FFCP PHASE1:Hg19::chr17:70713965..70713974,-: Difference between revisions
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|id=chr17:70713965..70713974,-
|short_description=p@chr17:70713965..70713974,-
|description=CAGE_peak_at_chr17:70713965..70713974,-
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:70713965..70713974,- | |||
|coexpression_cluster_id=C3016 | |||
|description=CAGE_peak_at_chr17:70713965..70713974,- | |||
|id=chr17:70713965..70713974,- | |||
|ontology_enrichment_celltype=CL:0000066!7.23e-15!254;CL:1000497!2.83e-13!18;CL:0002518!2.83e-13!18;CL:0002541!5.33e-13!3;CL:0000159!5.31e-09!2;CL:1000449!1.43e-08!16;CL:1000507!2.81e-08!12;CL:1000494!2.81e-08!12;CL:0002681!1.47e-07!13;CL:0002584!1.47e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002541;3.80e-16;3!CL:1001319;2.62e-13;1!CL:1000600;2.62e-13;1!CL:0002379;9.73e-13;1!CL:1000415;3.59e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.52e-16,3;CL:1001319,2.62e-13,1;CL:1000600,2.62e-13,1;CL:0002379,1.09e-12,1;CL:0000066,1.63e-08,253;CL:1000415,3.48e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0001041;7.77e-10;30 | |||
|ontology_enrichment_disease=DOID:305!3.75e-20!106;DOID:0050687!1.38e-14!143;DOID:299!3.27e-12!25;DOID:1749!8.80e-10!14;DOID:162!1.58e-09!235;DOID:14566!3.48e-09!239;DOID:7!5.92e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:3111;1.82e-13;1!DOID:3603;1.82e-13;1!DOID:3620;9.73e-13;1!DOID:3565;9.73e-13;1!DOID:299;7.61e-12;25!DOID:1324;1.02e-07;15!DOID:4929;2.15e-07;2!DOID:3910;2.58e-07;2!DOID:0050615;2.88e-07;16!DOID:3493;3.28e-07;2!DOID:4468;4.04e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.59e-20,106;DOID:0050687,2.44e-14,143;DOID:3111,1.82e-13,1;DOID:3603,1.82e-13,1;DOID:3620,1.09e-12,1;DOID:3565,1.09e-12,1;DOID:299,7.44e-12,25;DOID:162,2.81e-09,235;DOID:14566,4.83e-09,239;DOID:1324,1.02e-07,15;DOID:7,2.06e-07,39;DOID:4929,2.15e-07,2;DOID:3910,2.58e-07,2;DOID:0050615,2.88e-07,16;DOID:3493,3.28e-07,2;DOID:4468,3.93e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000058!3.08e-14!26;UBERON:0000476!5.33e-13!3;UBERON:0000920!5.33e-13!3;UBERON:0002394!1.29e-10!4;UBERON:0003928!1.29e-10!4;UBERON:0002294!2.55e-10!7;UBERON:0001173!2.55e-10!7;UBERON:0004912!2.55e-10!7;UBERON:0005631!5.13e-10!14;UBERON:0000158!5.13e-10!14;UBERON:0003124!1.61e-09!7;UBERON:0000489!7.92e-09!32;UBERON:0004211!1.43e-08!16;UBERON:0001285!1.43e-08!16;UBERON:0007684!1.43e-08!16;UBERON:0003220!1.43e-08!16;UBERON:0004208!1.43e-08!16;UBERON:0002113!2.04e-08!27;UBERON:0003918!2.04e-08!27;UBERON:0005095!2.04e-08!27;UBERON:0007687!2.04e-08!27;UBERON:0000466!2.36e-08!126;UBERON:0009773!2.81e-08!12;UBERON:0001231!2.81e-08!12;UBERON:0004810!2.81e-08!12;UBERON:0006555!4.97e-08!17;UBERON:0005103!4.97e-08!17;UBERON:0000083!4.97e-08!17;UBERON:0009201!4.97e-08!17;UBERON:0004819!4.97e-08!17;UBERON:0006553!4.97e-08!17;UBERON:0003074!4.97e-08!17;UBERON:0003060!4.97e-08!17;UBERON:0001225!1.47e-07!13;UBERON:0008987!1.47e-07!13;UBERON:0000080!1.51e-07!18;UBERON:0002120!1.51e-07!18;UBERON:0004875!1.51e-07!18;UBERON:0005721!1.51e-07!18;UBERON:0005754!1.51e-07!18;UBERON:0007297!1.51e-07!18;UBERON:0006554!1.79e-07!44;UBERON:0001008!2.89e-07!45;UBERON:0005177!4.20e-07!107;UBERON:0004876!9.92e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002394;2.11e-27;4!UBERON:0003928;2.11e-27;4!UBERON:0002294;2.37e-27;7!UBERON:0001173;2.37e-27;7!UBERON:0000058;2.28e-19;10!UBERON:0003124;3.80e-16;3!UBERON:0000920;3.80e-16;3!UBERON:0004913;1.61e-13;1!UBERON:0003703;1.61e-13;1!UBERON:0001174;1.61e-13;1!UBERON:0004914;1.61e-13;1!UBERON:0004645;2.62e-13;1!UBERON:0001256;2.62e-13;1!UBERON:0001259;2.62e-13;1!UBERON:0002423;7.66e-08;25!UBERON:0004903;2.58e-07;2!UBERON:0002173;2.58e-07;2!UBERON:0002186;2.58e-07;2!UBERON:0001255;2.74e-07;2!UBERON:0001556;2.74e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002294,2.34e-21,9;UBERON:0001173,2.34e-21,9;UBERON:0004912,2.34e-21,9;UBERON:0002394,1.73e-18,6;UBERON:0003928,1.73e-18,6;UBERON:0000920,3.52e-16,3;UBERON:0004913,1.61e-13,1;UBERON:0003703,1.61e-13,1;UBERON:0001174,1.61e-13,1;UBERON:0004914,1.61e-13,1;UBERON:0004645,2.62e-13,1;UBERON:0001256,2.62e-13,1;UBERON:0001259,2.62e-13,1;UBERON:0005911,1.28e-10,82;UBERON:0000058,2.60e-10,19;UBERON:0001007,2.50e-08,145;UBERON:0001555,2.50e-08,145;UBERON:0007026,2.50e-08,145;UBERON:0007499,6.99e-08,25;UBERON:0009497,7.66e-08,25;UBERON:0000015,7.66e-08,25;UBERON:0002423,7.66e-08,25;UBERON:0006235,7.66e-08,25;UBERON:0004161,7.66e-08,25;UBERON:0009856,1.39e-07,26;UBERON:0003124,1.86e-07,7;UBERON:0004119,2.08e-07,160;UBERON:0000925,2.08e-07,160;UBERON:0006595,2.08e-07,160;UBERON:0004903,2.58e-07,2;UBERON:0002173,2.58e-07,2;UBERON:0002186,2.58e-07,2;UBERON:0001255,2.74e-07,2;UBERON:0001556,2.74e-07,2;UBERON:0004921,5.68e-07,118 | |||
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| ||
|short_description=p@chr17:70713965..70713974,- | |||
}} | }} |
Latest revision as of 20:34, 25 July 2015
Short description: | p@chr17:70713965..70713974, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:70713965..70713974, - |
Coexpression cluster: | C3016_papillotubular_mucinous_bile_signet_bronchioalveolar_tubular_clear |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.52e-16 | 3 |
bladder cell | 2.62e-13 | 1 |
lower urinary tract cell | 2.62e-13 | 1 |
meningothelial cell | 1.09e-12 | 1 |
epithelial cell | 1.63e-08 | 253 |
epithelial cell of gall bladder | 3.48e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
biliary system | 2.34e-21 | 9 |
biliary tree | 2.34e-21 | 9 |
biliary bud | 2.34e-21 | 9 |
bile duct | 1.73e-18 | 6 |
digestive system duct | 1.73e-18 | 6 |
egg chorion | 3.52e-16 | 3 |
hepatopancreatic ampulla | 1.61e-13 | 1 |
extrahepatic bile duct | 1.61e-13 | 1 |
common bile duct | 1.61e-13 | 1 |
duodenal papilla | 1.61e-13 | 1 |
urinary bladder urothelium | 2.62e-13 | 1 |
wall of urinary bladder | 2.62e-13 | 1 |
mucosa of urinary bladder | 2.62e-13 | 1 |
endo-epithelium | 1.28e-10 | 82 |
duct | 2.60e-10 | 19 |
digestive system | 2.50e-08 | 145 |
digestive tract | 2.50e-08 | 145 |
primitive gut | 2.50e-08 | 145 |
epithelial sac | 6.99e-08 | 25 |
epithelium of foregut-midgut junction | 7.66e-08 | 25 |
anatomical boundary | 7.66e-08 | 25 |
hepatobiliary system | 7.66e-08 | 25 |
foregut-midgut junction | 7.66e-08 | 25 |
septum transversum | 7.66e-08 | 25 |
sac | 1.39e-07 | 26 |
chorion | 1.86e-07 | 7 |
endoderm-derived structure | 2.08e-07 | 160 |
endoderm | 2.08e-07 | 160 |
presumptive endoderm | 2.08e-07 | 160 |
bronchoalveolar duct junction | 2.58e-07 | 2 |
alveolar duct | 2.58e-07 | 2 |
bronchiole | 2.58e-07 | 2 |
urinary bladder | 2.74e-07 | 2 |
lower urinary tract | 2.74e-07 | 2 |
subdivision of digestive tract | 5.68e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.59e-20 | 106 |
cell type cancer | 2.44e-14 | 143 |
cystadenocarcinoma | 1.82e-13 | 1 |
mucinous cystadenocarcinoma | 1.82e-13 | 1 |
central nervous system cancer | 1.09e-12 | 1 |
meningioma | 1.09e-12 | 1 |
adenocarcinoma | 7.44e-12 | 25 |
cancer | 2.81e-09 | 235 |
disease of cellular proliferation | 4.83e-09 | 239 |
lung cancer | 1.02e-07 | 15 |
disease of anatomical entity | 2.06e-07 | 39 |
tubular adenocarcinoma | 2.15e-07 | 2 |
lung adenocarcinoma | 2.58e-07 | 2 |
respiratory system cancer | 2.88e-07 | 16 |
signet ring cell adenocarcinoma | 3.28e-07 | 2 |
clear cell adenocarcinoma | 3.93e-07 | 2 |