FFCP PHASE1:Hg19::chr7:27208949..27208981,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=236bp_to_ENST00000523790_5end | |association_with_transcript=236bp_to_ENST00000523790_5end | ||
|cluster_id=chr7:27208949..27208981,+ | |||
|coexpression_cluster_id=C516 | |||
|description=CAGE_peak_4_at_ENST00000523790_5end | |description=CAGE_peak_4_at_ENST00000523790_5end | ||
|id=chr7:27208949..27208981,+ | |id=chr7:27208949..27208981,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.80e-16!254;CL:0000244!4.12e-09!4;CL:0000731!4.12e-09!4;CL:1000507!5.65e-07!12;CL:1000494!5.65e-07!12;CL:0000239!9.41e-07!3;CL:1000615!9.41e-07!3;CL:0002306!9.41e-07!3 | |ontology_enrichment_celltype=CL:0000066!6.80e-16!254;CL:0000244!4.12e-09!4;CL:0000731!4.12e-09!4;CL:1000507!5.65e-07!12;CL:1000494!5.65e-07!12;CL:0000239!9.41e-07!3;CL:1000615!9.41e-07!3;CL:0002306!9.41e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000244;7.37e-15;4!CL:0000731;7.37e-15;4!CL:0000167;1.68e-07;1!CL:0000164;1.68e-07;1!CL:0000502;1.68e-07;1!CL:0000172;1.68e-07;1!CL:1001319;1.68e-07;1!CL:1000600;1.68e-07;1!CL:0000173;1.68e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,4.60e-15,4;CL:0000731,4.60e-15,4;CL:0000066,4.81e-13,253;CL:1001319,1.80e-07,1;CL:1000600,1.80e-07,1;CL:0000167,2.63e-07,1;CL:0000164,2.63e-07,1;CL:0000502,2.63e-07,1;CL:0000172,2.63e-07,1;CL:0000173,2.63e-07,1;CL:0002351,2.63e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002351;1.68e-07;1 | |||
|ontology_enrichment_disease=DOID:305!8.28e-23!106;DOID:0050687!1.17e-16!143;DOID:1749!4.52e-11!14;DOID:14566!1.50e-10!239;DOID:162!1.76e-10!235;DOID:4362!9.06e-07!5 | |ontology_enrichment_disease=DOID:305!8.28e-23!106;DOID:0050687!1.17e-16!143;DOID:1749!4.52e-11!14;DOID:14566!1.50e-10!239;DOID:162!1.76e-10!235;DOID:4362!9.06e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:1749;6.09e-16;14!DOID:4430;1.68e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.61e-16,14;DOID:305,1.05e-15,106;DOID:0050687,1.28e-13,143;DOID:162,1.38e-09,235;DOID:14566,2.72e-09,239;DOID:4430,2.63e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0006554!6.63e-21!44;UBERON:0001008!2.83e-20!45;UBERON:0000365!5.53e-11!5;UBERON:0000489!5.87e-10!32;UBERON:0003064!3.00e-09!37;UBERON:0002113!4.51e-09!27;UBERON:0003918!4.51e-09!27;UBERON:0005095!4.51e-09!27;UBERON:0007687!4.51e-09!27;UBERON:0005910!4.72e-09!6;UBERON:0003343!5.36e-09!4;UBERON:0004785!5.36e-09!4;UBERON:0000002!5.77e-08!6;UBERON:0001560!5.77e-08!6;UBERON:0001046!5.91e-08!19;UBERON:0000344!1.40e-07!12;UBERON:0000162!1.80e-07!14;UBERON:0001353!1.80e-07!14;UBERON:0000163!1.80e-07!14;UBERON:0006866!1.80e-07!14;UBERON:0000164!1.80e-07!14;UBERON:0000931!1.80e-07!14;UBERON:0002367!1.87e-07!11;UBERON:0010147!1.87e-07!11;UBERON:0009846!1.87e-07!11;UBERON:0003353!1.87e-07!11;UBERON:0004902!1.87e-07!11;UBERON:0003820!1.87e-07!11;UBERON:0009847!1.87e-07!11;UBERON:0004119!2.48e-07!169;UBERON:0000925!2.48e-07!169;UBERON:0006595!2.48e-07!169;UBERON:0003729!3.69e-07!5;UBERON:0005153!3.94e-07!37;UBERON:0009773!5.65e-07!12;UBERON:0001231!5.65e-07!12;UBERON:0004810!5.65e-07!12;UBERON:0005156!6.18e-07!59;UBERON:0000990!6.18e-07!59;UBERON:0004122!7.10e-07!15;UBERON:0006853!9.41e-07!3;UBERON:0007685!9.41e-07!3;UBERON:0004134!9.41e-07!3;UBERON:0003937!9.66e-07!12;UBERON:0005399!9.66e-07!12 | |ontology_enrichment_uberon=UBERON:0006554!6.63e-21!44;UBERON:0001008!2.83e-20!45;UBERON:0000365!5.53e-11!5;UBERON:0000489!5.87e-10!32;UBERON:0003064!3.00e-09!37;UBERON:0002113!4.51e-09!27;UBERON:0003918!4.51e-09!27;UBERON:0005095!4.51e-09!27;UBERON:0007687!4.51e-09!27;UBERON:0005910!4.72e-09!6;UBERON:0003343!5.36e-09!4;UBERON:0004785!5.36e-09!4;UBERON:0000002!5.77e-08!6;UBERON:0001560!5.77e-08!6;UBERON:0001046!5.91e-08!19;UBERON:0000344!1.40e-07!12;UBERON:0000162!1.80e-07!14;UBERON:0001353!1.80e-07!14;UBERON:0000163!1.80e-07!14;UBERON:0006866!1.80e-07!14;UBERON:0000164!1.80e-07!14;UBERON:0000931!1.80e-07!14;UBERON:0002367!1.87e-07!11;UBERON:0010147!1.87e-07!11;UBERON:0009846!1.87e-07!11;UBERON:0003353!1.87e-07!11;UBERON:0004902!1.87e-07!11;UBERON:0003820!1.87e-07!11;UBERON:0009847!1.87e-07!11;UBERON:0004119!2.48e-07!169;UBERON:0000925!2.48e-07!169;UBERON:0006595!2.48e-07!169;UBERON:0003729!3.69e-07!5;UBERON:0005153!3.94e-07!37;UBERON:0009773!5.65e-07!12;UBERON:0001231!5.65e-07!12;UBERON:0004810!5.65e-07!12;UBERON:0005156!6.18e-07!59;UBERON:0000990!6.18e-07!59;UBERON:0004122!7.10e-07!15;UBERON:0006853!9.41e-07!3;UBERON:0007685!9.41e-07!3;UBERON:0004134!9.41e-07!3;UBERON:0003937!9.66e-07!12;UBERON:0005399!9.66e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;2.34e-20;5!UBERON:0005910;5.30e-17;6!UBERON:0000486;1.42e-08;12!UBERON:0000997;6.79e-08;1!UBERON:0005056;6.79e-08;1!UBERON:0004176;6.79e-08;1!UBERON:0004645;1.68e-07;1!UBERON:0001256;1.68e-07;1!UBERON:0001259;1.68e-07;1!UBERON:0003343;2.39e-07;4!UBERON:0004785;2.39e-07;4!UBERON:0006554;5.59e-07;30!UBERON:0001008;5.59e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.49e-20,5;UBERON:0005910,3.66e-17,6;UBERON:0000997,8.28e-08,1;UBERON:0005056,8.28e-08,1;UBERON:0004645,1.80e-07,1;UBERON:0001256,1.80e-07,1;UBERON:0001259,1.80e-07,1;UBERON:0006554,2.33e-07,47;UBERON:0003343,3.08e-07,4;UBERON:0004785,3.08e-07,4;UBERON:0001008,3.50e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505754070234305,0.241011029883482,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0.614942192715568,0,0,0,1.60846355858609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70161193135412,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20859449591622,0.40101294060657,0.552485933615378,0,0.182091168006717,0,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0.541892875087706,0.501689773854853,1.01950509218015,0.831076008928724,0.447749509444357,0,0,0,0,0,0,0,0,1.14853107599234,0.650060246036521,0,0,0,0,0,0,0.145016693914229,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,1.72202149068492,1.68471475667626,3.10401107475673,0.459446800413919,0,0,0,0,0,0,0,0,0.427296284509893,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99424864653152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709163045303809,0,0,0,0,0,0,0,0,0,0,1.39423744278603,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0.282706142867882,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0.60129367765797,0,0,0,0,0,1.70765727617876,0,19.4386906935347,2.05784034570193,1.65412492502765,0.698906672968121,0,0.19351266257817,0.292357268344742,0.164230914106418,0.0969890164884194,0,0,0,0,0,0.586654148204409,0.160317640503067,0,0,0.576361668616424,0,0,0,0,2.82832841540154,1.76675467895698,2.30126261887133,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,2.32991899054908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57611414598396,0.419636705079985,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,3.83004754662109,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,0.943757786781923,0.733714394086716,3.11919298605913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.894336993477167,0,0,0,0,0,0,0,0,0,0.118193840883968,2.66955364540966,0.078493092850514,0,0,0,0.215927591218621,0,0,0,1.74362138052188,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0.782988022584546,1.66855397145913,0,0,0,0,0,0.701818390386317,1.79055697645231,0,0.79062257427272,0,2.56636834063345,0,0,1.41095188908457,0.245148321753905,1.17838273550813,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54666210360852,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505754070234305,0.241011029883482,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0.614942192715568,0,0,0,1.60846355858609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70161193135412,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20859449591622,0.40101294060657,0.552485933615378,0,0.182091168006717,0,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0.541892875087706,0.501689773854853,1.01950509218015,0.831076008928724,0.447749509444357,0,0,0,0,0,0,0,0,1.14853107599234,0.650060246036521,0,0,0,0,0,0,0.145016693914229,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,1.72202149068492,1.68471475667626,3.10401107475673,0.459446800413919,0,0,0,0,0,0,0,0,0.427296284509893,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99424864653152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709163045303809,0,0,0,0,0,0,0,0,0,0,1.39423744278603,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0.282706142867882,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0.60129367765797,0,0,0,0,0,1.70765727617876,0,19.4386906935347,2.05784034570193,1.65412492502765,0.698906672968121,0,0.19351266257817,0.292357268344742,0.164230914106418,0.0969890164884194,0,0,0,0,0,0.586654148204409,0.160317640503067,0,0,0.576361668616424,0,0,0,0,2.82832841540154,1.76675467895698,2.30126261887133,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,2.32991899054908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57611414598396,0.419636705079985,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,3.83004754662109,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,0.943757786781923,0.733714394086716,3.11919298605913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.894336993477167,0,0,0,0,0,0,0,0,0,0.118193840883968,2.66955364540966,0.078493092850514,0,0,0,0.215927591218621,0,0,0,1.74362138052188,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0.782988022584546,1.66855397145913,0,0,0,0,0,0.701818390386317,1.79055697645231,0,0.79062257427272,0,2.56636834063345,0,0,1.41095188908457,0.245148321753905,1.17838273550813,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54666210360852,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@ENST00000523790 | |short_description=p4@ENST00000523790 | ||
}} | }} |
Latest revision as of 09:04, 31 July 2015
Short description: | p4@ENST00000523790 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ENST00000523790_5end |
Coexpression cluster: | C516_endometrioid_clear_serous_anaplastic_malignant_oral_uterus |
Association with transcript: | 236bp_to_ENST00000523790_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 4.60e-15 | 4 |
urothelial cell | 4.60e-15 | 4 |
epithelial cell | 4.81e-13 | 253 |
bladder cell | 1.80e-07 | 1 |
lower urinary tract cell | 1.80e-07 | 1 |
peptide hormone secreting cell | 2.63e-07 | 1 |
enteroendocrine cell | 2.63e-07 | 1 |
type D enteroendocrine cell | 2.63e-07 | 1 |
somatostatin secreting cell | 2.63e-07 | 1 |
pancreatic D cell | 2.63e-07 | 1 |
progenitor cell of endocrine pancreas | 2.63e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.49e-20 | 5 |
transitional epithelium | 3.66e-17 | 6 |
mammalian vulva | 8.28e-08 | 1 |
external female genitalia | 8.28e-08 | 1 |
urinary bladder urothelium | 1.80e-07 | 1 |
wall of urinary bladder | 1.80e-07 | 1 |
mucosa of urinary bladder | 1.80e-07 | 1 |
urinary system structure | 2.33e-07 | 47 |
mucosa of oral region | 3.08e-07 | 4 |
respiratory system mucosa | 3.08e-07 | 4 |
renal system | 3.50e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.61e-16 | 14 |
carcinoma | 1.05e-15 | 106 |
cell type cancer | 1.28e-13 | 143 |
cancer | 1.38e-09 | 235 |
disease of cellular proliferation | 2.72e-09 | 239 |
somatostatinoma | 2.63e-07 | 1 |