FFCP PHASE1:Hg19::chr14:106331652..106331680,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=5532 | |HGNC=5532 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390565_5end | |association_with_transcript=0bp_to_ENST00000390565_5end | ||
|cluster_id=chr14:106331652..106331680,- | |||
|coexpression_cluster_id=C904 | |||
|description=CAGE_peak_1_at_IGHJ1_5end | |description=CAGE_peak_1_at_IGHJ1_5end | ||
|id=chr14:106331652..106331680,- | |id=chr14:106331652..106331680,- | ||
|ontology_enrichment_celltype=CL:0000236!2.98e-23!14;CL:0000945!6.89e-15!24;CL:0000826!6.89e-15!24;CL:0000037!2.02e-13!172;CL:0000566!2.02e-13!172;CL:0000988!3.66e-12!182;CL:0000838!3.05e-11!52;CL:0000542!5.96e-11!53;CL:0000051!5.96e-11!53;CL:0000784!9.47e-10!3;CL:0002032!6.71e-09!165;CL:0000837!6.71e-09!165;CL:0000842!2.09e-08!3;CL:0002087!9.24e-08!119;CL:0000738!3.17e-07!140 | |ontology_enrichment_celltype=CL:0000236!2.98e-23!14;CL:0000945!6.89e-15!24;CL:0000826!6.89e-15!24;CL:0000037!2.02e-13!172;CL:0000566!2.02e-13!172;CL:0000988!3.66e-12!182;CL:0000838!3.05e-11!52;CL:0000542!5.96e-11!53;CL:0000051!5.96e-11!53;CL:0000784!9.47e-10!3;CL:0002032!6.71e-09!165;CL:0000837!6.71e-09!165;CL:0000842!2.09e-08!3;CL:0002087!9.24e-08!119;CL:0000738!3.17e-07!140 | ||
|ontology_enrichment_celltype_v019=CL:0000236;5.68e-42;13!CL:0000945;1.70e-26;24!CL:0000784;3.99e-18;3!CL:0000542;1.31e-08;53!CL:0000037;1.86e-07;1!CL:0001024;1.86e-07;1!CL:0002032;4.43e-07;1!CL:0000557;4.43e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,7.34e-39,14;CL:0000945,1.86e-26,24;CL:0000826,1.86e-26,24;CL:0000784,4.23e-18,3;CL:0000037,3.48e-13,168;CL:0000988,2.83e-12,177;CL:0000838,4.10e-11,52;CL:0000542,7.24e-11,53;CL:0000051,7.24e-11,53;CL:0002032,6.35e-10,161;CL:0000837,6.35e-10,161;CL:0001024,1.86e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;1.31e-08;53!UBERON:0001045;4.43e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:8692;4.32e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.97e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0004177!5.64e-10!7 | |ontology_enrichment_uberon=UBERON:0004177!5.64e-10!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0004177;8.78e-11;5!UBERON:0005057;8.78e-11;5!UBERON:0002106;1.21e-08;3!UBERON:0002405;4.32e-07;27!UBERON:0001154;4.43e-07;1!UBERON:0001153;4.43e-07;1!UBERON:0009854;4.43e-07;1!UBERON:0002372;8.67e-07;1!UBERON:0001961;8.67e-07;1!UBERON:0001744;8.67e-07;1!UBERON:0001042;8.67e-07;1!UBERON:0001735;8.67e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.34e-08,3;UBERON:0004854,1.34e-08,3;UBERON:0009034,1.34e-08,3;UBERON:0002095,1.34e-08,3;UBERON:0004782,1.34e-08,3;UBERON:0003281,1.34e-08,3;UBERON:0009664,1.34e-08,3;UBERON:0002296,1.34e-08,3;UBERON:0005602,1.34e-08,3;UBERON:0001179,1.34e-08,3;UBERON:0006293,1.34e-08,3;UBERON:0004177,8.87e-08,7;UBERON:0005057,8.87e-08,7;UBERON:0001154,4.06e-07,1;UBERON:0001153,4.06e-07,1;UBERON:0001045,4.06e-07,1;UBERON:0002372,7.29e-07,1;UBERON:0001961,7.29e-07,1;UBERON:0001744,7.29e-07,1;UBERON:0001735,7.29e-07,1 | |||
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| ||
|short_description=p1@IGHJ1 | |short_description=p1@IGHJ1 | ||
}} | }} |
Latest revision as of 21:22, 18 September 2015
Short description: | p1@IGHJ1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IGHJ1_5end |
Coexpression cluster: | C904_acute_CD133_CD34_Dendritic_carcinoid_granulocyte_spleen |
Association with transcript: | 0bp_to_ENST00000390565_5end |
EntrezGene: | NA |
HGNC: | 5532 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 7.34e-39 | 14 |
lymphocyte of B lineage | 1.86e-26 | 24 |
pro-B cell | 1.86e-26 | 24 |
plasmacytoid dendritic cell | 4.23e-18 | 3 |
hematopoietic stem cell | 3.48e-13 | 168 |
hematopoietic cell | 2.83e-12 | 177 |
lymphoid lineage restricted progenitor cell | 4.10e-11 | 52 |
lymphocyte | 7.24e-11 | 53 |
common lymphoid progenitor | 7.24e-11 | 53 |
hematopoietic oligopotent progenitor cell | 6.35e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.35e-10 | 161 |
CD34-positive, CD38-negative hematopoietic stem cell | 1.86e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.34e-08 | 3 |
gastrointestinal system mesentery | 1.34e-08 | 3 |
stomach region | 1.34e-08 | 3 |
mesentery | 1.34e-08 | 3 |
gastrointestinal system serosa | 1.34e-08 | 3 |
mesentery of stomach | 1.34e-08 | 3 |
gut mesentery | 1.34e-08 | 3 |
dorsal mesentery | 1.34e-08 | 3 |
dorsal mesogastrium | 1.34e-08 | 3 |
peritoneal cavity | 1.34e-08 | 3 |
spleen primordium | 1.34e-08 | 3 |
hemopoietic organ | 8.87e-08 | 7 |
immune organ | 8.87e-08 | 7 |
vermiform appendix | 4.06e-07 | 1 |
caecum | 4.06e-07 | 1 |
midgut | 4.06e-07 | 1 |
tonsil | 7.29e-07 | 1 |
mucosa-associated lymphoid tissue | 7.29e-07 | 1 |
lymphoid tissue | 7.29e-07 | 1 |
tonsillar ring | 7.29e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.97e-08 | 31 |