FFCP PHASE1:Hg19::chr1:32716892..32716912,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3932 | |EntrezGene=3932 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6524 | |HGNC=6524 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000476457_5end | |association_with_transcript=0bp_to_ENST00000476457_5end | ||
|cluster_id=chr1:32716892..32716912,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_LCK_5end | |description=CAGE_peak_2_at_LCK_5end | ||
|id=chr1:32716892..32716912,+ | |id=chr1:32716892..32716912,+ | ||
|ontology_enrichment_celltype=CL:0000738!3.62e-33!140;CL:0000838!1.61e-30!52;CL:0002087!2.38e-30!119;CL:0000542!1.16e-29!53;CL:0000051!1.16e-29!53;CL:0002031!1.23e-26!124;CL:0000084!6.45e-26!25;CL:0000827!6.45e-26!25;CL:0000037!8.68e-26!172;CL:0000566!8.68e-26!172;CL:0002032!8.47e-24!165;CL:0000837!8.47e-24!165;CL:0000988!9.11e-24!182;CL:0000791!2.02e-23!18;CL:0000789!2.02e-23!18;CL:0002420!2.02e-23!18;CL:0002419!2.02e-23!18;CL:0000790!2.02e-23!18;CL:0000625!3.80e-15!11;CL:0000624!1.13e-08!6;CL:0000766!5.73e-07!76 | |ontology_enrichment_celltype=CL:0000738!3.62e-33!140;CL:0000838!1.61e-30!52;CL:0002087!2.38e-30!119;CL:0000542!1.16e-29!53;CL:0000051!1.16e-29!53;CL:0002031!1.23e-26!124;CL:0000084!6.45e-26!25;CL:0000827!6.45e-26!25;CL:0000037!8.68e-26!172;CL:0000566!8.68e-26!172;CL:0002032!8.47e-24!165;CL:0000837!8.47e-24!165;CL:0000988!9.11e-24!182;CL:0000791!2.02e-23!18;CL:0000789!2.02e-23!18;CL:0002420!2.02e-23!18;CL:0002419!2.02e-23!18;CL:0000790!2.02e-23!18;CL:0000625!3.80e-15!11;CL:0000624!1.13e-08!6;CL:0000766!5.73e-07!76 | ||
|ontology_enrichment_celltype_v019=CL:0000084;3.41e-42;25!CL:0000791;2.15e-37;18!CL:0000789;2.15e-37;18!CL:0002419;2.15e-37;18!CL:0000625;8.26e-24;11!CL:0000542;8.87e-20;53!CL:0000624;3.52e-13;6!CL:0002087;4.80e-10;104!CL:0000898;9.54e-08;3!CL:0000623;3.72e-07;3!CL:0000226;6.74e-07;3!CL:0000842;6.74e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.29e-42,25;CL:0000827,3.29e-42,25;CL:0000838,7.78e-39,52;CL:0000542,6.68e-38,53;CL:0000051,6.68e-38,53;CL:0000791,2.09e-37,18;CL:0000789,2.09e-37,18;CL:0002420,2.09e-37,18;CL:0002419,2.09e-37,18;CL:0000790,2.09e-37,18;CL:0000738,9.74e-27,136;CL:0002087,2.05e-25,115;CL:0000625,8.36e-24,11;CL:0002031,5.75e-20,120;CL:0000037,6.59e-20,168;CL:0000988,3.50e-18,177;CL:0002032,3.71e-17,161;CL:0000837,3.71e-17,161;CL:0000624,3.37e-13,6;CL:0000898,9.33e-08,3;CL:0000623,3.72e-07,3;CL:0000825,3.72e-07,3;CL:0000226,6.81e-07,3;CL:0000842,6.81e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.15e-37;18!CL:0000051;8.87e-20;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.55e-17!115;UBERON:0002390!1.18e-11!102;UBERON:0003061!1.18e-11!102;UBERON:0000178!4.18e-11!15;UBERON:0000179!4.18e-11!15;UBERON:0000463!4.18e-11!15;UBERON:0002193!5.80e-11!112;UBERON:0004177!6.95e-07!7 | |ontology_enrichment_uberon=UBERON:0007023!5.55e-17!115;UBERON:0002390!1.18e-11!102;UBERON:0003061!1.18e-11!102;UBERON:0000178!4.18e-11!15;UBERON:0000179!4.18e-11!15;UBERON:0000463!4.18e-11!15;UBERON:0002193!5.80e-11!112;UBERON:0004177!6.95e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.82e-18;15!UBERON:0000179;4.82e-18;15!UBERON:0000463;4.82e-18;15!UBERON:0002390;8.06e-12;32!UBERON:0002193;3.23e-08;42!UBERON:0004177;9.09e-07;5!UBERON:0005057;9.09e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.03e-18,15;UBERON:0000179,5.03e-18,15;UBERON:0000463,5.03e-18,15;UBERON:0004177,1.37e-10,7;UBERON:0005057,1.37e-10,7;UBERON:0002370,2.56e-09,4;UBERON:0005058,2.56e-09,4;UBERON:0009113,2.56e-09,4;UBERON:0003295,2.56e-09,4;UBERON:0005562,2.56e-09,4;UBERON:0002193,7.80e-08,108;UBERON:0002390,1.06e-07,98;UBERON:0003061,1.06e-07,98 | |||
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|short_description=p2@LCK | |short_description=p2@LCK | ||
}} | }} |
Latest revision as of 14:57, 17 September 2015
Short description: | p2@LCK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LCK_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000476457_5end |
EntrezGene: | LCK |
HGNC: | 6524 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.29e-42 | 25 |
pro-T cell | 3.29e-42 | 25 |
lymphoid lineage restricted progenitor cell | 7.78e-39 | 52 |
lymphocyte | 6.68e-38 | 53 |
common lymphoid progenitor | 6.68e-38 | 53 |
mature alpha-beta T cell | 2.09e-37 | 18 |
alpha-beta T cell | 2.09e-37 | 18 |
immature T cell | 2.09e-37 | 18 |
mature T cell | 2.09e-37 | 18 |
immature alpha-beta T cell | 2.09e-37 | 18 |
leukocyte | 9.74e-27 | 136 |
nongranular leukocyte | 2.05e-25 | 115 |
CD8-positive, alpha-beta T cell | 8.36e-24 | 11 |
hematopoietic lineage restricted progenitor cell | 5.75e-20 | 120 |
hematopoietic stem cell | 6.59e-20 | 168 |
hematopoietic cell | 3.50e-18 | 177 |
hematopoietic oligopotent progenitor cell | 3.71e-17 | 161 |
hematopoietic multipotent progenitor cell | 3.71e-17 | 161 |
CD4-positive, alpha-beta T cell | 3.37e-13 | 6 |
naive T cell | 9.33e-08 | 3 |
natural killer cell | 3.72e-07 | 3 |
pro-NK cell | 3.72e-07 | 3 |
single nucleate cell | 6.81e-07 | 3 |
mononuclear cell | 6.81e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.03e-18 | 15 |
haemolymphatic fluid | 5.03e-18 | 15 |
organism substance | 5.03e-18 | 15 |
hemopoietic organ | 1.37e-10 | 7 |
immune organ | 1.37e-10 | 7 |
thymus | 2.56e-09 | 4 |
hemolymphoid system gland | 2.56e-09 | 4 |
thymic region | 2.56e-09 | 4 |
pharyngeal gland | 2.56e-09 | 4 |
thymus primordium | 2.56e-09 | 4 |
hemolymphoid system | 7.80e-08 | 108 |
hematopoietic system | 1.06e-07 | 98 |
blood island | 1.06e-07 | 98 |