FFCP PHASE1:Hg19::chr9:32526299..32526346,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23586 | |EntrezGene=23586 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19102 | |HGNC=19102 | ||
|TSSclassifier=strong | |||
|UniProt=O95786,F5GY09 | |UniProt=O95786,F5GY09 | ||
|association_with_transcript=0bp_to_ENST00000379882,ENST00000379883,ENST00000542960,NM_014314,uc003zra.2,uc010mjj.2,uc010mjk.1,uc011lnr.1_5end | |association_with_transcript=0bp_to_ENST00000379882,ENST00000379883,ENST00000542960,NM_014314,uc003zra.2,uc010mjj.2,uc010mjk.1,uc011lnr.1_5end | ||
|cluster_id=chr9:32526299..32526346,- | |||
|coexpression_cluster_id=C57 | |||
|description=CAGE_peak_2_at_DDX58_5end | |description=CAGE_peak_2_at_DDX58_5end | ||
|id=chr9:32526299..32526346,- | |id=chr9:32526299..32526346,- | ||
|ontology_enrichment_celltype=CL:0000037!8.67e-40!172;CL:0000566!8.67e-40!172;CL:0002032!1.16e-37!165;CL:0000837!1.16e-37!165;CL:0000738!1.71e-35!140;CL:0000988!1.14e-34!182;CL:0002087!2.97e-30!119;CL:0002031!3.17e-30!124;CL:0000542!1.63e-28!53;CL:0000051!1.63e-28!53;CL:0000838!5.12e-28!52;CL:0000084!3.36e-14!25;CL:0000827!3.36e-14!25;CL:0000945!3.45e-13!24;CL:0000826!3.45e-13!24;CL:0000763!5.65e-13!112;CL:0000049!5.65e-13!112;CL:0000791!7.13e-13!18;CL:0000789!7.13e-13!18;CL:0002420!7.13e-13!18;CL:0002419!7.13e-13!18;CL:0000790!7.13e-13!18;CL:0000766!6.47e-10!76;CL:0000236!7.20e-10!14;CL:0000625!7.22e-09!11;CL:0000839!1.13e-07!70;CL:0002057!2.96e-07!42 | |ontology_enrichment_celltype=CL:0000037!8.67e-40!172;CL:0000566!8.67e-40!172;CL:0002032!1.16e-37!165;CL:0000837!1.16e-37!165;CL:0000738!1.71e-35!140;CL:0000988!1.14e-34!182;CL:0002087!2.97e-30!119;CL:0002031!3.17e-30!124;CL:0000542!1.63e-28!53;CL:0000051!1.63e-28!53;CL:0000838!5.12e-28!52;CL:0000084!3.36e-14!25;CL:0000827!3.36e-14!25;CL:0000945!3.45e-13!24;CL:0000826!3.45e-13!24;CL:0000763!5.65e-13!112;CL:0000049!5.65e-13!112;CL:0000791!7.13e-13!18;CL:0000789!7.13e-13!18;CL:0002420!7.13e-13!18;CL:0002419!7.13e-13!18;CL:0000790!7.13e-13!18;CL:0000766!6.47e-10!76;CL:0000236!7.20e-10!14;CL:0000625!7.22e-09!11;CL:0000839!1.13e-07!70;CL:0002057!2.96e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000542;9.03e-23;53!CL:0000084;8.56e-20;25!CL:0000791;2.01e-19;18!CL:0000789;2.01e-19;18!CL:0002419;2.01e-19;18!CL:0000945;1.02e-17;24!CL:0000625;4.27e-13;11!CL:0000236;1.33e-12;13!CL:0002087;5.65e-12;104!CL:0000738;2.37e-08;136!CL:0000094;1.41e-07;8!CL:0000988;1.69e-07;177!CL:0000624;3.44e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.65e-45,168;CL:0002032,1.12e-42,161;CL:0000837,1.12e-42,161;CL:0000738,4.76e-42,136;CL:0000988,3.01e-41,177;CL:0000542,5.95e-40,53;CL:0000051,5.95e-40,53;CL:0000838,3.61e-39,52;CL:0002087,4.20e-36,115;CL:0002031,3.14e-35,120;CL:0000084,6.27e-20,25;CL:0000827,6.27e-20,25;CL:0000791,2.08e-19,18;CL:0000789,2.08e-19,18;CL:0002420,2.08e-19,18;CL:0002419,2.08e-19,18;CL:0000790,2.08e-19,18;CL:0000945,2.09e-17,24;CL:0000826,2.09e-17,24;CL:0000236,2.33e-13,14;CL:0000625,4.34e-13,11;CL:0000763,3.00e-11,108;CL:0000049,3.00e-11,108;CL:0000766,3.56e-09,72;CL:0002393,2.20e-08,9;CL:0002397,2.20e-08,9;CL:0000094,1.13e-07,8;CL:0000624,3.44e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;9.03e-23;53!CL:0000790;2.01e-19;18 | |||
|ontology_enrichment_disease=DOID:2531!3.61e-09!51;DOID:0060083!3.61e-09!51;DOID:1240!2.42e-07!39 | |ontology_enrichment_disease=DOID:2531!3.61e-09!51;DOID:0060083!3.61e-09!51;DOID:1240!2.42e-07!39 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.12e-09,51;DOID:0060083,4.12e-09,51;DOID:1240,5.62e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.27e-15!115;UBERON:0002390!1.15e-12!102;UBERON:0003061!1.15e-12!102;UBERON:0002193!1.32e-10!112;UBERON:0000178!3.52e-07!15;UBERON:0000179!3.52e-07!15;UBERON:0000463!3.52e-07!15 | |ontology_enrichment_uberon=UBERON:0007023!3.27e-15!115;UBERON:0002390!1.15e-12!102;UBERON:0003061!1.15e-12!102;UBERON:0002193!1.32e-10!112;UBERON:0000178!3.52e-07!15;UBERON:0000179!3.52e-07!15;UBERON:0000463!3.52e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.56e-09;15!UBERON:0000179;1.56e-09;15!UBERON:0000463;1.56e-09;15!UBERON:0002390;3.16e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.58e-13,98;UBERON:0003061,1.58e-13,98;UBERON:0002193,2.20e-12,108;UBERON:0007023,1.23e-09,114;UBERON:0000178,1.59e-09,15;UBERON:0000179,1.59e-09,15;UBERON:0000463,1.59e-09,15;UBERON:0004177,1.47e-07,7;UBERON:0005057,1.47e-07,7;UBERON:0002405,4.69e-07,93 | |||
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| ||
|short_description=p2@DDX58 | |short_description=p2@DDX58 | ||
}} | }} |
Latest revision as of 02:36, 17 September 2015
Short description: | p2@DDX58 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DDX58_5end |
Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
Association with transcript: | 0bp_to_ENST00000379882, ENST00000379883, ENST00000542960, NM_014314, uc003zra.2, uc010mjj.2, uc010mjk.1, uc011lnr.1_5end |
EntrezGene: | DDX58 |
HGNC: | 19102 |
UniProt: | O95786F5GY09 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.65e-45 | 168 |
hematopoietic oligopotent progenitor cell | 1.12e-42 | 161 |
hematopoietic multipotent progenitor cell | 1.12e-42 | 161 |
leukocyte | 4.76e-42 | 136 |
hematopoietic cell | 3.01e-41 | 177 |
lymphocyte | 5.95e-40 | 53 |
common lymphoid progenitor | 5.95e-40 | 53 |
lymphoid lineage restricted progenitor cell | 3.61e-39 | 52 |
nongranular leukocyte | 4.20e-36 | 115 |
hematopoietic lineage restricted progenitor cell | 3.14e-35 | 120 |
T cell | 6.27e-20 | 25 |
pro-T cell | 6.27e-20 | 25 |
mature alpha-beta T cell | 2.08e-19 | 18 |
alpha-beta T cell | 2.08e-19 | 18 |
immature T cell | 2.08e-19 | 18 |
mature T cell | 2.08e-19 | 18 |
immature alpha-beta T cell | 2.08e-19 | 18 |
lymphocyte of B lineage | 2.09e-17 | 24 |
pro-B cell | 2.09e-17 | 24 |
B cell | 2.33e-13 | 14 |
CD8-positive, alpha-beta T cell | 4.34e-13 | 11 |
myeloid cell | 3.00e-11 | 108 |
common myeloid progenitor | 3.00e-11 | 108 |
myeloid leukocyte | 3.56e-09 | 72 |
intermediate monocyte | 2.20e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.20e-08 | 9 |
granulocyte | 1.13e-07 | 8 |
CD4-positive, alpha-beta T cell | 3.44e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.58e-13 | 98 |
blood island | 1.58e-13 | 98 |
hemolymphoid system | 2.20e-12 | 108 |
adult organism | 1.23e-09 | 114 |
blood | 1.59e-09 | 15 |
haemolymphatic fluid | 1.59e-09 | 15 |
organism substance | 1.59e-09 | 15 |
hemopoietic organ | 1.47e-07 | 7 |
immune organ | 1.47e-07 | 7 |
immune system | 4.69e-07 | 93 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.12e-09 | 51 |
immune system cancer | 4.12e-09 | 51 |
leukemia | 5.62e-07 | 39 |