FFCP PHASE1:Hg19::chr1:27992577..27992588,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:27992577..27992588,+ | |||
|coexpression_cluster_id=C1244 | |||
|description=CAGE_peak_at_chr1:27992577..27992588,+ | |description=CAGE_peak_at_chr1:27992577..27992588,+ | ||
|id=chr1:27992577..27992588,+ | |id=chr1:27992577..27992588,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002379;6.21e-15;1!CL:0002591;1.50e-14;1!CL:0002595;6.69e-12;5!CL:0002593;3.56e-08;2!CL:1000415;6.35e-08;2!CL:0000359;3.94e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002379,6.22e-15,1;CL:0002591,2.75e-14,1;CL:0002595,6.70e-12,5;CL:0002593,3.56e-08,2;CL:1000415,5.74e-08,2;CL:0000359,5.67e-07,32 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.50e-14;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3620;6.21e-15;1!DOID:3565;6.21e-15;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,6.22e-15,1;DOID:3565,6.22e-15,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.50e-14;1!UBERON:0001785;1.50e-14;1!UBERON:0002464;1.50e-14;1!UBERON:0004904;1.50e-14;1!UBERON:0001021;1.50e-14;1!UBERON:0003834;6.69e-12;5!UBERON:0001533;6.69e-12;5!UBERON:0003513;9.33e-09;7!UBERON:0002456;3.56e-08;2!UBERON:0003714;6.35e-08;2!UBERON:0005162;6.35e-08;2!UBERON:0000122;6.35e-08;2!UBERON:0000078;6.35e-08;2!UBERON:0002012;6.35e-08;2!UBERON:0008886;6.35e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.07e-14,1;UBERON:0001785,1.07e-14,1;UBERON:0002464,1.07e-14,1;UBERON:0004904,1.07e-14,1;UBERON:0001021,1.07e-14,1;UBERON:0003902,1.07e-14,1;UBERON:0005425,1.07e-14,1;UBERON:0003834,6.70e-12,5;UBERON:0001533,6.70e-12,5;UBERON:0003513,9.33e-09,7;UBERON:0002456,3.56e-08,2;UBERON:0003714,5.37e-08,2;UBERON:0005162,5.37e-08,2;UBERON:0000122,5.37e-08,2;UBERON:0000078,8.60e-08,2;UBERON:0007497,8.60e-08,2;UBERON:0003643,8.60e-08,2;UBERON:0003504,8.60e-08,2;UBERON:0003469,8.60e-08,2;UBERON:0003496,8.60e-08,2;UBERON:0002012,8.60e-08,2;UBERON:0008886,8.60e-08,2;UBERON:0007303,8.60e-08,2;UBERON:0002061,8.60e-08,2;UBERON:0005432,8.60e-08,2;UBERON:0004363,8.60e-08,2;UBERON:0000486,2.72e-07,83;UBERON:0004923,6.77e-07,66 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.575384784644301,0,0.47296445977717,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0.426224750532694,0.580418477257168,0,0,0.251248665256743,0,0.217188844705117,1.21079900526674,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0.371457501329565,0,0,0.347140501607594,0,0,0,0,0.258416759169329,0,0,0.805658634218294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,1.18800285728205,0.741800787835671,0,0,0,0,0,0,0.30648779579902,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0.984868024349589,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01346914667305,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0.271265023699736,0,0,0.157702415033935,0,0,0,0,0,0,0,0.195801157462741,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0,0.519254429183621,0.581051892299796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307007349452259,0,0,0,0,0,0,0,0,0,0,0,0,1.84820148105653,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0.359744915166629,0,0,0,0,0.421258456238981,0,6.82397770967596,0,0,0,1.13008116620243,0,0,5.26141062304515,0,0,0,0,0,0,0,0,0,1.26664581178598,0.329294892959902,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0.71623345421307,1.18785872333055,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,1.5950057986596,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,1.36885967914362,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0.229160424011684,0,0,0.858452096273142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11739237728355,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0.155262956876259,0.414706207840855,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.857766365499703,0,0,0,0,0,0,0,0,0,0,0,0,0.607719912354764,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0.344429959321631,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0.918736432059601,0,0,0,0,0,0,0,1.42769420259154,0,0,0.366857197043358,0,0,0,0,0,0,0,0.785720083444267,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0.535701835878287,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365753774946808,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0.202117188958219,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 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| ||
|short_description=p@chr1:27992577..27992588,+ | |short_description=p@chr1:27992577..27992588,+ | ||
}} | }} |
Latest revision as of 06:51, 28 July 2015
Short description: | p@chr1:27992577..27992588, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:27992577..27992588, + |
Coexpression cluster: | C1244_Smooth_mesenchymal_Fibroblast_mesothelioma_gall_Melanocyte_meningioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meningothelial cell | 6.22e-15 | 1 |
smooth muscle cell of the pulmonary artery | 2.75e-14 | 1 |
smooth muscle cell of the subclavian artery | 6.70e-12 | 5 |
smooth muscle cell of the internal thoracic artery | 3.56e-08 | 2 |
epithelial cell of gall bladder | 5.74e-08 | 2 |
vascular associated smooth muscle cell | 5.67e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.07e-14 | 1 |
cranial nerve | 1.07e-14 | 1 |
nerve trunk | 1.07e-14 | 1 |
nerve connecting eye with brain | 1.07e-14 | 1 |
nerve | 1.07e-14 | 1 |
retinal neural layer | 1.07e-14 | 1 |
presumptive neural retina | 1.07e-14 | 1 |
thoracic segment blood vessel | 6.70e-12 | 5 |
subclavian artery | 6.70e-12 | 5 |
trunk blood vessel | 9.33e-09 | 7 |
internal thoracic artery | 3.56e-08 | 2 |
neural tissue | 5.37e-08 | 2 |
multi cell component structure | 5.37e-08 | 2 |
neuron projection bundle | 5.37e-08 | 2 |
mixed ectoderm/mesoderm/endoderm-derived structure | 8.60e-08 | 2 |
developing epithelial placode | 8.60e-08 | 2 |
respiratory system arterial blood vessel | 8.60e-08 | 2 |
respiratory system blood vessel | 8.60e-08 | 2 |
respiratory system artery | 8.60e-08 | 2 |
head blood vessel | 8.60e-08 | 2 |
pulmonary artery | 8.60e-08 | 2 |
pulmonary vascular system | 8.60e-08 | 2 |
pharyngeal vasculature | 8.60e-08 | 2 |
truncus arteriosus | 8.60e-08 | 2 |
aortic sac | 8.60e-08 | 2 |
pharyngeal arch artery | 8.60e-08 | 2 |
multilaminar epithelium | 2.72e-07 | 83 |
organ component layer | 6.77e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 6.22e-15 | 1 |
meningioma | 6.22e-15 | 1 |