FFCP PHASE1:Hg19::chr17:46806067..46806097,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:46806067..46806097,-
|short_description=p1@HOXB13
|description=CAGE_peak_1_at_HOXB13_5end
|association_with_transcript=13bp_to_NM_006361,uc002ioa.2_5end
...") |
No edit summary |
||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10481 | |EntrezGene=10481 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5112 | |HGNC=5112 | ||
|TSSclassifier=strong | |||
|UniProt=Q4KR72,Q92826 | |UniProt=Q4KR72,Q92826 | ||
|association_with_transcript=13bp_to_NM_006361,uc002ioa.2_5end | |||
|cluster_id=chr17:46806067..46806097,- | |||
|coexpression_cluster_id=C2415 | |||
|description=CAGE_peak_1_at_HOXB13_5end | |||
|id=chr17:46806067..46806097,- | |||
|ontology_enrichment_celltype=CL:0000066!3.75e-16!254 | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.57e-08;10!CL:0000244;4.96e-08;4!CL:0000731;4.96e-08;4!CL:0002567;4.46e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.21e-15,253;CL:0000148,1.41e-08,10;CL:0000541,1.41e-08,10;CL:0000244,6.04e-08,4;CL:0000731,6.04e-08,4;CL:0002567,4.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.62e-09;29 | |||
|ontology_enrichment_disease=DOID:0050687!8.44e-47!143;DOID:14566!6.93e-46!239;DOID:162!2.56e-45!235;DOID:305!1.60e-28!106;DOID:1115!3.91e-12!20;DOID:299!2.99e-11!25;DOID:0050686!3.00e-11!137;DOID:3095!1.38e-07!22;DOID:2994!1.38e-07!22;DOID:3119!9.00e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1115;4.84e-10;20!DOID:3095;6.73e-09;22!DOID:2994;6.73e-09;22!DOID:0050687;1.07e-08;143!DOID:171;1.24e-08;10!DOID:299;1.99e-08;25!DOID:3119;2.30e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.97e-36,143;DOID:14566,5.86e-33,239;DOID:162,6.81e-32,235;DOID:305,1.45e-19,106;DOID:1115,4.28e-10,20;DOID:3095,7.45e-09,22;DOID:2994,7.45e-09,22;DOID:0050686,8.28e-09,137;DOID:171,1.30e-08,10;DOID:299,1.71e-08,25;DOID:3119,1.88e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.56e-10!9;UBERON:0004921!3.50e-09!129;UBERON:0004185!3.50e-09!129;UBERON:0001046!6.68e-09!19;UBERON:0005409!1.80e-08!35;UBERON:0000160!1.20e-07!27;UBERON:0005910!1.58e-07!6;UBERON:0000077!1.73e-07!130;UBERON:0004119!1.90e-07!169;UBERON:0000925!1.90e-07!169;UBERON:0006595!1.90e-07!169;UBERON:0000365!7.24e-07!5;UBERON:0005156!9.08e-07!59;UBERON:0000990!9.08e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.61e-14;9!UBERON:0001557;1.61e-14;9!UBERON:0005910;1.99e-10;6!UBERON:0000365;2.07e-09;5!UBERON:0002346;3.17e-08;4!UBERON:0000923;3.17e-08;4!UBERON:0010316;3.17e-08;4!UBERON:0005291;3.17e-08;4!UBERON:0001264;3.91e-07;10!UBERON:0002075;4.53e-07;18!UBERON:0001052;5.15e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.78e-14,9;UBERON:0001046,1.50e-10,19;UBERON:0005910,2.29e-10,6;UBERON:0000365,2.13e-09,5;UBERON:0004921,1.23e-07,118;UBERON:0001264,3.61e-07,10;UBERON:0002075,3.94e-07,18;UBERON:0001052,4.50e-07,4;UBERON:0004119,6.11e-07,160;UBERON:0000925,6.11e-07,160;UBERON:0006595,6.11e-07,160;UBERON:0000162,8.58e-07,14;UBERON:0001353,8.58e-07,14;UBERON:0000163,8.58e-07,14;UBERON:0006866,8.58e-07,14;UBERON:0000164,8.58e-07,14;UBERON:0000931,8.58e-07,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352303495931295,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06112432036503,3.35010341396862,0,0.194874010322397,0,0.0920498986422993,0,0,0,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02243120135469,5.22612539242115,3.13314338848527,2.97793726377464,4.13970943775572,4.74541238222193,3.10112008768378,3.92442930250692,3.07797725557112,0,0,0,0,0,0,0,0,4.5505722260952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,2.09543051164158,15.6615254478894,16.4104426094066,13.6857956818164,1.85089486865982,13.2150945451324,11.7188837378537,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0,0,0,0,0,0,0.116210378459959,2.05461064305758,6.41620704970512,5.61694032508968,0.114814448164607,0,1.44236856455367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,1.55668090191184,2.55779449753823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0,0,0,0,0,0,0,0,5.16606447205476,5.05414427002877,7.53831261012349,4.13502120372527,0,0,0,0,0,0,0,0,6.94356462328575,0,3.18552280775341,0,0,0,1.75368900001705,0,0,0,0,0,0,0,2.50634477090067,0,0.321176150207399,0,0.425846237690326,0,1.22896305723383,1.78940886313933,0.834245708559542,0,0,0,0,0,0,4.30423242938906,0.146508179271894,3.39809460898638,0.111443384277478,2.27308917445131,0,0.296964680832639,0,0,0,0,0,0.211125408127993,0,0,9.06957892275394,0.306806047506464,0,0,0,0.179021174675609,0,1.57829449019094,0,0,0,0,0,0,0,0,0.796554137998498,0,4.49136595359079,0,11.9557891487134,1.56262495439963,0,0,0,0,0,0,4.13966161372163,1.53366118706464,1.07730361905316,0,3.4584585658209,0.987334088507493,5.4323685961004,0,0,0,0,0,0,0,0,0,0,0,0,6.03961390188847,2.54435528581093,9.08832286916783,5.97157158647103,0.796118080530053,1.83309043480088,1.18608451472249,0.494255755786011,0.835375596043643,0,0,0,0,1.9566461893209,1.45668227720456,0,0,0,0,2.1045278718029,3.7327748903009,6.64653872707185,7.28182302926097,2.82539626566503,1.19472429772959,0.284609546029793,1.66409607615766,1.38847790668105,0.685946781900644,0,0,0,0.967563312890852,0.511625219603299,0.985385484638511,0,8.20781978230952,0,0.137041924646751,2.38457534043588,0,3.32437350649165,0,0,3.59657297247834,3.45817001169854,0.343609788497747,0,0.288109595976299,0,0.707082103850386,1.08723364858891,1.569042694685,2.54995544090804,0,0,0,0,0,1.31443677139657,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,1.96854963029498,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.422401346077626,1.07572403599707,0.959575986597226,0,0,0,0,0,0,13.1703210718736,0.328370082997356,3.06698439213759,6.57210130816729,0,0,0,0,2.05304205461195,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0.249960815924213,2.88133323329131,5.13837600380941,1.17632909849086,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0.963099152036517,2.57329909649911,0.521988583930423,1.58694147858591,6.48262928106735,1.71315693154527,0.358177682162975,1.23520578864389,1.75427239662966,4.59391779459291,0,0.168942440653073,0.256241518587947,0,4.86175929883811,0,0,0,0,4.25892803500336,0.737318726261158,0.633936370075881,0.19998739585493,0,0,1.70254786070051,4.60264875629602,0,0,0,0,5.50430796495637,0,5.43144095852881,9.56587140457573,6.81646703424512,13.4074780313579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35939446695481,0,0,0,0.690359926060101,2.18807844327902,0,0.60511520611056,0,0,0,1.77427303460454,0,0,0,0,0,0,0.992422356778588,5.80375106386748,0.383287282918786,0,0,0,0,0.532214220975833,0,0,0,0,0,31.8121809411318,14.9136876415977,0,3.08299379645168,1.82631744101899,0,0.47775168788705,0,0.316027223465453,2.44106993273063,9.90992152124703,0,0,0,0,0.430227358820278,3.19496401972526,3.66417640464378,0,0.22910686854405,3.41227024230752,0.955538938977433,2.46081949955143,3.63155864376399,0.487671699929078,0,0,0,0,0.467878926924211,2.38740930193642,9.87036753453819,0.5647304101948,0,1.66059127923341,0,0,0,0,3.06379511232114,0,0,0.4226557275834,0.169927114687817,0,0,0,3.57107877211315,0,0,0,0,0,8.36189279623878,0,0,0,0,0,0,0,0,0.886889507080059,1.42784361638774,1.60330443159336,1.19463369395298,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215166616178029,0,3.74455035610483,1.3874554964103,0,3.23370727583713,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352303495931295,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06112432036503,3.35010341396862,0,0.194874010322397,0,0.0920498986422993,0,0,0,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02243120135469,5.22612539242115,3.13314338848527,2.97793726377464,4.13970943775572,4.74541238222193,3.10112008768378,3.92442930250692,3.07797725557112,0,0,0,0,0,0,0,0,4.5505722260952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,2.09543051164158,15.6615254478894,16.4104426094066,13.6857956818164,1.85089486865982,13.2150945451324,11.7188837378537,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0,0,0,0,0,0,0.116210378459959,2.05461064305758,6.41620704970512,5.61694032508968,0.114814448164607,0,1.44236856455367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,1.55668090191184,2.55779449753823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0,0,0,0,0,0,0,0,5.16606447205476,5.05414427002877,7.53831261012349,4.13502120372527,0,0,0,0,0,0,0,0,6.94356462328575,0,3.18552280775341,0,0,0,1.75368900001705,0,0,0,0,0,0,0,2.50634477090067,0,0.321176150207399,0,0.425846237690326,0,1.22896305723383,1.78940886313933,0.834245708559542,0,0,0,0,0,0,4.30423242938906,0.146508179271894,3.39809460898638,0.111443384277478,2.27308917445131,0,0.296964680832639,0,0,0,0,0,0.211125408127993,0,0,9.06957892275394,0.306806047506464,0,0,0,0.179021174675609,0,1.57829449019094,0,0,0,0,0,0,0,0,0.796554137998498,0,4.49136595359079,0,11.9557891487134,1.56262495439963,0,0,0,0,0,0,4.13966161372163,1.53366118706464,1.07730361905316,0,3.4584585658209,0.987334088507493,5.4323685961004,0,0,0,0,0,0,0,0,0,0,0,0,6.03961390188847,2.54435528581093,9.08832286916783,5.97157158647103,0.796118080530053,1.83309043480088,1.18608451472249,0.494255755786011,0.835375596043643,0,0,0,0,1.9566461893209,1.45668227720456,0,0,0,0,2.1045278718029,3.7327748903009,6.64653872707185,7.28182302926097,2.82539626566503,1.19472429772959,0.284609546029793,1.66409607615766,1.38847790668105,0.685946781900644,0,0,0,0.967563312890852,0.511625219603299,0.985385484638511,0,8.20781978230952,0,0.137041924646751,2.38457534043588,0,3.32437350649165,0,0,3.59657297247834,3.45817001169854,0.343609788497747,0,0.288109595976299,0,0.707082103850386,1.08723364858891,1.569042694685,2.54995544090804,0,0,0,0,0,1.31443677139657,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,1.96854963029498,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.422401346077626,1.07572403599707,0.959575986597226,0,0,0,0,0,0,13.1703210718736,0.328370082997356,3.06698439213759,6.57210130816729,0,0,0,0,2.05304205461195,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0.249960815924213,2.88133323329131,5.13837600380941,1.17632909849086,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0.963099152036517,2.57329909649911,0.521988583930423,1.58694147858591,6.48262928106735,1.71315693154527,0.358177682162975,1.23520578864389,1.75427239662966,4.59391779459291,0,0.168942440653073,0.256241518587947,0,4.86175929883811,0,0,0,0,4.25892803500336,0.737318726261158,0.633936370075881,0.19998739585493,0,0,1.70254786070051,4.60264875629602,0,0,0,0,5.50430796495637,0,5.43144095852881,9.56587140457573,6.81646703424512,13.4074780313579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35939446695481,0,0,0,0.690359926060101,2.18807844327902,0,0.60511520611056,0,0,0,1.77427303460454,0,0,0,0,0,0,0.992422356778588,5.80375106386748,0.383287282918786,0,0,0,0,0.532214220975833,0,0,0,0,0,31.8121809411318,14.9136876415977,0,3.08299379645168,1.82631744101899,0,0.47775168788705,0,0.316027223465453,2.44106993273063,9.90992152124703,0,0,0,0,0.430227358820278,3.19496401972526,3.66417640464378,0,0.22910686854405,3.41227024230752,0.955538938977433,2.46081949955143,3.63155864376399,0.487671699929078,0,0,0,0,0.467878926924211,2.38740930193642,9.87036753453819,0.5647304101948,0,1.66059127923341,0,0,0,0,3.06379511232114,0,0,0.4226557275834,0.169927114687817,0,0,0,3.57107877211315,0,0,0,0,0,8.36189279623878,0,0,0,0,0,0,0,0,0.886889507080059,1.42784361638774,1.60330443159336,1.19463369395298,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215166616178029,0,3.74455035610483,1.3874554964103,0,3.23370727583713,0,0,0.406896178315738,0,0,0 | ||
|short_description=p1@HOXB13 | |||
}} | }} |
Latest revision as of 17:37, 15 September 2015
Short description: | p1@HOXB13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXB13_5end |
Coexpression cluster: | C2415_prostate_neuroepithelioma_neuroectodermal_rhabdomyosarcoma_Melanocyte_carcinoid_argyrophil |
Association with transcript: | 13bp_to_NM_006361, uc002ioa.2_5end |
EntrezGene: | HOXB13 |
HGNC: | 5112 |
UniProt: | Q4KR72Q92826 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.21e-15 | 253 |
melanocyte | 1.41e-08 | 10 |
melanoblast | 1.41e-08 | 10 |
transitional epithelial cell | 6.04e-08 | 4 |
urothelial cell | 6.04e-08 | 4 |
light melanocyte | 4.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.78e-14 | 9 |
hindgut | 1.50e-10 | 19 |
transitional epithelium | 2.29e-10 | 6 |
urothelium | 2.13e-09 | 5 |
subdivision of digestive tract | 1.23e-07 | 118 |
pancreas | 3.61e-07 | 10 |
viscus | 3.94e-07 | 18 |
rectum | 4.50e-07 | 4 |
endoderm-derived structure | 6.11e-07 | 160 |
endoderm | 6.11e-07 | 160 |
presumptive endoderm | 6.11e-07 | 160 |
cloaca | 8.58e-07 | 14 |
anal region | 8.58e-07 | 14 |
embryonic cloaca | 8.58e-07 | 14 |
terminal part of digestive tract | 8.58e-07 | 14 |
primitive urogenital sinus | 8.58e-07 | 14 |
proctodeum | 8.58e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.97e-36 | 143 |
disease of cellular proliferation | 5.86e-33 | 239 |
cancer | 6.81e-32 | 235 |
carcinoma | 1.45e-19 | 106 |
sarcoma | 4.28e-10 | 20 |
germ cell and embryonal cancer | 7.45e-09 | 22 |
germ cell cancer | 7.45e-09 | 22 |
organ system cancer | 8.28e-09 | 137 |
neuroectodermal tumor | 1.30e-08 | 10 |
adenocarcinoma | 1.71e-08 | 25 |
gastrointestinal system cancer | 1.88e-08 | 14 |