FFCP PHASE1:Hg19::chr19:572587..572605,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=682 | |EntrezGene=682 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1116 | |HGNC=1116 | ||
|TSSclassifier=strong | |||
|UniProt=P35613,Q54A51 | |UniProt=P35613,Q54A51 | ||
|association_with_transcript=50bp_to_ENST00000333511,ENST00000353555,NM_001728,NM_198589,uc002loz.2,uc002lpa.2,uc002lpb.2,uc010drr.2_5end | |association_with_transcript=50bp_to_ENST00000333511,ENST00000353555,NM_001728,NM_198589,uc002loz.2,uc002lpa.2,uc002lpb.2,uc010drr.2_5end | ||
|cluster_id=chr19:572587..572605,+ | |||
|description=CAGE_peak_1_at_BSG_5end | |description=CAGE_peak_1_at_BSG_5end | ||
|id=chr19:572587..572605,+ | |id=chr19:572587..572605,+ | ||
|ontology_enrichment_celltype=CL:0002321!2.14e-20!248;CL:0000220!6.18e-20!246;CL:0000066!7.08e-18!254;CL:0000325!1.57e-09!39;CL:0000055!1.03e-08!180;CL:0000222!1.47e-08!119;CL:0000075!3.14e-08!27;CL:0002077!5.99e-08!33;CL:0000147!5.96e-07!14 | |ontology_enrichment_celltype=CL:0002321!2.14e-20!248;CL:0000220!6.18e-20!246;CL:0000066!7.08e-18!254;CL:0000325!1.57e-09!39;CL:0000055!1.03e-08!180;CL:0000222!1.47e-08!119;CL:0000075!3.14e-08!27;CL:0002077!5.99e-08!33;CL:0000147!5.96e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000075;3.11e-08;27!CL:0002077;1.91e-07;34!CL:0000147;5.98e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.73e-20,250;CL:0000066,8.33e-18,253;CL:0000222,1.30e-08,121;CL:0000075,3.14e-08,27;CL:0002077,3.66e-08,34;CL:0000147,5.96e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.47e-15!659;UBERON:0000119!8.11e-14!312;UBERON:0000475!1.17e-13!365;UBERON:0000483!2.57e-13!309;UBERON:0001009!3.87e-13!113;UBERON:0000481!5.69e-12!347;UBERON:0004535!7.87e-12!110;UBERON:0003914!4.31e-11!118;UBERON:0000480!2.46e-10!626;UBERON:0000467!2.60e-10!625;UBERON:0002049!6.04e-10!79;UBERON:0007798!6.04e-10!79;UBERON:0002104!4.09e-09!21;UBERON:0000477!5.84e-09!286;UBERON:0004872!5.89e-09!84;UBERON:0005085!7.61e-09!29;UBERON:0000922!8.32e-09!612;UBERON:0000970!8.63e-09!20;UBERON:0000019!1.72e-08!19;UBERON:0000047!1.72e-08!19;UBERON:0004088!1.72e-08!19;UBERON:0003072!1.72e-08!19;UBERON:0003071!1.72e-08!19;UBERON:0004128!1.72e-08!19;UBERON:0000064!1.76e-08!219;UBERON:0001032!2.91e-08!24;UBERON:0004456!2.91e-08!24;UBERON:0002100!3.78e-08!216;UBERON:0004111!6.11e-08!241;UBERON:0001456!6.12e-08!21;UBERON:0000020!6.15e-08!23;UBERON:0000923!7.52e-08!604;UBERON:0005291!7.52e-08!604;UBERON:0006598!7.52e-08!604;UBERON:0002532!7.52e-08!604;UBERON:0002050!8.13e-08!605;UBERON:0005423!8.13e-08!605;UBERON:0000055!1.27e-07!69;UBERON:0001637!1.79e-07!42;UBERON:0003509!1.79e-07!42;UBERON:0004572!1.79e-07!42;UBERON:0003104!2.22e-07!238;UBERON:0009142!2.22e-07!238;UBERON:0000025!4.02e-07!194;UBERON:0003103!5.25e-07!69;UBERON:0001981!5.30e-07!60;UBERON:0007500!5.30e-07!60;UBERON:0004537!5.30e-07!60;UBERON:0006965!5.30e-07!60;UBERON:0005256!6.24e-07!143 | |ontology_enrichment_uberon=UBERON:0000468!2.47e-15!659;UBERON:0000119!8.11e-14!312;UBERON:0000475!1.17e-13!365;UBERON:0000483!2.57e-13!309;UBERON:0001009!3.87e-13!113;UBERON:0000481!5.69e-12!347;UBERON:0004535!7.87e-12!110;UBERON:0003914!4.31e-11!118;UBERON:0000480!2.46e-10!626;UBERON:0000467!2.60e-10!625;UBERON:0002049!6.04e-10!79;UBERON:0007798!6.04e-10!79;UBERON:0002104!4.09e-09!21;UBERON:0000477!5.84e-09!286;UBERON:0004872!5.89e-09!84;UBERON:0005085!7.61e-09!29;UBERON:0000922!8.32e-09!612;UBERON:0000970!8.63e-09!20;UBERON:0000019!1.72e-08!19;UBERON:0000047!1.72e-08!19;UBERON:0004088!1.72e-08!19;UBERON:0003072!1.72e-08!19;UBERON:0003071!1.72e-08!19;UBERON:0004128!1.72e-08!19;UBERON:0000064!1.76e-08!219;UBERON:0001032!2.91e-08!24;UBERON:0004456!2.91e-08!24;UBERON:0002100!3.78e-08!216;UBERON:0004111!6.11e-08!241;UBERON:0001456!6.12e-08!21;UBERON:0000020!6.15e-08!23;UBERON:0000923!7.52e-08!604;UBERON:0005291!7.52e-08!604;UBERON:0006598!7.52e-08!604;UBERON:0002532!7.52e-08!604;UBERON:0002050!8.13e-08!605;UBERON:0005423!8.13e-08!605;UBERON:0000055!1.27e-07!69;UBERON:0001637!1.79e-07!42;UBERON:0003509!1.79e-07!42;UBERON:0004572!1.79e-07!42;UBERON:0003104!2.22e-07!238;UBERON:0009142!2.22e-07!238;UBERON:0000025!4.02e-07!194;UBERON:0003103!5.25e-07!69;UBERON:0001981!5.30e-07!60;UBERON:0007500!5.30e-07!60;UBERON:0004537!5.30e-07!60;UBERON:0006965!5.30e-07!60;UBERON:0005256!6.24e-07!143 | ||
|ontology_enrichment_uberon_v019=UBERON:0002104;4.11e-09;21!UBERON:0000970;8.65e-09;20!UBERON:0000019;1.71e-08;19!UBERON:0000047;1.71e-08;19!UBERON:0004088;1.71e-08;19!UBERON:0010230;1.71e-08;19!UBERON:0001032;2.91e-08;24!UBERON:0004456;2.91e-08;24!UBERON:0001456;6.12e-08;21!UBERON:0000020;6.13e-08;23!UBERON:0010371;1.77e-07;31 | |||
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81776107923,111.237266829222 | ||
|short_description=p1@BSG | |short_description=p1@BSG | ||
}} | }} |
Latest revision as of 04:51, 20 September 2015
Short description: | p1@BSG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BSG_5end |
Coexpression cluster: | NA |
Association with transcript: | 50bp_to_ENST00000333511, ENST00000353555, NM_001728, NM_198589, uc002loz.2, uc002lpa.2, uc002lpb.2, uc010drr.2_5end |
EntrezGene: | BSG |
HGNC: | 1116 |
UniProt: | P35613Q54A51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.73e-20 | 250 |
epithelial cell | 8.33e-18 | 253 |
mesodermal cell | 1.30e-08 | 121 |
columnar/cuboidal epithelial cell | 3.14e-08 | 27 |
ecto-epithelial cell | 3.66e-08 | 34 |
pigment cell | 5.96e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
cell layer | 6.16e-15 | 309 |
epithelium | 2.04e-14 | 306 |
circulatory system | 2.89e-13 | 112 |
cardiovascular system | 6.01e-12 | 109 |
epithelial tube | 4.77e-11 | 117 |
vasculature | 4.42e-10 | 78 |
vascular system | 4.42e-10 | 78 |
ectodermal placode | 2.22e-09 | 31 |
eye | 4.09e-09 | 21 |
visual system | 4.09e-09 | 21 |
splanchnic layer of lateral plate mesoderm | 4.51e-09 | 83 |
camera-type eye | 8.16e-09 | 20 |
simple eye | 8.16e-09 | 20 |
immature eye | 8.16e-09 | 20 |
ocular region | 8.16e-09 | 20 |
eyeball of camera-type eye | 8.16e-09 | 20 |
optic cup | 8.16e-09 | 20 |
optic vesicle | 8.16e-09 | 20 |
eye primordium | 8.16e-09 | 20 |
trunk | 2.67e-08 | 199 |
face | 2.90e-08 | 22 |
sense organ | 2.91e-08 | 24 |
sensory system | 2.91e-08 | 24 |
entire sense organ system | 2.91e-08 | 24 |
anatomical conduit | 3.61e-08 | 240 |
embryo | 5.83e-08 | 592 |
vessel | 9.72e-08 | 68 |
artery | 1.79e-07 | 42 |
arterial blood vessel | 1.79e-07 | 42 |
arterial system | 1.79e-07 | 42 |
mesenchyme | 3.49e-07 | 160 |
entire embryonic mesenchyme | 3.49e-07 | 160 |
tube | 3.71e-07 | 192 |
epithelial tube open at both ends | 4.00e-07 | 59 |
blood vessel | 4.00e-07 | 59 |
blood vasculature | 4.00e-07 | 59 |
vascular cord | 4.00e-07 | 59 |
compound organ | 5.71e-07 | 68 |