FFCP PHASE1:Hg19::chr17:53535935..53535939,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:53535935..53535939,+ | |||
|coexpression_cluster_id=C920 | |||
|description=CAGE_peak_at_chr17:53535935..53535939,+ | |description=CAGE_peak_at_chr17:53535935..53535939,+ | ||
|id=chr17:53535935..53535939,+ | |id=chr17:53535935..53535939,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000054;1.07e-17;2!CL:0000137;1.07e-17;2!CL:0000092;1.07e-17;2!CL:0000322;2.31e-12;3!CL:0000083;1.57e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,1.07e-17,2;CL:0000137,1.07e-17,2;CL:0000092,1.07e-17,2;CL:0000322,2.31e-12,3;CL:0000083,1.70e-09,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060085!2.19e-08!1;DOID:3165!2.19e-08!1;DOID:0060121!2.19e-08!1;DOID:2438!2.19e-08!1;DOID:4418!2.19e-08!1;DOID:1799!2.35e-08!1;DOID:10165!2.35e-08!1;DOID:1798!2.35e-08!1;DOID:0060058!7.61e-07!10 | |ontology_enrichment_disease=DOID:0060085!2.19e-08!1;DOID:3165!2.19e-08!1;DOID:0060121!2.19e-08!1;DOID:2438!2.19e-08!1;DOID:4418!2.19e-08!1;DOID:1799!2.35e-08!1;DOID:10165!2.35e-08!1;DOID:1798!2.35e-08!1;DOID:0060058!7.61e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:0060085;7.06e-34;1!DOID:1799;7.06e-34;1!DOID:10165;7.06e-34;1!DOID:3165;7.06e-34;1!DOID:0060121;7.06e-34;1!DOID:2438;7.06e-34;1!DOID:4418;7.06e-34;1!DOID:1798;7.06e-34;1!DOID:3910;7.67e-18;2!DOID:200;1.07e-17;2!DOID:4305;1.07e-17;2!DOID:0060058;2.49e-14;10!DOID:0060072;1.57e-09;4!DOID:1793;1.57e-09;4!DOID:3908;6.13e-08;5!DOID:170;8.97e-07;6!DOID:201;8.97e-07;6!DOID:0060100;8.97e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,7.06e-34,1;DOID:3165,7.06e-34,1;DOID:0060121,7.06e-34,1;DOID:2438,7.06e-34,1;DOID:4418,7.06e-34,1;DOID:1799,9.85e-34,1;DOID:10165,9.85e-34,1;DOID:1798,9.85e-34,1;DOID:3910,7.67e-18,2;DOID:200,1.07e-17,2;DOID:4305,1.07e-17,2;DOID:0060058,2.49e-14,10;DOID:0060072,1.57e-09,4;DOID:1793,1.70e-09,4;DOID:3908,6.13e-08,5;DOID:201,8.97e-07,6;DOID:0060100,8.97e-07,6;DOID:170,9.49e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000029!2.90e-08!1;UBERON:0002038!6.63e-08!1;UBERON:0009661!6.63e-08!1;UBERON:0002902!1.14e-07!1;UBERON:0009899!1.14e-07!1;UBERON:0002022!1.21e-07!1 | |ontology_enrichment_uberon=UBERON:0000029!2.90e-08!1;UBERON:0002038!6.63e-08!1;UBERON:0009661!6.63e-08!1;UBERON:0002902!1.14e-07!1;UBERON:0009899!1.14e-07!1;UBERON:0002022!1.21e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;7.67e-18;2!UBERON:0002173;7.67e-18;2!UBERON:0002186;7.67e-18;2!UBERON:0004821;2.31e-12;3!UBERON:0007499;2.31e-12;3!UBERON:0003215;2.31e-12;3!UBERON:0010368;2.31e-12;3!UBERON:0009911;2.31e-12;3!UBERON:0002299;2.31e-12;3!UBERON:0006524;2.31e-12;3!UBERON:0008874;2.31e-12;3!UBERON:0002169;2.31e-12;3!UBERON:0004894;2.31e-12;3!UBERON:0009856;1.32e-09;4!UBERON:0000014;1.57e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,7.67e-18,2;UBERON:0002173,7.67e-18,2;UBERON:0002186,7.67e-18,2;UBERON:0004821,2.31e-12,3;UBERON:0003215,2.31e-12,3;UBERON:0010368,2.31e-12,3;UBERON:0009911,2.31e-12,3;UBERON:0002299,2.31e-12,3;UBERON:0006524,2.31e-12,3;UBERON:0008874,2.31e-12,3;UBERON:0002169,2.31e-12,3;UBERON:0004894,2.31e-12,3;UBERON:0000014,1.57e-09,4 | |||
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|short_description=p@chr17:53535935..53535939,+ | |short_description=p@chr17:53535935..53535939,+ | ||
}} | }} |
Latest revision as of 19:02, 25 July 2015
Short description: | p@chr17:53535935..53535939, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:53535935..53535939, + |
Coexpression cluster: | C920_anaplastic_adult_hereditary_cord_hairy_immature_xeroderma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 1.07e-17 | 2 |
osteocyte | 1.07e-17 | 2 |
osteoclast | 1.07e-17 | 2 |
pneumocyte | 2.31e-12 | 3 |
epithelial cell of pancreas | 1.70e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 7.67e-18 | 2 |
alveolar duct | 7.67e-18 | 2 |
bronchiole | 7.67e-18 | 2 |
pulmonary alveolus epithelium | 2.31e-12 | 3 |
alveolus | 2.31e-12 | 3 |
pulmonary lobule | 2.31e-12 | 3 |
lobule | 2.31e-12 | 3 |
alveolus of lung | 2.31e-12 | 3 |
alveolar system | 2.31e-12 | 3 |
pulmonary acinus | 2.31e-12 | 3 |
alveolar sac | 2.31e-12 | 3 |
alveolar wall | 2.31e-12 | 3 |
zone of skin | 1.57e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 7.06e-34 | 1 |
skin benign neoplasm | 7.06e-34 | 1 |
integumentary system benign neoplasm | 7.06e-34 | 1 |
dermis tumor | 7.06e-34 | 1 |
cutaneous fibrous histiocytoma | 7.06e-34 | 1 |
islet cell tumor | 9.85e-34 | 1 |
endocrine pancreas cancer | 9.85e-34 | 1 |
pancreatic endocrine carcinoma | 9.85e-34 | 1 |
lung adenocarcinoma | 7.67e-18 | 2 |
giant cell tumor | 1.07e-17 | 2 |
bone giant cell tumor | 1.07e-17 | 2 |
lymphoma | 2.49e-14 | 10 |
benign neoplasm | 1.57e-09 | 4 |
pancreatic cancer | 1.70e-09 | 4 |
non-small cell lung carcinoma | 6.13e-08 | 5 |
connective tissue cancer | 8.97e-07 | 6 |
musculoskeletal system cancer | 8.97e-07 | 6 |
endocrine gland cancer | 9.49e-07 | 6 |