FFCP PHASE1:Hg19::chr16:85936412..85936431,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:85936412..85936431,+
|short_description=p2@IRF8
|description=CAGE_peak_2_at_IRF8_5end
|association_with_transcript=94bp_to_uc002fji.2_5end
|EntrezGene=33...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3394 | |EntrezGene=3394 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5358 | |HGNC=5358 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=94bp_to_uc002fji.2_5end | |||
|cluster_id=chr16:85936412..85936431,+ | |||
|coexpression_cluster_id=C44 | |||
|description=CAGE_peak_2_at_IRF8_5end | |||
|id=chr16:85936412..85936431,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.01e-53!140;CL:0002087!6.07e-49!119;CL:0000037!9.86e-45!172;CL:0000566!9.86e-45!172;CL:0000988!6.95e-41!182;CL:0002031!8.34e-41!124;CL:0000542!1.29e-40!53;CL:0000051!1.29e-40!53;CL:0000838!3.30e-39!52;CL:0002032!2.63e-37!165;CL:0000837!2.63e-37!165;CL:0000945!6.06e-36!24;CL:0000826!6.06e-36!24;CL:0000236!1.15e-23!14;CL:0000766!1.07e-10!76;CL:0002194!1.87e-10!63;CL:0000576!1.87e-10!63;CL:0000040!1.87e-10!63;CL:0000559!1.87e-10!63;CL:0002009!6.50e-10!65;CL:0000839!1.85e-09!70;CL:0000134!2.30e-09!358;CL:0000557!3.18e-09!71;CL:0002320!8.49e-09!365;CL:0002057!1.66e-08!42;CL:0000763!2.98e-08!112;CL:0000049!2.98e-08!112;CL:0000860!1.30e-07!45;CL:0000625!1.50e-07!11;CL:0000084!2.77e-07!25;CL:0000827!2.77e-07!25;CL:0000219!3.18e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.72e-70;24!CL:0000236;2.36e-42;13!CL:0000542;1.69e-27;53!CL:0000784;8.70e-12;3!CL:0002087;7.24e-09;104!CL:0000738;7.76e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.43e-70,24;CL:0000826,1.43e-70,24;CL:0000542,3.94e-46,53;CL:0000051,3.94e-46,53;CL:0000236,1.67e-45,14;CL:0000838,9.33e-44,52;CL:0002087,1.02e-35,115;CL:0000738,2.23e-34,136;CL:0000037,9.67e-31,168;CL:0000988,1.28e-28,177;CL:0002031,3.37e-28,120;CL:0002032,2.49e-24,161;CL:0000837,2.49e-24,161;CL:0000784,8.71e-12,3;CL:0000817,1.98e-10,3;CL:0000134,6.96e-09,354;CL:0002320,1.65e-08,361;CL:0000785,9.50e-08,2;CL:0000955,9.50e-08,2;CL:0000818,9.50e-08,2;CL:0000954,9.50e-08,2;CL:0000816,9.50e-08,2;CL:0000219,3.38e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000051;1.69e-27;53!CL:0000954;9.18e-08;2!UBERON:0004872;1.23e-07;7 | |||
|ontology_enrichment_disease=DOID:0060058!6.33e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;8.27e-12;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,7.97e-12,10;DOID:2531,1.67e-09,51;DOID:0060083,1.67e-09,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.26e-17!102;UBERON:0003061!3.26e-17!102;UBERON:0002193!1.38e-16!112;UBERON:0002405!2.97e-08!115;UBERON:0002371!3.24e-08!80;UBERON:0004177!3.57e-08!7;UBERON:0002384!4.93e-08!375;UBERON:0000178!3.05e-07!15;UBERON:0000179!3.05e-07!15;UBERON:0000463!3.05e-07!15;UBERON:0001474!3.79e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;9.80e-11;3!UBERON:0004177;1.10e-10;5!UBERON:0005057;1.10e-10;5!UBERON:0002390;1.08e-08;32!UBERON:0000178;6.57e-07;15!UBERON:0000179;6.57e-07;15!UBERON:0000463;6.57e-07;15!UBERON:0002193;8.11e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.18e-11,3;UBERON:0004854,8.18e-11,3;UBERON:0009034,8.18e-11,3;UBERON:0002095,8.18e-11,3;UBERON:0004782,8.18e-11,3;UBERON:0003281,8.18e-11,3;UBERON:0009664,8.18e-11,3;UBERON:0002296,8.18e-11,3;UBERON:0005602,8.18e-11,3;UBERON:0001179,8.18e-11,3;UBERON:0006293,8.18e-11,3;UBERON:0002193,1.75e-08,108;UBERON:0002384,5.34e-08,371;UBERON:0002390,8.15e-08,98;UBERON:0003061,8.15e-08,98;UBERON:0004177,1.20e-07,7;UBERON:0005057,1.20e-07,7;UBERON:0000178,6.42e-07,15;UBERON:0000179,6.42e-07,15;UBERON:0000463,6.42e-07,15 | |||
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| ||
|short_description=p2@IRF8 | |||
}} | }} |
Latest revision as of 06:13, 18 September 2015
Short description: | p2@IRF8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_IRF8_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | 94bp_to_uc002fji.2_5end |
EntrezGene: | IRF8 |
HGNC: | 5358 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.43e-70 | 24 |
pro-B cell | 1.43e-70 | 24 |
lymphocyte | 3.94e-46 | 53 |
common lymphoid progenitor | 3.94e-46 | 53 |
B cell | 1.67e-45 | 14 |
lymphoid lineage restricted progenitor cell | 9.33e-44 | 52 |
nongranular leukocyte | 1.02e-35 | 115 |
leukocyte | 2.23e-34 | 136 |
hematopoietic stem cell | 9.67e-31 | 168 |
hematopoietic cell | 1.28e-28 | 177 |
hematopoietic lineage restricted progenitor cell | 3.37e-28 | 120 |
hematopoietic oligopotent progenitor cell | 2.49e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.49e-24 | 161 |
plasmacytoid dendritic cell | 8.71e-12 | 3 |
precursor B cell | 1.98e-10 | 3 |
mesenchymal cell | 6.96e-09 | 354 |
connective tissue cell | 1.65e-08 | 361 |
mature B cell | 9.50e-08 | 2 |
pre-B-II cell | 9.50e-08 | 2 |
transitional stage B cell | 9.50e-08 | 2 |
small pre-B-II cell | 9.50e-08 | 2 |
immature B cell | 9.50e-08 | 2 |
motile cell | 3.38e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
spleen | 8.18e-11 | 3 |
gastrointestinal system mesentery | 8.18e-11 | 3 |
stomach region | 8.18e-11 | 3 |
mesentery | 8.18e-11 | 3 |
gastrointestinal system serosa | 8.18e-11 | 3 |
mesentery of stomach | 8.18e-11 | 3 |
gut mesentery | 8.18e-11 | 3 |
dorsal mesentery | 8.18e-11 | 3 |
dorsal mesogastrium | 8.18e-11 | 3 |
peritoneal cavity | 8.18e-11 | 3 |
spleen primordium | 8.18e-11 | 3 |
hemolymphoid system | 1.75e-08 | 108 |
connective tissue | 5.34e-08 | 371 |
hematopoietic system | 8.15e-08 | 98 |
blood island | 8.15e-08 | 98 |
hemopoietic organ | 1.20e-07 | 7 |
immune organ | 1.20e-07 | 7 |
blood | 6.42e-07 | 15 |
haemolymphatic fluid | 6.42e-07 | 15 |
organism substance | 6.42e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 7.97e-12 | 10 |
hematologic cancer | 1.67e-09 | 51 |
immune system cancer | 1.67e-09 | 51 |