FFCP PHASE1:Hg19::chr1:153744081..153744096,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:153744081..153744096,+ | |||
|coexpression_cluster_id=C54 | |||
|description=CAGE_peak_at_chr1:153744081..153744096,+ | |description=CAGE_peak_at_chr1:153744081..153744096,+ | ||
|id=chr1:153744081..153744096,+ | |id=chr1:153744081..153744096,+ | ||
|ontology_enrichment_celltype=CL:0002551!4.27e-14!6;CL:0000990!2.34e-09!8;CL:0002367!5.82e-08!2;CL:0002363!9.90e-08!2;CL:0000008!9.90e-08!2;CL:0002545!1.09e-07!2;CL:0000451!1.41e-07!10 | |ontology_enrichment_celltype=CL:0002551!4.27e-14!6;CL:0000990!2.34e-09!8;CL:0002367!5.82e-08!2;CL:0002363!9.90e-08!2;CL:0000008!9.90e-08!2;CL:0002545!1.09e-07!2;CL:0000451!1.41e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0002367;4.55e-29;2!CL:0000840;2.63e-22;5!CL:0002551;3.51e-22;6!CL:0000990;4.26e-15;8!CL:0000451;1.82e-12;10!CL:0002262;1.86e-08;2!CL:1000398;1.86e-08;2!CL:0002363;1.86e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002367,6.99e-29,2;CL:0000840,2.28e-22,5;CL:0001029,2.28e-22,5;CL:0002551,3.27e-22,6;CL:0000990,3.87e-15,8;CL:0000451,1.69e-12,10;CL:0002262,1.86e-08,2;CL:1000398,1.86e-08,2;CL:0002363,2.15e-08,2;CL:0000008,2.15e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000008;1.86e-08;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!8.20e-13!20;UBERON:0002619!1.60e-11!22;UBERON:0001869!8.08e-11!32;UBERON:0003056!1.49e-10!61;UBERON:0001893!4.70e-10!34;UBERON:0000956!5.78e-10!25;UBERON:0000203!5.78e-10!25;UBERON:0000119!1.31e-09!312;UBERON:0002067!2.93e-09!9;UBERON:0004016!2.93e-09!9;UBERON:0010083!2.93e-09!9;UBERON:0003080!2.99e-09!42;UBERON:0000483!3.92e-09!309;UBERON:0002791!1.00e-08!33;UBERON:0002020!2.06e-08!34;UBERON:0003528!2.06e-08!34;UBERON:0003075!2.26e-08!86;UBERON:0007284!2.26e-08!86;UBERON:0000200!3.41e-08!6;UBERON:0005969!5.82e-08!2;UBERON:0003956!5.82e-08!2;UBERON:0002780!5.83e-08!41;UBERON:0001890!5.83e-08!41;UBERON:0006240!5.83e-08!41;UBERON:0002346!8.15e-08!90;UBERON:0003566!9.90e-08!2;UBERON:0001777!9.90e-08!2;UBERON:0005800!1.09e-07!2;UBERON:0001515!1.09e-07!2;UBERON:0007023!2.24e-07!115 | |ontology_enrichment_uberon=UBERON:0001950!8.20e-13!20;UBERON:0002619!1.60e-11!22;UBERON:0001869!8.08e-11!32;UBERON:0003056!1.49e-10!61;UBERON:0001893!4.70e-10!34;UBERON:0000956!5.78e-10!25;UBERON:0000203!5.78e-10!25;UBERON:0000119!1.31e-09!312;UBERON:0002067!2.93e-09!9;UBERON:0004016!2.93e-09!9;UBERON:0010083!2.93e-09!9;UBERON:0003080!2.99e-09!42;UBERON:0000483!3.92e-09!309;UBERON:0002791!1.00e-08!33;UBERON:0002020!2.06e-08!34;UBERON:0003528!2.06e-08!34;UBERON:0003075!2.26e-08!86;UBERON:0007284!2.26e-08!86;UBERON:0000200!3.41e-08!6;UBERON:0005969!5.82e-08!2;UBERON:0003956!5.82e-08!2;UBERON:0002780!5.83e-08!41;UBERON:0001890!5.83e-08!41;UBERON:0006240!5.83e-08!41;UBERON:0002346!8.15e-08!90;UBERON:0003566!9.90e-08!2;UBERON:0001777!9.90e-08!2;UBERON:0005800!1.09e-07!2;UBERON:0001515!1.09e-07!2;UBERON:0007023!2.24e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0005969;4.55e-29;2!UBERON:0003956;4.55e-29;2!UBERON:0007029;2.75e-15;1!UBERON:0002067;5.15e-15;9!UBERON:0002203;2.29e-10;6!UBERON:0001768;2.29e-10;6!UBERON:0002200;2.29e-10;6!UBERON:0001801;1.04e-09;14!UBERON:0001281;1.86e-08;2!UBERON:0003497;1.86e-08;2!UBERON:0003909;1.86e-08;2!UBERON:0003566;1.86e-08;2!UBERON:0003835;1.86e-08;2!UBERON:0001777;1.86e-08;2!UBERON:0000019;2.71e-07;19!UBERON:0000047;2.71e-07;19!UBERON:0004088;2.71e-07;19!UBERON:0010230;2.71e-07;19!UBERON:0000970;5.92e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005969,6.99e-29,2;UBERON:0003956,6.99e-29,2;UBERON:0007029,2.38e-15,1;UBERON:0002067,4.91e-15,9;UBERON:0004016,4.91e-15,9;UBERON:0010083,4.91e-15,9;UBERON:0002203,2.64e-10,6;UBERON:0001768,2.64e-10,6;UBERON:0002200,2.64e-10,6;UBERON:0001801,1.21e-09,14;UBERON:0001281,1.86e-08,2;UBERON:0003497,1.86e-08,2;UBERON:0003909,1.86e-08,2;UBERON:0003835,1.86e-08,2;UBERON:0003566,2.15e-08,2;UBERON:0001777,2.15e-08,2;UBERON:0000019,6.56e-07,20;UBERON:0000047,6.56e-07,20;UBERON:0010312,6.56e-07,20;UBERON:0004088,6.56e-07,20;UBERON:0010230,6.56e-07,20;UBERON:0003072,6.56e-07,20;UBERON:0004128,6.56e-07,20;UBERON:0003071,6.56e-07,20 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92092654289215,6.61693001737215,5.85015026283007,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0.367663080345869,0.81014194788176,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0.149448680551801,3.64046945795671,3.56120477609889,2.52811452064047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,2.07986957055916,0,0,0,0,0,0,0,0,0,1.17002132569619,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0.142977993658148,1.62786481617433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587403472388222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,1.13841952129715,2.0996083214699,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364497339948148,0,0.157611414598396,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974301544196942,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0.526182188502793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92092654289215,6.61693001737215,5.85015026283007,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0.367663080345869,0.81014194788176,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0.149448680551801,3.64046945795671,3.56120477609889,2.52811452064047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,2.07986957055916,0,0,0,0,0,0,0,0,0,1.17002132569619,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0.142977993658148,1.62786481617433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587403472388222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,1.13841952129715,2.0996083214699,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364497339948148,0,0.157611414598396,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.974301544196942,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0.526182188502793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:153744081..153744096,+ | |short_description=p@chr1:153744081..153744096,+ | ||
}} | }} |
Latest revision as of 21:51, 27 July 2015
Short description: | p@chr1:153744081..153744096, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:153744081..153744096, + |
Coexpression cluster: | C54_Dendritic_Macrophage_Monocytederived_CD14_leiomyoma_adipose_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trabecular meshwork cell | 6.99e-29 | 2 |
immature conventional dendritic cell | 2.28e-22 | 5 |
common dendritic progenitor | 2.28e-22 | 5 |
fibroblast of dermis | 3.27e-22 | 6 |
conventional dendritic cell | 3.87e-15 | 8 |
dendritic cell | 1.69e-12 | 10 |
endothelial cell of sinusoid | 1.86e-08 | 2 |
endothelial cell of hepatic sinusoid | 1.86e-08 | 2 |
keratocyte | 2.15e-08 | 2 |
migratory cranial neural crest cell | 2.15e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
reticulum trabeculare | 6.99e-29 | 2 |
aqueous drainage system | 6.99e-29 | 2 |
surface | 2.38e-15 | 1 |
dermis | 4.91e-15 | 9 |
dermatome | 4.91e-15 | 9 |
future dermis | 4.91e-15 | 9 |
vasculature of eye | 2.64e-10 | 6 |
uvea | 2.64e-10 | 6 |
vasculature of head | 2.64e-10 | 6 |
anterior segment of eyeball | 1.21e-09 | 14 |
hepatic sinusoid | 1.86e-08 | 2 |
abdomen blood vessel | 1.86e-08 | 2 |
sinusoid | 1.86e-08 | 2 |
abdominal segment blood vessel | 1.86e-08 | 2 |
head connective tissue | 2.15e-08 | 2 |
substantia propria of cornea | 2.15e-08 | 2 |
camera-type eye | 6.56e-07 | 20 |
simple eye | 6.56e-07 | 20 |
immature eye | 6.56e-07 | 20 |
ocular region | 6.56e-07 | 20 |
eyeball of camera-type eye | 6.56e-07 | 20 |
optic cup | 6.56e-07 | 20 |
optic vesicle | 6.56e-07 | 20 |
eye primordium | 6.56e-07 | 20 |