500126748,-0.167473733470233,-0.12761230821558,-0.239787927365158,-0.369806411454974,-0.39329173681363,0.143116945516683,-0.176554554777693,0.101983248971086,-0.40182968639886,-0.384566194694012,-0.374011079025346,-0.53625322375512,-0.402587834526054,-0.156378339866637,-0.302510195628092,-0.389873317523728,-0.127823729818621,-0.214820475146077,-0.262724389342848,-0.0673481156098518,-0.102797576607646,-0.154183958902412,-0.0865854073221071,0.298323697194693,0.110088015784383,0.30898758175597,0.245902544698874,0.248664673751398,0.433085210583841,-0.118734023805768,-0.170161300835775,0.138992589946177,0.170979614994064,-0.208031273683766,-0.418505109222815,0.155528908957255,-0.356760931699622,-0.296686420350899,0.159040779968941,-0.620623462494657,-0.0319408865488805,0.294255464357325,-0.462994103083481,-0.246576907322627,-0.404946771052513,-0.0561868435483548,-0.233018888683154,-0.228713061145457,0.127406511694057,0.13458851083992,0.411981842773286,-0.123236938635472,0.128416058460008,0.466656938698666,0.400701890226275,0.43609541149696,-0.0563570417596622,0.0676331579231902,-0.0265533172132831,-0.0405214754442741,0.414576032074414,0.367532797442554,0.421662578864059,0.128090484906281,0.0750582671870208,0.333886376579322,-0.0710164328549518,-0.10929948940041,-0.112251570805886,-0.0560738564218081,-0.198997164365929,0.0186250564785382,-0.0648356165866965,-0.116376873067863,-0.254856916559257,-0.225837006435278,-0.110968768936077,-0.0880034803452351,0.0429208141731462,0.103019875930963,0.0459926674135946,-0.0122104399656001,-0.125975883883497,-0.12003251345281,-0.267271332379614,-0.191873701445212,0.0967143373968426,0.132189842140621,0.184032001806178,-0.19507273791834,-0.0953377658586146,0.0263179265573927,-0.273960709848938,0.00191642974342055,-0.305367703286548,0.0579433733616019,0.0082131372966002,-0.32291511883589,-0.293367417351905,-0.00562860407522585,-0.0597727200506279,-0.198461836688621,-0.0846423319038153,-0.156306807764793,-0.0346258826362551,-0.0534806470657288,0.30722668326688,0.00587358305470155,-0.116087755791532,0.250179390361478,-0.125789053129966,-0.105258201504035,-0.0252788961200703,-0.286852575960137,0.0142263731287039,-0.164628746676416,-0.227477129605172,0.468711068076568,-0.525434008324879,-0.263635529244844,-0.544234005997044,-0.109147210720932,-0.51432888778676,-0.566714329091007,-0.53526228180437,-0.386952181760729,-0.444157685423162,-0.613385671968891,-0.42936103101782,-0.57481155015353,0.477180877532824,0.148204082184604,0.431589438194581,0.787169493665827,0.486293106371071,0.10450375330326,0.582581638601887,0.620811350086911,0.116182210713206,0.194046622409983,0.645523386747342,0.217104201453588,0.300306954399213,0.672352043799532,0.0684100127799477,0.469204524962567,0.482490924221123,0.417466399061039,0.113027837220111,0.240600322064059,0.416733866704927,0.337566578467469,0.453654918030271,0.813789198567295,0.491505017664911,0.500788709013828,0.530714776138384,0.180022567379363,0.146426027700493,0.295154788563299,-0.209945814386905,0.253772663523745,0.00659686425032355,0.467901410711381,-0.236158223083292,-0.190187222159047,-0.177600010130027,0.123235533833126,-0.0336942372059238,-0.126801564943525,0.491962124692641,0.096220654941042,-0.14326880853165,-0.0887892453054503,0.511262170629424,-0.161601046427057,0.31094016365474,-0.257893962334251,0.127533091835982,0.182776311555928,-0.00860511080504725,-0.152946410506585,-0.516399370850686,-0.143639896485333,-0.100954848684534,-0.0770123758221113,-0.196395556471013,0.182352798409457,0.0132567778841911,0.222417693550916,0.36122789721936,0.37960059690543,0.487979038712985,0.172270653532048,0.611217036825711,0.138982765448043,0.0247979198616105,-0.028776582354021,-0.175582262247643,-0.199789697357165,-0.175719549097579,-0.00944004154674882,0.312700927512533,0.00779276557461695,-0.251337149210336,-0.0630322170944182,0.438422454459662,0.411284109668167,-0.0130327772578784,-0.221741597617311,-0.144817076904119,-0.0992782377585448,0.456019554764823,0.517888726108124,0.253129728221054,0.378892814171309,0.361771910273397,0.371057245558265,0.559330275449301,0.211897178070393,0.212800481091813,0.318540991355547,0.551299711978271,0.205814596561141,-0.0294497472942291,-0.15537820489498,-0.154587115273277,0.396813635395097,0.500362375605476,0.555757015989413,-0.205349447478817,0.0032355550872815,0.0560161798284821,0.582221761566385,0.0411328754828209,0.362488871456651,-0.127120687766309,0.0419922601763296,-0.196953158396846,-0.420273401999989,0.0840379982401467,0.37668269038176,0.23495520112308,0.157586509696559,0.22390597328466,0.189947380164669,0.21272612923537,-0.140762936602338,0.379228774148783,0.178825604116957,0.221468825096107,-0.238385436153079,0.0291790584784969,0.434173997583176,0.175995144588197,0.410842792619802,-0.156514742651817,0.115810231669005,-0.156306034669753,0.23143434487392,0.444939621476523,-0.246575805437513,-0.0540693144796031,0.12195240171486,-0.24076525868794,0.214386726895635,0.283834167550311,0.171906250511197,0.243150306975405,0.509102830907221,0.307083277794419,0.254236549784296,0.296957446852242,0.238339538054669,0.0720486235315481,0.101515788906727,-0.0035239077576372,0.0571600078458084,-0.362587726509447,0.0044539034371218,0.322800412676982,0.0990696855876809,-0.14453580146343,0.319872693217299,-0.120934393781111,-0.23815447493348,-0.118208921553629,-0.0671588181155436,-0.212177726912784,0.554027929361866,0.947269317304289,0.948819536292236,0.942934709626213,0.239386568875293,0.500450751258178,0.122480849867096,0.0383452784149423,0.65862003009318,0.646530221148202,0.582601809753295,0.0879378760215538,-0.20902651865614,-0.309939377526435,0.195897973880985,0.185969826267042,-0.121224510201028,0.158168910563331,0.540765256066985,-0.0147947565670666,-0.0634457335725502,-0.0418479751703454,0.566417644516477,0.0422993080223679,0.21460186589314,0.143497852254378,0.0379475958402009,0.442938318712503,0.244945960562353,-0.0406872211452673,0.490883125658697,0.282092084727831,0.133406095933145,0.102486953294253,0.354815098486388,0.211517917375487,-0.132646258301121,-0.135097032754351,-0.244515478960628,-0.100017982215146,0.136930865092334,0.560400703546359,0.0644708330105479,0.00662541958693985,0.00886835872605563,0.0539521051108821,0.178048983299823,0.248640115774137,0.131672104516603,0.120374483366082,-0.0144561737888612,0.178381137757869,0.142981536700817,-0.134298598570507,0.273592915571208,0.436092138063449,0.38755612431429,0.377848014936766,0.230344046833131,0.260256242978802,0.105145283652289,0.239641080668523,0.0286063165175383,0.148173072095234,0.121433179697741,0.136880626832362,-0.147442056077513,0.0445165445475103,0.0254236659723631,0.240514126797111,0.253035898616137,0.192883971986261,0.0382139121064834,0.0691981161089474,0.210330551584902,-0.0241556784819052,-0.170208102908903,-0.0318942286767567,-0.00080911066336585,0.348595032619615,0.0488356430689268,0.0339640695670404,-0.112542906782589,-0.13778873677503,0.147895651471659,-0.0722465132991115,-0.206023763287831,-0.248669490222463,0.110997918085681,0.192427172087196,-0.0434920732508777,0.263671391080127,0.280805121027234,0.179961068029736,0.132185372506086,0.410336893779853,0.227578553382902,0.411133643800881,0.483956283751561,0.286013784354511,0.596451211714257,0.432552806884331,0.41777082957804,-0.0244111946939216,0.060696637454682,-0.154249402196734,-0.0251370739521791,-0.0136852854882083,0.121270755905286,0.120297500279312,0.270914013456099,0.393131069913151,-0.102027411613925,0.189869970802755,0.147165963888956,-0.00818680222594212,-0.177434411182341,0.252504900708548,0.412843688148092,0.212072284431753,0.384838884852712,0.34282398317174,0.172830407319472,0.285489812358984,0.213151608155727,0.0273946394613176,0.160855334896494,0.636700461554329,-0.0521188333203647,-0.128193782332652,-0.251379253882957,0.0817707009365995,0.0054438107245347,0.0151970286018571,-0.201226737072343,-0.379820854576353,-0.0314046128862005,-0.321674714915095,0.189271376206756,0.668854938920498,0.106341837946105,0.211403655824004,-0.270413669785724,0.216924938668877,0.0991843181380381,-0.161606996986253,-0.00326791810892815,0.111333082429694,0.428292981129898,0.162612749327967,0.080183975170131,-0.259953415500493,0.0699157360931428,-0.0190112133506939,-0.221581314055273,-0.0356809337426063,-0.216281921315268,-0.182231900756904,0.300899120527363,0.210529820243255,-0.180371423851305,-0.198054611035291,-0.0209480585693159,-0.0559577529925783,-0.276502817421609,0.286082923205928,0.221602605335804,-0.17834975635298,-0.248583842635042,0.123290111036261,0.281131829051779,-0.145822887779389,-0.00557950877437905,0.252321616687498,-0.175921384439297,-0.0260153915664602,-0.156409085268345,-0.332648547560274,0.438258501275217,0.413364676156272,0.350541132739423,-0.307116937737294,0.210342692408648,0.0644933966654764,-0.261357730939394,-0.270904665076933,0.313774166945624,0.273615193265584,-0.146125607425532,0.138281687991345,0.12100902393461,0.415905587232817,0.171238525299369,0.14876737455709,0.693855751659945,0.147884962945933,-0.0760334403898808,0.0061913338175595,-0.0756419794114598,0.122642010076263,0.361771846187786,0.152941675004781,0.325528687372722,0.391673932040337,0.248147393263256,-0.170418470293149,0.165175911057177,0.366127228190048,-0.123005857622815,0.181844965934914,0.146631670605981,0.150809394494772,-0.09042873292022,-0.106464777613575,-0.154360050605415,-0.0664392232821269,0.380619692982699,0.0600925444009522,-0.0890548300757525,0.141339606229959,-0.159235106754897,-0.150661873178504,0.104769203346954,0.336229016452538,-0.334919164468256,-0.13681187965541,-0.0452133414829649,-0.0951347847993526,-0.198432501265093,-0.144630255824051,0.474821523455965,0.712025570208717,0.333704517666998,0.416533491343983,0.597405432413055,0.46040061133441,0.642766272519115,-0.414392721379709,-0.366415464062777,0.10353997709992,0.101323060475923,-0.13793005469709,-0.204091317325665,-0.361106147274463,0.0485116147548046,-0.0222665504971225,-0.0391536176934541,-0.155735899492124,0.00605938695481655,0.0898304218419221,-0.313811248231971,-0.0112963560549713,0.0163190240734305,0.201538994259764,0.310640819688927,-0.0320928819639392,0.146560127244311,-0.289069775219898,-0.174350739412291,-0.0365404530788503,0.521941288953981,-0.22612623350978,0.278324638686891|full_id=C1501_hepatocellular_acute_oral_signet_testicular_iPS_teratocarcinoma|gostat_on_coexpression_clusters=GO:0051087!chaperone binding!6.17474325659817e-05!3329;3336$GO:0006986!response to unfolded protein!0.000293224101723009!3329;3336$GO:0051789!response to protein stimulus!0.000293224101723009!3329;3336$GO:0031980!mitochondrial lumen!0.00170046604163955!3329;3336$GO:0005759!mitochondrial matrix!0.00170046604163955!3329;3336$GO:0051082!unfolded protein binding!0.00170046604163955!3329;3336$GO:0009607!response to biotic stimulus!0.00304274984538471!3329;3336$GO:0030150!protein import into mitochondrial matrix!0.00327824217005075!3329$GO:0006457!protein folding!0.00337076692797348!3329;3336$GO:0019907!cyclin-dependent protein kinase activating kinase holoenzyme complex!0.00524472426633574!3329$GO:0042981!regulation of apoptosis!0.0062930254510129!3329;3336$GO:0043067!regulation of programmed cell death!0.0062930254510129!3329;3336$GO:0044429!mitochondrial part!0.0062930254510129!3329;3336$GO:0042221!response to chemical stimulus!0.0062930254510129!3329;3336$GO:0043681!protein import into mitochondrion!0.00757415180743216!3329$GO:0006915!apoptosis!0.0104087539166046!3329;3336$GO:0012501!programmed cell death!0.0104087539166046!3329;3336$GO:0006626!protein targeting to mitochondrion!0.0104087539166046!3329$GO:0016265!death!0.0104087539166046!3329;3336$GO:0008219!cell death!0.0104087539166046!3329;3336$GO:0031974!membrane-enclosed lumen!0.0108082869144582!3329;3336$GO:0043233!organelle lumen!0.0108082869144582!3329;3336$GO:0005739!mitochondrion!0.0109590825739654!3329;3336$GO:0006950!response to stress!0.0150515336650597!3329;3336$GO:0048468!cell development!0.0150515336650597!3329;3336$GO:0006919!caspase activation!0.0150515336650597!3336$GO:0006839!mitochondrial transport!0.0150515336650597!3329$GO:0043280!positive regulation of caspase activity!0.0150515336650597!3336$GO:0007219!Notch signaling pathway!0.0150515336650597!55759$GO:0043281!regulation of caspase activity!0.0174546374220374!3336$GO:0051345!positive regulation of hydrolase activity!0.0213859255099137!3336$GO:0008632!apoptotic program!0.0232212881218106!3336$GO:0007005!mitochondrion organization and biogenesis!0.0232212881218106!3329$GO:0048869!cellular developmental process!0.0232212881218106!3329;3336$GO:0030154!cell differentiation!0.0232212881218106!3329;3336$GO:0017038!protein import!0.0295219359384132!3329$GO:0043231!intracellular membrane-bound organelle!0.0456897064861589!3329;3336;55759$GO:0043227!membrane-bound organelle!0.0456897064861589!3329;3336;55759$GO:0005515!protein binding!0.0458582552281764!3329;3336;55759$GO:0006605!protein targeting!0.0458582552281764!3329$GO:0005524!ATP binding!0.0458582552281764!3329;3336$GO:0032559!adenyl ribonucleotide binding!0.0458582552281764!3329;3336$GO:0030554!adenyl nucleotide binding!0.0485713528048677!3329;3336|id=C1501|ontology_enrichment_celltype=CL:0000066!1.46e-11!253|ontology_enrichment_disease=DOID:14566!4.67e-59!239;DOID:162!1.15e-57!235;DOID:0050687!1.11e-30!143;DOID:0050686!2.95e-28!137;DOID:305!1.26e-25!106;DOID:2531!1.14e-17!51;DOID:0060083!1.14e-17!51;DOID:1240!1.57e-14!39;DOID:8692!5.50e-12!31;DOID:3095!5.08e-07!22;DOID:2994!5.08e-07!22|ontology_enrichment_uberon=UBERON:0001737!9.78e-07!9|tf_chipseq_enrich=ATF3#467;4:14.9754496840058:5.47577390976406e-05:0.000927480297375688!BCLAF1#9774;5:18.0438730084349:1.21080990322265e-06:4.89948762040568e-05!BRCA1#672;5:16.8201922026865:1.71529178571936e-06:6.4766217935193e-05!CHD2#1106;5:8.62001902843071:4.6560374997265e-05:0.000815071908203044!E2F1#1869;5:4.08949101239944:0.00174981759776199:0.0107594465759591!E2F4#1874;5:10.5567169294037:1.71705502564041e-05:0.000392659316450315!E2F6#1876;6:5.01715573169739:6.26776799983417e-05:0.00102505390249715!ELF1#1997;5:3.54841496567295:0.00344683777572169:0.0175319870675789!ELK4#2005;6:16.235681658468:5.45305335722442e-08:3.4432372404786e-06!EP300#2033;5:5.64495143851933:0.000368813893181486:0.00367123086065394!ETS1#2113;6:9.72876092220234:1.17854759771003e-06:4.80618245049739e-05!FOS#2353;5:7.49829609074534:9.22669120642035e-05:0.00134340778322506!FOSL2#2355;5:14.1085005038014:4.09784291596229e-06:0.000130162596198353!FOXA1#3169;6:11.0814197493855:5.39600313513231e-07:2.50690912557866e-05!GABPB1#2553;5:5.88973653015181:0.000300017597367021:0.00309895538041879!GATA1#2623;6:13.5603081438004:1.60671883176178e-07:8.90679979142081e-06!GATA3#2625;5:22.6970969643383:3.87517465667206e-07:1.8868035709472e-05!GTF2B#2959;2:10.6479433114414:0.0135134586576011:0.0477252843480727!HDAC2#3066;5:11.1796835305219:1.29408913564529e-05:0.000317112565081319!HEY1#23462;6:4.04011104310571:0.000229896855580751:0.00253352302416356!HNF4A#3172;6:23.1322903629537:6.51490260560877e-09:5.13516915643151e-07!HNF4G#3174;6:28.7534225264468:1.76556713337063e-09:1.54046838631659e-07!HSF1#3297;5:136.908888888889:4.94363085166209e-11:5.56966410481917e-09!IRF4#3662;4:14.6096751244961:6.03404227507469e-05:0.000991487320903911!JUN#3725;5:10.4273576602803:1.82465747415735e-05:0.000415446701424721!JUND#3727;5:5.82888661822586:0.000315568248503075:0.00323462874721883!MAX#4149;6:6.45255550900712:1.3848964723355e-05:0.000334575995082692!MEF2A#4205;5:15.61935909137:2.47611227471544e-06:8.74248444418545e-05!MEF2C#4208;5:34.4261287438534:4.87546598482441e-08:3.1450820999943e-06!MXI1#4601;6:9.9615716287593:1.02262624227062e-06:4.30306454941583e-05!MYC#4609;6:5.2222818716094:4.92821127172503e-05:0.000854553307334702!NFKB1#4790;6:5.48806342419384:3.65870229532191e-05:0.000707744413819457!NR2C2#7182;6:32.6146109052409:8.2872822148748e-10:7.78341247517364e-08!NR3C1#2908;5:12.4775194426442:7.52342219908436e-06:0.000214976386060238!NRF1#4899;5:10.1752328730924:2.0585884796849e-05:0.000455501953876718!PAX5#5079;5:5.55797127598152:0.000397717619661286:0.00388707004302873!POLR2A#5430;6:2.14745317655807:0.0101957067681878:0.0380568055454884!POU2F2#5452;5:7.58843671478544:8.70203885493171e-05:0.00129095488063951!PPARGC1A#10891;5:291.70928030303:1.11748890111184e-12:1.56237514515688e-10!REST#5978;4:6.43335247741868:0.00145495422303207:0.00932633426006546!RFX5#5993;5:10.0399256893292:2.19894173045095e-05:0.00048267186924457!RXRA#6256;5:16.7288476159444:1.76223204684013e-06:6.62750279942156e-05!SETDB1#9869;5:33.6000218150087:5.50253359077372e-08:3.45567712379324e-06!SIN3A#25942;6:5.40888472681514:3.99207083571449e-05:0.000743319461599546!SIX5#147912;6:17.086715355459:4.01311308210759e-08:2.65269314672301e-06!SP1#6667;5:4.74865114845075:0.000852370402732661:0.00641822007865872!SRF#6722;6:13.7971782621678:1.44812893459755e-07:8.17519663786129e-06!STAT1#6772;5:17.2554895809993:1.51117799335256e-06:5.8195397657724e-05!STAT3#6774;5:8.76622083096187:4.28672496720299e-05:0.000766480515065421!TAF1#6872;6:3.34304628574529:0.000716247428463562:0.00573519628776401!TAF7#6879;6:11.4330694049239:4.47357982339933e-07:2.12757833868854e-05!TBP#6908;6:3.70677068709639:0.00038541647290796:0.00378028841228723!TCF7L2#6934;5:8.97514713594779:3.818060286338e-05:0.000720033221821695!TFAP2C#7022;5:9.00769050821686:3.75071472654799e-05:0.000723934384265285!TRIM28#10155;6:18.5905250452625:2.41896703530258e-08:1.69553354496622e-06!USF1#7391;6:6.36149927720796:1.50818327938273e-05:0.000357010774060411!USF2#7392;5:10.8268311542247:1.51592052313491e-05:0.000358598467759201!YY1#7528;6:4.91117074985386:7.12445972864136e-05:0.00112414480978936!ZBTB33#10009;5:26.3872708583176:1.83222607625143e-07:1.00081516306288e-05!ZNF143#7702;6:13.5008765522279:1.64963374888971e-07:9.12532304556633e-06|tfbs_overrepresentation=0.272825,0.113895,0.247595,0.093154,0.000101294,0.492787,0.0841651,0.657264,0.0643695,0.0507505,0.259407,0.000189714,0.341907,0.236085,0.275252,0.119969,0.262088,0.18676,0.102909,4.31191e-06,0.341686,1.2255e-05,0.157234,0.00113894,0.0814159,0.384547,0.000129357,0.0159512,0.266831,0.178021,0.3679,0.215086,0.0357376,0.373119,0.128625,0.161809,0.0100098,0.0840902,0.226218,0.128959,0.183651,0.0486174,0.260466,0.334176,0.227213,0.00259488,0.074588,0.330075,0.210181,0.227712,0.0449375,0.105423,0.135407,0.177342,0.0735121,0.00291343,0.203364,0.380173,0.150513,0.199999,0.00171514,0.276509,0.205409,0.146128,0.10616,0.0984283,0.580456,0.116417,0.164736,0.3062,0.246808,0.130776,0.170145,0.224513,0.0148962,0.0339424,0.183676,0.0854797,0.0731115,0.0144524,0.182113,0.402334,0.0831938,0.0253391,0.151894,0.440248,0.124542,0.37437,0.0125393,0.121557,0.164159,0.0967167,0.181667,0.0925031,0.163486,0.216824,0.102122,0.28366,0.17689,0.473112,0.111667,0.476145,0.263619,0.0727591,0.390176,0.080182,0.12949,0.561883,0.267635,0.466115,0.331856,0.0668385,0.00445412,0.0350582,0.192196,0.0663658,0.0402636,0.1101,0.258716,0.160649,0.305628,0.383317,0.260612,0.164207,0.194257,0.322526,0.173151,0.0293679,0.161604,0.251658,0.00695579,0.144069,0.111159,0.045053,0.235761,0.204515,0.125521,0.10761,0.0649881,0.00789487,0.0450332,0.238929,0.366262,0.28766,0.037535,0.133829,0.0188719,0.161361,0.0763672,0.227065,0.361034,0.266711,0.328768,0.0524571,0.0835935,0.221281,0.14393,0.40461,0.100724,0.0663128,0.403582,0.181487,0.0261205,0.273735,0.472167,0.215506,0.0784618,0.238515,0.0790799,0.526782,0.327089,0.256483,0.354336,0.10534,0.153476,0.172044,0.260974,0.330576,0.0597174,0.069998,0.292457,8.16996e-06,0.0540612,0.21779,0.142014,0.223569,0.332561,0.0787371,0.158872,0.317,0.20281,0.339514,0.230757,0.405269,0.212647,0.0919303,0.150381,0.116937,0.130723,0.207318,0.170629,0.117148,0.0607132,0.117534,0.254283,0.451528,0.472314,0.280641,0.370039,0.324906,0.0896296,0.197823,0.22763,0.213053,0.527451,0.309534,0.0508434,0.191696,0.000333247,0.195373,0.263715,0.606181,0.287766,0.296123,0.142265,0.237192,0.258424,0.164555,0.117251,0.116204,0.239261,0.62151,0.0819301,0.147153,0.18264,0.177704,0.092224,0.45696,0.30027,0.383466,0.331647,0.57619,0.187116,0.15928,0.219044,0.254951,0.156377,0.21083,0.606625,0.0262895,0.292806,0.336043,0.336985,0.186448,0.186558,0.293852,0.202983,0.362971,0.134325,0.0326625,0.120009,0.319541,0.300061,0.239783,0.0678354,0.155564,0.15574,0.175654,0.222213,0.145331,0.479224,0.122578,0.118009,0.117045,0.165683,0.0746442,0.243403,0.827706,0.712305,0.194104,0.86741,0.809072,0.673858,0.00216193,0.558337,0.590159,0.454695,0.693419,0.240636,0.169789,0.741357,0.0478627,0.635008,0.0473744,0.020035,0.569904,0.469955,0.498953,0.646895,0.63674,0.825036,0.837729,0.339439,0.593966,0.33041,0.6682,0.207878,0.192512,0.388991,0.671702,0.611777,0.711836,0.875797,0.777522,0.770331,0.604085,0.658531,0.382099,0.442844,0.477024,0.512499,0.731446,0.53335,0.397052,0.753214,0.842556,0.486953,0.530428,0.514143,0.152268,0.695401,0.512667,0.659897,0.499918,0.371535,0.685903,0.607959,0.821595,0.559875,0.331481,0.102292,0.668512,0.936421,0.474883,0.417024,0.336852,0.572701,0.78433,0.468536,0.860083,0.0141966,0.0159972,0.771595,0.43545,0.483867,0.365638,0.29984,0.129605,0.140844,0.335439,0.0107976,0.548986,0.520224,0.0926191,0.651648,0.794645,0.47635,0.69534,0.0882078,0.527767,0.0342474,0.0881806,0.143918,0.405564,6.94494e-05,0.831347,0.40641,0.502548,0.568759,0.142315,0.494769,0.547216,0.00933889,0.47878,0.0196266,0.308133,0.404165,0.559521,0.356202,0.288188,0.499303,0.665296,0.73237,0.664325,0.766191,0.00241551,0.557914,0.268648,0.269896,0.622411,0.610862,0.69455,0.708323,0.440842,0.282051,0.0909735,0.2554,0.451268,0.251408,0.187452,0.794085,0.154216,0.488193,0.569315,0.519135,0.518055,0.280048,0.753073,0.772364,0.488244,0.456149,0.00224425,0.401321,0.647111,0.660192,0.595103,0.713637,0.000164432,0.369917,0.774751,0.0629603,0.109766,0.46597,0.563445,0.47744,0.483651,0.263421,0.342907,0.0619339,0.293756,0.42025,0.605969,0.410562,0.343113,0.170331,0.115576,0.188364,0.583972,0.57398,0.78784,0.577344,0.369266,0.645462,0.606765,0.320598,0.532388,0.134669,0.108266,8.36942e-05,0.149912,0.111821,0.267815,0.396879,0.00124893,0.689622,0.324994,0.346776,0.211334,0.494962,0.0851816,0.514659,0.23696,0.251518,0.202355,0.471945,0.121642,0.617317,0.0354999,0.515499,0.481305,0.0183745,0.0908048,0.310441,0.216037,0.198185,0.171816,0.165877,0.294115,0.202749,0.0858038,0.00776602,0.23191,0.241631,0.376483,0.349839,0.572771,0.0974547,0.15892,0.128942,0.331179,0.210172,0.390637,0.554857,0.0712575,0.246924,0.000914409,0.0940377,0.0743553,0.64718,0.239194,0.32067,0.334938,0.309827,0.167604,0.0175483,0.0223847,0.395388,0.202628,0.0276674,0.00960329,0.317242,0.262323,0.378417,0.0592343,0.245796,0.0870651,0.101982,0.374106,0.282907,0.153213,0.185351,0.29465,0.231794,0.173078,0.108497,0.143495,0.428172,0.255803,0.0289867,0.127078,7.24045e-07,0.392439,0.153874,0.145835,0.297422,3.67203e-07,0.106792,0.149864,0.109211,0.081783,0.0678906,0.076236,0.444489,0.31161,0.361651,0.0953991,0.319245,0.603631,0.0650516,0.575882,0.390908,0.0773818,0.115736,0.662745,0.229952,0.205891,0.207936,0.454529,0.0563868,0.473176,0.268235,0.0761868,0.167255,0.107028,0.267379,0.443026,0.387018,0.343977,0.244992,0.632847,0.417985,0.0313468,0.146453,0.315229,0.157053,0.332022,0.19701,0.273582,0.262915,0.306556,1.65734e-05,0.170005,0.0069951,0.147801,0.092369,0.18076,0.692556,0.248113,0.148878,0.206465,0.240599,0.245625,0.205821,0.3342,0.100989,0.188919,0.0975693,0.119835,0.145322,0.178533,0.267392,0.0668831,0.142859,0.00442265,0.284137,0.628069,0.387334,0.149927,0.224219,0.347904,0.324262,0.213422,0.111827,0.0929171,0.63152,0.118035,0.319902,0.510835,0.137556,0.397628,0.49748,0.0699003,0.235435,0.31953,0.0265517,0.00170313,0.370285,0.388777,0.204831,0.130161,0.205669,0.0963721,0.182511,0.369139,0.145449,0.0892237,0.208284,0.135613,0.0941132,0.283386,0.0739625,0.247651,0.0879809,0.104922,0.215434,0.177269,0.31512,0.198881,0.394164,0.00640998,0.4137,0.146194,7.46187e-05,0.281527,0.35188,0.3889,0.192889,0.0463105,0.316041,0.565635,0.280212,0.121421,0.346061,0.275075,0.167651,0.287361,0.138613,0.175356,0.116846,0.267784,0.278571,0.0183354,0.286026,0.31159,0.349805,0.255609,0.404239,0.439697,0.493192,0.0271768,0.160738,0.553042,0.213489,0.212611,0.338443,0.0573663,0.180695,0.45842,0.436073,0.261316,0.189596,0.448839,0.196587,0.213353,0.0504588,0.307626,0.173101,0.828194,0.00619623,0.341713,0.156156,0.33569,0.00508021,0.526446,0.761719,0.114697,0.111558,0.324956,0.388835,0.408751,0.021944,0.0469515,0.070868,0.00471432,0.245,0.0850317,0.249379,0.294768,0.60218,0.696439,0.648789,0.409327,0.792771,0.685907,0.0669107,0.101812,0.334228,0.355968,0.636386,0.592254,0.647186,0.0730099,0.82397,0.0586453,0.312447,0.117176,0.260486,0.737948,0.750579,0.689958,0.435483,0.000118059,0.230665,0.402631,0.181689,0.573004,0.0176172,0.488239,0.167812,0.799242,0.735002,0.494578,0.301433,0.129825,0.492887,0.819065,0.727698,0.559471,0.717449,0.449761,0.6937,0.427531,0.000295852,0.26122,0.0017106,0.403716,0.297082,0.000628809,0.8738,0.746016,0.000133253,0.607585,0.000358733,0.72684,0.0133348,0.296598,0.343078,0.36546,0.360788,0.368898,0.510705,0.119581,0.670481,0.576455,0.619669,0.287839,0.262665,1.56903e-05,0.183051,0.530004,0.583703,0.300816,0.407994,0.225997,0.487688,0.808511,0.175134,0.329919,0.484887,0.00403731,0.57085,0.650025,0.766238,0.540605,0.629269,0.563634,0.561918,0.624569,0.772094,0.00618004,0.455987,0.394773,0.0951608,0.659285,0.711322,0.130129,0.516717,0.367684,0.700165,0.258457,0.188291,0.305952,0.356524,0.159817,0.532764,0.730276,0.319704,0.555004,0.607569,0.773067,0.283145,0.597394,0.198803,0.628973,0.22846,0.0174677,0.365565,0.47205,0.00285239,0.116922,0.578885,0.474879,0.331214,0.518205,0.424119,0.60488,0.519279,0.515179,0.745866,0.623664,0.0150089,0.114691,0.000498608,0.346229,0.754688,0.39196,0.758981,0.355152,0.346355,0.712437,0.00065111,0.520214,0.708106,0.486574,0.809543,0.138503,0.0202527,0.471879,0.600697,0.474504,0.621275,0.727464,0.589415,0.564042,0.356483,0.28925,0.624316,0.55481,0.0660081,0.509842,0.866311,0.368631,0.321667,0.149733,0.477082,0.368449,0.066291,0.00907694,0.450702,0.341084,0.138667,0.459605,0.298707,0.0681033,0.299527,0.390707,0.372757,0.172033,0.181635,0.304651,0.440771,0.613566,0.118662,0.371991,0.694395,0.326635,0.349721,0.39301,0.396235,0.566617,0.524829,0.388491,0.357781,0.338712,0.0291267,0.359148,0.0641227,0.177916,0.232711,0.327419,0.402268,0.139798,0.0142145,0.245045,0.373321,0.433875,0.395243,0.130132,0.373481,0.462042,0.213394,0.270174,0.406219,0.298,0.40549,0.00639639,0.0755079,0.12783,0.101672,0.0890286,0.465261,0.362561,0.578088,0.285875,0.225945,0.18761,0.20516,0.115576,0.385234,0.000449072,0.392097,0.352327,0.232997,0.451856,0.168458,0.328594,0.294205,0.448388,0.0430662,0.387086,0.232479,0.334662,0.336321,0.139427,0.450171,0.454978,0.366035,0.381922,0.372037,0.0382775,0.3488,0.43615,0.218495,0.398705,0.431643,0.316114,0.0746849,0.26003,0.35537,0.423126,0.0463025,0.244977,0.447896,0.395958,0.314638,0.322324,0.184473,0.363414,0.524458,0.482957,0.000160147,0.0131473,0.3633,0.202084,0.104337,0.104656,0.279419,0.149946,0.0797883,0.104584,0.537494,0.454949,0.00145302,0.340219,0.412672,0.343186,0.155969,0.186603,0.124175,0.228962,0.12366,0.198264,0.128253,0.14669,0.240899,0.206424,0.0862744,0.129421,0.171188,0.0721407,0.251724,0.0113565,0.504058,0.491191,0.573638,0.263371,0.457065,0.00318935,0.360168,0.403229,9.624e-05,0.442751,0.323763,0.486842,0.458912,0.246162,0.295506,0.369944,0.358783,0.491474,0.417013,0.544575,0.21822,0.388558,0.397562,0.21727,0.351946,0.345508,0.484083,0.0301322,0.437432,0.302171,0.398223,0.00109207,0.0465451,0.400541,0.372405,0.182559,0.0143347,0.533328,0.313891,0.292462,0.46896,0.137165,0.467981,0.191837,0.0912568,0.320916,0.0467676,0.384881,0.441686,0.369492,0.0623741|tfbs_overrepresentation_for_novel_motifs=1.97464,0.333388,1.11302,0.58616,0.393082,1.42848,0.662701,0.269608,0.736703,0.262261,1.36279,0.707204,0.223349,0.650887,0.391663,0.415981,3.40298,0.336106,0.236034,0.127969,0.436569,1.03374,2.41159,1.78264,0.483957,0.730467,2.45943,0.574247,1.02557,0.547818,2.26243,0.92701,0.816912,0.640661,3.47501,0.0334022,2.51365,0.585658,0.329602,0.248856,0.355745,0.513952,0.0979105,0.390088,0.154075,0.468392,3.91207,0.542147,0.0909286,0.396429,0.745008,0.675919,0.455399,2.29597,1.15929,0.653901,0.400834,1.50361,0.186533,0.619193,0.968558,2.7005,0.267534,0.861462,0.684675,0.826413,1.24834,1.61834,0.916468,3.20696,1.25018,0.275507,4.31331,1.15727,1.17153,0.206105,0.192925,0.84426,0.913168,0.477584,0.240887,2.00082,0.684313,0.272514,1.10535,0.717596,0.398737,1.62415,0.771626,1.71797,1.34233,1.07807,0.94406,0.30974,4.76723,0.32338,0.234532,0.987239,1.82799,0.166235,0.330999,0.938327,0.981588,0.893363,0.814675,2.321,0.877269,0.647343,2.10687,0.376529,0.44815,0.978783,0.430775,0.563054,1.29401,0.352243,1.21803,0.529546,0.824029,0.840396,1.14892,0.769145,0.581628,0.695878,1.40534,0.845034,0.656181,0.949126,2.67532,0.324369,1.07876,0.53374,1.20639,0.692462,1.35529,0.175219,0.524606,0.57483,1.31259,2.17352,1.7705,1.27501,0.657956,0.983666,0.816466,0.611524,0.799467,2.01411,1.27188,1.49651,0.424432,3.49696,1.07915,0.258882,0.665754,1.48627,0.755083,0.378604,0.484017,0.454152,1.27379,2.40891,0.912368,2.01935,0.83286,0.683502,0.79772,0.661335,0.792495|tfbs_overrepresentation_jaspar=MA0003.1;3.05245,MA0004.1;1.37419,MA0006.1;1.01439,MA0007.1;0.539222,MA0009.1;1.03681,MA0014.1;0.491287,MA0017.1;3.92583,MA0019.1;0.7124,MA0024.1;0.929647,MA0025.1;1.17262,MA0027.1;2.65688,MA0028.1;0.408079,MA0029.1;0.949428,MA0030.1;0.937696,MA0031.1;0.871496,MA0038.1;0.665566,MA0040.1;0.955415,MA0041.1;0.578072,MA0042.1;0.544748,MA0043.1;1.03713,MA0046.1;1.02569,MA0048.1;0.464411,MA0050.1;0.545671,MA0051.1;0.661179,MA0052.1;0.959373,MA0055.1;0.0586456,MA0056.1;0,MA0057.1;1.41984,MA0058.1;1.16137,MA0059.1;0.457555,MA0060.1;0.267412,MA0061.1;0.23892,MA0063.1;0,MA0066.1;0.66601,MA0067.1;1.35893,MA0068.1;0.199491,MA0069.1;1.02175,MA0070.1;1.01032,MA0071.1;0.625297,MA0072.1;1.00572,MA0073.1;0.0569999,MA0074.1;0.660398,MA0076.1;0.475586,MA0077.1;0.997832,MA0078.1;0.763954,MA0081.1;0.457725,MA0083.1;1.04447,MA0084.1;1.5477,MA0087.1;1.00322,MA0088.1;0.32124,MA0089.1;0,MA0090.1;0.490736,MA0091.1;0.561458,MA0092.1;0.522012,MA0093.1;1.80532,MA0095.1;0,MA0098.1;0,MA0100.1;0.679972,MA0101.1;0.397846,MA0103.1;0.381434,MA0105.1;0.134725,MA0106.1;1.68738,MA0107.1;0.320267,MA0108.2;0.868347,MA0109.1;0,MA0111.1;0.504913,MA0113.1;0.725375,MA0114.1;2.32368,MA0115.1;1.28169,MA0116.1;0.323925,MA0117.1;3.97537,MA0119.1;0.440684,MA0122.1;1.10154,MA0124.1;1.23968,MA0125.1;1.15445,MA0130.1;0,MA0131.1;0.782708,MA0132.1;0,MA0133.1;0,MA0135.1;1.06778,MA0136.1;0.672893,MA0139.1;0.226048,MA0140.1;0.622527,MA0141.1;0.455728,MA0142.1;0.838805,MA0143.1;0.725558,MA0144.1;1.47313,MA0145.1;1.16614,MA0146.1;0.718193,MA0147.1;1.57246,MA0148.1;0.584698,MA0149.1;0.612449,MA0062.2;2.67639,MA0035.2;0.621793,MA0039.2;0.82735,MA0138.2;0.765223,MA0002.2;0.255126,MA0137.2;6.08217,MA0104.2;2.08061,MA0047.2;0.695777,MA0112.2;0.101413,MA0065.2;0.718489,MA0150.1;0.484557,MA0151.1;0,MA0152.1;0.629368,MA0153.1;1.13732,MA0154.1;1.92418,MA0155.1;0.0961854,MA0156.1;1.88357,MA0157.1;0.810597,MA0158.1;0,MA0159.1;0.328286,MA0160.1;0.600559,MA0161.1;0,MA0162.1;0.0383129,MA0163.1;2.08316,MA0164.1;0.738243,MA0080.2;0.394469,MA0018.2;0.709805,MA0099.2;0.629739,MA0079.2;1.19591,MA0102.2;1.58513,MA0258.1;0.289793,MA0259.1;0.336472,MA0442.1;0}} | ||
| | |||
}} |
Latest revision as of 11:46, 17 September 2013
Full id: C1501_hepatocellular_acute_oral_signet_testicular_iPS_teratocarcinoma
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0051087 | chaperone binding | 6.17474325659817e-05 |
GO:0006986 | response to unfolded protein | 0.000293224101723009 |
GO:0051789 | response to protein stimulus | 0.000293224101723009 |
GO:0031980 | mitochondrial lumen | 0.00170046604163955 |
GO:0005759 | mitochondrial matrix | 0.00170046604163955 |
GO:0051082 | unfolded protein binding | 0.00170046604163955 |
GO:0009607 | response to biotic stimulus | 0.00304274984538471 |
GO:0030150 | protein import into mitochondrial matrix | 0.00327824217005075 |
GO:0006457 | protein folding | 0.00337076692797348 |
GO:0019907 | cyclin-dependent protein kinase activating kinase holoenzyme complex | 0.00524472426633574 |
GO:0042981 | regulation of apoptosis | 0.0062930254510129 |
GO:0043067 | regulation of programmed cell death | 0.0062930254510129 |
GO:0044429 | mitochondrial part | 0.0062930254510129 |
GO:0042221 | response to chemical stimulus | 0.0062930254510129 |
GO:0043681 | protein import into mitochondrion | 0.00757415180743216 |
GO:0006915 | apoptosis | 0.0104087539166046 |
GO:0012501 | programmed cell death | 0.0104087539166046 |
GO:0006626 | protein targeting to mitochondrion | 0.0104087539166046 |
GO:0016265 | death | 0.0104087539166046 |
GO:0008219 | cell death | 0.0104087539166046 |
GO:0031974 | membrane-enclosed lumen | 0.0108082869144582 |
GO:0043233 | organelle lumen | 0.0108082869144582 |
GO:0005739 | mitochondrion | 0.0109590825739654 |
GO:0006950 | response to stress | 0.0150515336650597 |
GO:0048468 | cell development | 0.0150515336650597 |
GO:0006919 | caspase activation | 0.0150515336650597 |
GO:0006839 | mitochondrial transport | 0.0150515336650597 |
GO:0043280 | positive regulation of caspase activity | 0.0150515336650597 |
GO:0007219 | Notch signaling pathway | 0.0150515336650597 |
GO:0043281 | regulation of caspase activity | 0.0174546374220374 |
GO:0051345 | positive regulation of hydrolase activity | 0.0213859255099137 |
GO:0008632 | apoptotic program | 0.0232212881218106 |
GO:0007005 | mitochondrion organization and biogenesis | 0.0232212881218106 |
GO:0048869 | cellular developmental process | 0.0232212881218106 |
GO:0030154 | cell differentiation | 0.0232212881218106 |
GO:0017038 | protein import | 0.0295219359384132 |
GO:0043231 | intracellular membrane-bound organelle | 0.0456897064861589 |
GO:0043227 | membrane-bound organelle | 0.0456897064861589 |
GO:0005515 | protein binding | 0.0458582552281764 |
GO:0006605 | protein targeting | 0.0458582552281764 |
GO:0005524 | ATP binding | 0.0458582552281764 |
GO:0032559 | adenyl ribonucleotide binding | 0.0458582552281764 |
GO:0030554 | adenyl nucleotide binding | 0.0485713528048677 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.46e-11 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.78e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 4.67e-59 | 239 |
cancer | 1.15e-57 | 235 |
cell type cancer | 1.11e-30 | 143 |
organ system cancer | 2.95e-28 | 137 |
carcinoma | 1.26e-25 | 106 |
hematologic cancer | 1.14e-17 | 51 |
immune system cancer | 1.14e-17 | 51 |
leukemia | 1.57e-14 | 39 |
myeloid leukemia | 5.50e-12 | 31 |
germ cell and embryonal cancer | 5.08e-07 | 22 |
germ cell cancer | 5.08e-07 | 22 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 3.05245 |
MA0004.1 | 1.37419 |
MA0006.1 | 1.01439 |
MA0007.1 | 0.539222 |
MA0009.1 | 1.03681 |
MA0014.1 | 0.491287 |
MA0017.1 | 3.92583 |
MA0019.1 | 0.7124 |
MA0024.1 | 0.929647 |
MA0025.1 | 1.17262 |
MA0027.1 | 2.65688 |
MA0028.1 | 0.408079 |
MA0029.1 | 0.949428 |
MA0030.1 | 0.937696 |
MA0031.1 | 0.871496 |
MA0038.1 | 0.665566 |
MA0040.1 | 0.955415 |
MA0041.1 | 0.578072 |
MA0042.1 | 0.544748 |
MA0043.1 | 1.03713 |
MA0046.1 | 1.02569 |
MA0048.1 | 0.464411 |
MA0050.1 | 0.545671 |
MA0051.1 | 0.661179 |
MA0052.1 | 0.959373 |
MA0055.1 | 0.0586456 |
MA0056.1 | 0 |
MA0057.1 | 1.41984 |
MA0058.1 | 1.16137 |
MA0059.1 | 0.457555 |
MA0060.1 | 0.267412 |
MA0061.1 | 0.23892 |
MA0063.1 | 0 |
MA0066.1 | 0.66601 |
MA0067.1 | 1.35893 |
MA0068.1 | 0.199491 |
MA0069.1 | 1.02175 |
MA0070.1 | 1.01032 |
MA0071.1 | 0.625297 |
MA0072.1 | 1.00572 |
MA0073.1 | 0.0569999 |
MA0074.1 | 0.660398 |
MA0076.1 | 0.475586 |
MA0077.1 | 0.997832 |
MA0078.1 | 0.763954 |
MA0081.1 | 0.457725 |
MA0083.1 | 1.04447 |
MA0084.1 | 1.5477 |
MA0087.1 | 1.00322 |
MA0088.1 | 0.32124 |
MA0089.1 | 0 |
MA0090.1 | 0.490736 |
MA0091.1 | 0.561458 |
MA0092.1 | 0.522012 |
MA0093.1 | 1.80532 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.679972 |
MA0101.1 | 0.397846 |
MA0103.1 | 0.381434 |
MA0105.1 | 0.134725 |
MA0106.1 | 1.68738 |
MA0107.1 | 0.320267 |
MA0108.2 | 0.868347 |
MA0109.1 | 0 |
MA0111.1 | 0.504913 |
MA0113.1 | 0.725375 |
MA0114.1 | 2.32368 |
MA0115.1 | 1.28169 |
MA0116.1 | 0.323925 |
MA0117.1 | 3.97537 |
MA0119.1 | 0.440684 |
MA0122.1 | 1.10154 |
MA0124.1 | 1.23968 |
MA0125.1 | 1.15445 |
MA0130.1 | 0 |
MA0131.1 | 0.782708 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.06778 |
MA0136.1 | 0.672893 |
MA0139.1 | 0.226048 |
MA0140.1 | 0.622527 |
MA0141.1 | 0.455728 |
MA0142.1 | 0.838805 |
MA0143.1 | 0.725558 |
MA0144.1 | 1.47313 |
MA0145.1 | 1.16614 |
MA0146.1 | 0.718193 |
MA0147.1 | 1.57246 |
MA0148.1 | 0.584698 |
MA0149.1 | 0.612449 |
MA0062.2 | 2.67639 |
MA0035.2 | 0.621793 |
MA0039.2 | 0.82735 |
MA0138.2 | 0.765223 |
MA0002.2 | 0.255126 |
MA0137.2 | 6.08217 |
MA0104.2 | 2.08061 |
MA0047.2 | 0.695777 |
MA0112.2 | 0.101413 |
MA0065.2 | 0.718489 |
MA0150.1 | 0.484557 |
MA0151.1 | 0 |
MA0152.1 | 0.629368 |
MA0153.1 | 1.13732 |
MA0154.1 | 1.92418 |
MA0155.1 | 0.0961854 |
MA0156.1 | 1.88357 |
MA0157.1 | 0.810597 |
MA0158.1 | 0 |
MA0159.1 | 0.328286 |
MA0160.1 | 0.600559 |
MA0161.1 | 0 |
MA0162.1 | 0.0383129 |
MA0163.1 | 2.08316 |
MA0164.1 | 0.738243 |
MA0080.2 | 0.394469 |
MA0018.2 | 0.709805 |
MA0099.2 | 0.629739 |
MA0079.2 | 1.19591 |
MA0102.2 | 1.58513 |
MA0258.1 | 0.289793 |
MA0259.1 | 0.336472 |
MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
ATF3#467 | 4 | 14.9754496840058 | 5.47577390976406e-05 | 0.000927480297375688 |
BCLAF1#9774 | 5 | 18.0438730084349 | 1.21080990322265e-06 | 4.89948762040568e-05 |
BRCA1#672 | 5 | 16.8201922026865 | 1.71529178571936e-06 | 6.4766217935193e-05 |
CHD2#1106 | 5 | 8.62001902843071 | 4.6560374997265e-05 | 0.000815071908203044 |
E2F1#1869 | 5 | 4.08949101239944 | 0.00174981759776199 | 0.0107594465759591 |
E2F4#1874 | 5 | 10.5567169294037 | 1.71705502564041e-05 | 0.000392659316450315 |
E2F6#1876 | 6 | 5.01715573169739 | 6.26776799983417e-05 | 0.00102505390249715 |
ELF1#1997 | 5 | 3.54841496567295 | 0.00344683777572169 | 0.0175319870675789 |
ELK4#2005 | 6 | 16.235681658468 | 5.45305335722442e-08 | 3.4432372404786e-06 |
EP300#2033 | 5 | 5.64495143851933 | 0.000368813893181486 | 0.00367123086065394 |
ETS1#2113 | 6 | 9.72876092220234 | 1.17854759771003e-06 | 4.80618245049739e-05 |
FOS#2353 | 5 | 7.49829609074534 | 9.22669120642035e-05 | 0.00134340778322506 |
FOSL2#2355 | 5 | 14.1085005038014 | 4.09784291596229e-06 | 0.000130162596198353 |
FOXA1#3169 | 6 | 11.0814197493855 | 5.39600313513231e-07 | 2.50690912557866e-05 |
GABPB1#2553 | 5 | 5.88973653015181 | 0.000300017597367021 | 0.00309895538041879 |
GATA1#2623 | 6 | 13.5603081438004 | 1.60671883176178e-07 | 8.90679979142081e-06 |
GATA3#2625 | 5 | 22.6970969643383 | 3.87517465667206e-07 | 1.8868035709472e-05 |
GTF2B#2959 | 2 | 10.6479433114414 | 0.0135134586576011 | 0.0477252843480727 |
HDAC2#3066 | 5 | 11.1796835305219 | 1.29408913564529e-05 | 0.000317112565081319 |
HEY1#23462 | 6 | 4.04011104310571 | 0.000229896855580751 | 0.00253352302416356 |
HNF4A#3172 | 6 | 23.1322903629537 | 6.51490260560877e-09 | 5.13516915643151e-07 |
HNF4G#3174 | 6 | 28.7534225264468 | 1.76556713337063e-09 | 1.54046838631659e-07 |
HSF1#3297 | 5 | 136.908888888889 | 4.94363085166209e-11 | 5.56966410481917e-09 |
IRF4#3662 | 4 | 14.6096751244961 | 6.03404227507469e-05 | 0.000991487320903911 |
JUN#3725 | 5 | 10.4273576602803 | 1.82465747415735e-05 | 0.000415446701424721 |
JUND#3727 | 5 | 5.82888661822586 | 0.000315568248503075 | 0.00323462874721883 |
MAX#4149 | 6 | 6.45255550900712 | 1.3848964723355e-05 | 0.000334575995082692 |
MEF2A#4205 | 5 | 15.61935909137 | 2.47611227471544e-06 | 8.74248444418545e-05 |
MEF2C#4208 | 5 | 34.4261287438534 | 4.87546598482441e-08 | 3.1450820999943e-06 |
MXI1#4601 | 6 | 9.9615716287593 | 1.02262624227062e-06 | 4.30306454941583e-05 |
MYC#4609 | 6 | 5.2222818716094 | 4.92821127172503e-05 | 0.000854553307334702 |
NFKB1#4790 | 6 | 5.48806342419384 | 3.65870229532191e-05 | 0.000707744413819457 |
NR2C2#7182 | 6 | 32.6146109052409 | 8.2872822148748e-10 | 7.78341247517364e-08 |
NR3C1#2908 | 5 | 12.4775194426442 | 7.52342219908436e-06 | 0.000214976386060238 |
NRF1#4899 | 5 | 10.1752328730924 | 2.0585884796849e-05 | 0.000455501953876718 |
PAX5#5079 | 5 | 5.55797127598152 | 0.000397717619661286 | 0.00388707004302873 |
POLR2A#5430 | 6 | 2.14745317655807 | 0.0101957067681878 | 0.0380568055454884 |
POU2F2#5452 | 5 | 7.58843671478544 | 8.70203885493171e-05 | 0.00129095488063951 |
PPARGC1A#10891 | 5 | 291.70928030303 | 1.11748890111184e-12 | 1.56237514515688e-10 |
REST#5978 | 4 | 6.43335247741868 | 0.00145495422303207 | 0.00932633426006546 |
RFX5#5993 | 5 | 10.0399256893292 | 2.19894173045095e-05 | 0.00048267186924457 |
RXRA#6256 | 5 | 16.7288476159444 | 1.76223204684013e-06 | 6.62750279942156e-05 |
SETDB1#9869 | 5 | 33.6000218150087 | 5.50253359077372e-08 | 3.45567712379324e-06 |
SIN3A#25942 | 6 | 5.40888472681514 | 3.99207083571449e-05 | 0.000743319461599546 |
SIX5#147912 | 6 | 17.086715355459 | 4.01311308210759e-08 | 2.65269314672301e-06 |
SP1#6667 | 5 | 4.74865114845075 | 0.000852370402732661 | 0.00641822007865872 |
SRF#6722 | 6 | 13.7971782621678 | 1.44812893459755e-07 | 8.17519663786129e-06 |
STAT1#6772 | 5 | 17.2554895809993 | 1.51117799335256e-06 | 5.8195397657724e-05 |
STAT3#6774 | 5 | 8.76622083096187 | 4.28672496720299e-05 | 0.000766480515065421 |
TAF1#6872 | 6 | 3.34304628574529 | 0.000716247428463562 | 0.00573519628776401 |
TAF7#6879 | 6 | 11.4330694049239 | 4.47357982339933e-07 | 2.12757833868854e-05 |
TBP#6908 | 6 | 3.70677068709639 | 0.00038541647290796 | 0.00378028841228723 |
TCF7L2#6934 | 5 | 8.97514713594779 | 3.818060286338e-05 | 0.000720033221821695 |
TFAP2C#7022 | 5 | 9.00769050821686 | 3.75071472654799e-05 | 0.000723934384265285 |
TRIM28#10155 | 6 | 18.5905250452625 | 2.41896703530258e-08 | 1.69553354496622e-06 |
USF1#7391 | 6 | 6.36149927720796 | 1.50818327938273e-05 | 0.000357010774060411 |
USF2#7392 | 5 | 10.8268311542247 | 1.51592052313491e-05 | 0.000358598467759201 |
YY1#7528 | 6 | 4.91117074985386 | 7.12445972864136e-05 | 0.00112414480978936 |
ZBTB33#10009 | 5 | 26.3872708583176 | 1.83222607625143e-07 | 1.00081516306288e-05 |
ZNF143#7702 | 6 | 13.5008765522279 | 1.64963374888971e-07 | 9.12532304556633e-06 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.