FFCP PHASE1:Hg19::chr1:246670539..246670611,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64754 | |EntrezGene=64754 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15513 | |HGNC=15513 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H7B4 | |UniProt=Q9H7B4 | ||
|association_with_transcript=0bp_to_ENST00000490107_5end | |association_with_transcript=0bp_to_ENST00000490107_5end | ||
|cluster_id=chr1:246670539..246670611,- | |||
|description=CAGE_peak_1_at_SMYD3_5end | |description=CAGE_peak_1_at_SMYD3_5end | ||
|id=chr1:246670539..246670611,- | |id=chr1:246670539..246670611,- | ||
|ontology_enrichment_celltype=CL:0000542!5.98e-09!53;CL:0000051!5.98e-09!53;CL:0000838!1.14e-08!52;CL:0000084!8.31e-07!25;CL:0000827!8.31e-07!25 | |ontology_enrichment_celltype=CL:0000542!5.98e-09!53;CL:0000051!5.98e-09!53;CL:0000838!1.14e-08!52;CL:0000084!8.31e-07!25;CL:0000827!8.31e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000084;8.52e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,5.98e-09,53;CL:0000051,5.98e-09,53;CL:0000838,1.14e-08,52;CL:0000084,8.31e-07,25;CL:0000827,8.31e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!5.91e-11!239;DOID:162!1.03e-10!235;DOID:0050686!2.33e-07!137 | |ontology_enrichment_disease=DOID:14566!5.91e-11!239;DOID:162!1.03e-10!235;DOID:0050686!2.33e-07!137 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,5.91e-11,239;DOID:162,1.03e-10,235;DOID:0050686,2.33e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000955!1.73e-14!69;UBERON:0006238!1.73e-14!69;UBERON:0000073!2.61e-14!94;UBERON:0001016!2.61e-14!94;UBERON:0005743!8.97e-13!86;UBERON:0001017!4.22e-12!82;UBERON:0002616!5.45e-12!59;UBERON:0001869!4.22e-11!32;UBERON:0001049!4.28e-11!57;UBERON:0005068!4.28e-11!57;UBERON:0006241!4.28e-11!57;UBERON:0007135!4.28e-11!57;UBERON:0001893!1.32e-10!34;UBERON:0002020!1.90e-10!34;UBERON:0003528!1.90e-10!34;UBERON:0002780!4.19e-10!41;UBERON:0001890!4.19e-10!41;UBERON:0006240!4.19e-10!41;UBERON:0002791!4.59e-10!33;UBERON:0002619!1.14e-09!22;UBERON:0003080!1.42e-09!42;UBERON:0001950!7.04e-09!20;UBERON:0000956!7.33e-09!25;UBERON:0000203!7.33e-09!25;UBERON:0000153!1.06e-08!129;UBERON:0007811!1.06e-08!129;UBERON:0002346!2.10e-08!90;UBERON:0003056!3.48e-08!61;UBERON:0000033!1.54e-07!123;UBERON:0003075!2.18e-07!86;UBERON:0007284!2.18e-07!86 | |ontology_enrichment_uberon=UBERON:0000955!1.73e-14!69;UBERON:0006238!1.73e-14!69;UBERON:0000073!2.61e-14!94;UBERON:0001016!2.61e-14!94;UBERON:0005743!8.97e-13!86;UBERON:0001017!4.22e-12!82;UBERON:0002616!5.45e-12!59;UBERON:0001869!4.22e-11!32;UBERON:0001049!4.28e-11!57;UBERON:0005068!4.28e-11!57;UBERON:0006241!4.28e-11!57;UBERON:0007135!4.28e-11!57;UBERON:0001893!1.32e-10!34;UBERON:0002020!1.90e-10!34;UBERON:0003528!1.90e-10!34;UBERON:0002780!4.19e-10!41;UBERON:0001890!4.19e-10!41;UBERON:0006240!4.19e-10!41;UBERON:0002791!4.59e-10!33;UBERON:0002619!1.14e-09!22;UBERON:0003080!1.42e-09!42;UBERON:0001950!7.04e-09!20;UBERON:0000956!7.33e-09!25;UBERON:0000203!7.33e-09!25;UBERON:0000153!1.06e-08!129;UBERON:0007811!1.06e-08!129;UBERON:0002346!2.10e-08!90;UBERON:0003056!3.48e-08!61;UBERON:0000033!1.54e-07!123;UBERON:0003075!2.18e-07!86;UBERON:0007284!2.18e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.38e-10;32!UBERON:0002619;8.93e-10;22!UBERON:0003528;1.18e-09;34!UBERON:0002020;1.18e-09;34!UBERON:0001893;1.33e-09;34!UBERON:0002791;2.03e-09;32!UBERON:0001950;5.32e-09;20!UBERON:0000956;5.88e-09;25!UBERON:0000203;5.88e-09;25!UBERON:0002780;9.18e-08;41!UBERON:0001890;9.18e-08;41!UBERON:0000955;1.58e-07;68!UBERON:0000073;3.05e-07;53!UBERON:0002616;3.05e-07;53!UBERON:0001017;3.28e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000955,5.32e-15,68;UBERON:0006238,5.32e-15,68;UBERON:0001016,4.95e-14,89;UBERON:0001017,1.67e-12,81;UBERON:0000073,1.35e-11,53;UBERON:0002616,1.35e-11,53;UBERON:0001049,1.41e-11,56;UBERON:0005068,1.41e-11,56;UBERON:0006241,1.41e-11,56;UBERON:0007135,1.41e-11,56;UBERON:0001869,4.22e-11,32;UBERON:0001893,1.32e-10,34;UBERON:0003528,1.90e-10,34;UBERON:0002020,1.90e-10,34;UBERON:0002791,3.98e-10,32;UBERON:0002780,4.19e-10,41;UBERON:0001890,4.19e-10,41;UBERON:0003080,4.19e-10,41;UBERON:0006240,4.19e-10,41;UBERON:0002619,1.14e-09,22;UBERON:0002346,1.48e-09,86;UBERON:0001950,7.04e-09,20;UBERON:0000956,7.33e-09,25;UBERON:0000203,7.33e-09,25;UBERON:0011216,9.18e-09,223;UBERON:0003075,1.81e-08,82;UBERON:0007284,1.81e-08,82;UBERON:0003056,2.03e-08,61 | |||
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| ||
|short_description=p1@SMYD3 | |short_description=p1@SMYD3 | ||
}} | }} |
Latest revision as of 22:46, 16 September 2015
Short description: | p1@SMYD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMYD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000490107_5end |
EntrezGene: | SMYD3 |
HGNC: | 15513 |
UniProt: | Q9H7B4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 5.98e-09 | 53 |
common lymphoid progenitor | 5.98e-09 | 53 |
lymphoid lineage restricted progenitor cell | 1.14e-08 | 52 |
T cell | 8.31e-07 | 25 |
pro-T cell | 8.31e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
brain | 5.32e-15 | 68 |
future brain | 5.32e-15 | 68 |
nervous system | 4.95e-14 | 89 |
central nervous system | 1.67e-12 | 81 |
regional part of nervous system | 1.35e-11 | 53 |
regional part of brain | 1.35e-11 | 53 |
neural tube | 1.41e-11 | 56 |
neural rod | 1.41e-11 | 56 |
future spinal cord | 1.41e-11 | 56 |
neural keel | 1.41e-11 | 56 |
cerebral hemisphere | 4.22e-11 | 32 |
telencephalon | 1.32e-10 | 34 |
brain grey matter | 1.90e-10 | 34 |
gray matter | 1.90e-10 | 34 |
regional part of telencephalon | 3.98e-10 | 32 |
regional part of forebrain | 4.19e-10 | 41 |
forebrain | 4.19e-10 | 41 |
anterior neural tube | 4.19e-10 | 41 |
future forebrain | 4.19e-10 | 41 |
regional part of cerebral cortex | 1.14e-09 | 22 |
neurectoderm | 1.48e-09 | 86 |
neocortex | 7.04e-09 | 20 |
cerebral cortex | 7.33e-09 | 25 |
pallium | 7.33e-09 | 25 |
organ system subdivision | 9.18e-09 | 223 |
neural plate | 1.81e-08 | 82 |
presumptive neural plate | 1.81e-08 | 82 |
pre-chordal neural plate | 2.03e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 5.91e-11 | 239 |
cancer | 1.03e-10 | 235 |
organ system cancer | 2.33e-07 | 137 |