FFCP PHASE1:Hg19::chr9:139095013..139095024,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8022 | |EntrezGene=8022 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6595 | |HGNC=6595 | ||
|TSSclassifier=strong | |||
|UniProt=E7ETP3,F1T0D9,Q9UBR4 | |UniProt=E7ETP3,F1T0D9,Q9UBR4 | ||
|association_with_transcript=-9bp_to_ENST00000325195,ENST00000371746,NM_014564,uc004cgz.2_5end | |association_with_transcript=-9bp_to_ENST00000325195,ENST00000371746,NM_014564,uc004cgz.2_5end | ||
|cluster_id=chr9:139095013..139095024,- | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_3_at_LHX3_5end | |description=CAGE_peak_3_at_LHX3_5end | ||
|id=chr9:139095013..139095024,- | |id=chr9:139095013..139095024,- | ||
|ontology_enrichment_celltype=CL:0000242!7.70e-21!2;CL:0002563!2.25e-10!4;CL:0000312!6.87e-09!5;CL:0000095!2.05e-08!17;CL:0000123!2.05e-08!17;CL:0000240!1.52e-07!6;CL:0000311!1.52e-07!6;CL:0000079!1.52e-07!6;CL:0000237!1.52e-07!6;CL:0000036!1.52e-07!6;CL:0000357!1.52e-07!6;CL:0000114!1.52e-07!6 | |ontology_enrichment_celltype=CL:0000242!7.70e-21!2;CL:0002563!2.25e-10!4;CL:0000312!6.87e-09!5;CL:0000095!2.05e-08!17;CL:0000123!2.05e-08!17;CL:0000240!1.52e-07!6;CL:0000311!1.52e-07!6;CL:0000079!1.52e-07!6;CL:0000237!1.52e-07!6;CL:0000036!1.52e-07!6;CL:0000357!1.52e-07!6;CL:0000114!1.52e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000123;7.41e-67;2!CL:0000242;7.41e-67;2!CL:0000312;1.59e-27;5!CL:0000240;3.88e-23;6!CL:0000311;3.88e-23;6!CL:0000079;3.88e-23;6!CL:0000237;3.88e-23;6!CL:0000095;1.75e-16;17!CL:0000362;8.39e-16;9!CL:0002319;7.72e-12;25!CL:0002159;1.57e-10;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,7.41e-67,2;CL:0000312,1.59e-27,5;CL:0000240,3.88e-23,6;CL:0000311,3.88e-23,6;CL:0000079,3.88e-23,6;CL:0000237,3.88e-23,6;CL:0000036,3.88e-23,6;CL:0000357,3.88e-23,6;CL:0000114,3.88e-23,6;CL:0000095,1.75e-16,17;CL:0000123,1.75e-16,17;CL:0000362,8.39e-16,9;CL:0002319,7.72e-12,25;CL:0002159,1.57e-10,14;CL:0000333,1.06e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000357;3.88e-23;6!CL:0000114;3.88e-23;6!UBERON:0003056;2.31e-12;3 | |||
|ontology_enrichment_disease=DOID:3119!4.88e-11!14 | |ontology_enrichment_disease=DOID:3119!4.88e-11!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003296!4.50e-39!4;UBERON:0010133!4.50e-39!4;UBERON:0001894!1.75e-22!7;UBERON:0006222!1.75e-22!7;UBERON:0001905!1.39e-20!2;UBERON:0002757!1.39e-20!2;UBERON:0010134!1.39e-20!2;UBERON:0002784!1.39e-20!2;UBERON:0005408!1.39e-20!2;UBERON:0001899!1.39e-20!2;UBERON:0000007!2.49e-20!2;UBERON:0001242!2.25e-10!4;UBERON:0001262!2.25e-10!4;UBERON:0004786!2.25e-10!4;UBERON:0004808!2.25e-10!4;UBERON:0001277!2.25e-10!4;UBERON:0003350!1.79e-08!5;UBERON:0002368!9.19e-07!35 | |ontology_enrichment_uberon=UBERON:0003296!4.50e-39!4;UBERON:0010133!4.50e-39!4;UBERON:0001894!1.75e-22!7;UBERON:0006222!1.75e-22!7;UBERON:0001905!1.39e-20!2;UBERON:0002757!1.39e-20!2;UBERON:0010134!1.39e-20!2;UBERON:0002784!1.39e-20!2;UBERON:0005408!1.39e-20!2;UBERON:0001899!1.39e-20!2;UBERON:0000007!2.49e-20!2;UBERON:0001242!2.25e-10!4;UBERON:0001262!2.25e-10!4;UBERON:0004786!2.25e-10!4;UBERON:0004808!2.25e-10!4;UBERON:0001277!2.25e-10!4;UBERON:0003350!1.79e-08!5;UBERON:0002368!9.19e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0003296;1.16e-73;4!UBERON:0010133;1.16e-73;4!UBERON:0001905;5.53e-66;2!UBERON:0002757;5.53e-66;2!UBERON:0010134;5.53e-66;2!UBERON:0005408;5.53e-66;2!UBERON:0001899;5.53e-66;2!UBERON:0001894;1.42e-42;7!UBERON:0002784;1.17e-33;4!UBERON:0000007;1.27e-17;2!UBERON:0001003;6.78e-10;15!UBERON:0007376;6.78e-10;15!UBERON:0002368;5.10e-09;33!UBERON:0000966;6.13e-08;5!UBERON:0005388;6.13e-08;5!UBERON:0001802;6.13e-08;5!UBERON:0000949;3.98e-07;43!UBERON:0000955;6.23e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,1.16e-73,4;UBERON:0010133,1.16e-73,4;UBERON:0001905,5.53e-66,2;UBERON:0002757,5.53e-66,2;UBERON:0010134,5.53e-66,2;UBERON:0005408,5.53e-66,2;UBERON:0001899,5.53e-66,2;UBERON:0001894,1.42e-42,7;UBERON:0006222,1.42e-42,7;UBERON:0002784,1.17e-33,4;UBERON:0000007,1.27e-17,2;UBERON:0010371,9.68e-12,104;UBERON:0001003,6.78e-10,15;UBERON:0007376,6.78e-10,15;UBERON:0007383,6.78e-10,15;UBERON:0002368,3.43e-09,35;UBERON:0003056,4.72e-09,61;UBERON:0000955,4.48e-08,68;UBERON:0006238,4.48e-08,68;UBERON:0002780,8.93e-08,41;UBERON:0001890,8.93e-08,41;UBERON:0003080,8.93e-08,41;UBERON:0006240,8.93e-08,41;UBERON:0000949,2.66e-07,45;UBERON:0004121,3.21e-07,171;UBERON:0000924,3.21e-07,171;UBERON:0006601,3.21e-07,171;UBERON:0001017,6.96e-07,81;UBERON:0003075,6.96e-07,82;UBERON:0007284,6.96e-07,82;UBERON:0000966,8.02e-07,6;UBERON:0005388,8.02e-07,6;UBERON:0001802,8.02e-07,6 | |||
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|short_description=p3@LHX3 | |short_description=p3@LHX3 | ||
}} | }} |
Latest revision as of 11:34, 16 September 2015
Short description: | p3@LHX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LHX3_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | -9bp_to_ENST00000325195, ENST00000371746, NM_014564, uc004cgz.2_5end |
EntrezGene: | LHX3 |
HGNC: | 6595 |
UniProt: | E7ETP3F1T0D9Q9UBR4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 7.41e-67 | 2 |
keratinocyte | 1.59e-27 | 5 |
stratified squamous epithelial cell | 3.88e-23 | 6 |
keratin accumulating cell | 3.88e-23 | 6 |
stratified epithelial cell | 3.88e-23 | 6 |
keratinizing barrier epithelial cell | 3.88e-23 | 6 |
epithelial fate stem cell | 3.88e-23 | 6 |
stratified epithelial stem cell | 3.88e-23 | 6 |
surface ectodermal cell | 3.88e-23 | 6 |
neuron associated cell | 1.75e-16 | 17 |
neuron associated cell (sensu Vertebrata) | 1.75e-16 | 17 |
epidermal cell | 8.39e-16 | 9 |
neural cell | 7.72e-12 | 25 |
general ecto-epithelial cell | 1.57e-10 | 14 |
migratory neural crest cell | 1.06e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 1.16e-73 | 4 |
neuroendocrine gland | 1.16e-73 | 4 |
pineal body | 5.53e-66 | 2 |
regional part of epithalamus | 5.53e-66 | 2 |
secretory circumventricular organ | 5.53e-66 | 2 |
circumventricular organ | 5.53e-66 | 2 |
epithalamus | 5.53e-66 | 2 |
diencephalon | 1.42e-42 | 7 |
future diencephalon | 1.42e-42 | 7 |
regional part of diencephalon | 1.17e-33 | 4 |
pituitary gland | 1.27e-17 | 2 |
ecto-epithelium | 9.68e-12 | 104 |
skin epidermis | 6.78e-10 | 15 |
outer epithelium | 6.78e-10 | 15 |
enveloping layer of ectoderm | 6.78e-10 | 15 |
endocrine gland | 3.43e-09 | 35 |
pre-chordal neural plate | 4.72e-09 | 61 |
brain | 4.48e-08 | 68 |
future brain | 4.48e-08 | 68 |
regional part of forebrain | 8.93e-08 | 41 |
forebrain | 8.93e-08 | 41 |
anterior neural tube | 8.93e-08 | 41 |
future forebrain | 8.93e-08 | 41 |
endocrine system | 2.66e-07 | 45 |
ectoderm-derived structure | 3.21e-07 | 171 |
ectoderm | 3.21e-07 | 171 |
presumptive ectoderm | 3.21e-07 | 171 |
central nervous system | 6.96e-07 | 81 |
neural plate | 6.96e-07 | 82 |
presumptive neural plate | 6.96e-07 | 82 |
retina | 8.02e-07 | 6 |
photoreceptor array | 8.02e-07 | 6 |
posterior segment of eyeball | 8.02e-07 | 6 |