FFCP PHASE1:Hg19::chr16:56643260..56643307,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr16:56643260..56643307,+
|short_description=p@chr16:56643260..56643307,+
|description=CAGE_peak_at_chr16:56643260..56643307,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:56643260..56643307,+ | |||
|coexpression_cluster_id=C3573 | |||
|description=CAGE_peak_at_chr16:56643260..56643307,+ | |||
|id=chr16:56643260..56643307,+ | |||
|ontology_enrichment_celltype=CL:0000222!2.73e-21!119;CL:0000220!1.40e-20!246;CL:0002321!1.12e-19!248;CL:0000680!3.34e-13!57;CL:0000056!3.34e-13!57;CL:0000355!3.34e-13!57;CL:0000183!6.94e-13!59;CL:0000187!1.15e-11!54;CL:0000066!2.09e-11!254;CL:0000055!3.20e-11!180;CL:0000359!3.81e-10!32;CL:0000192!1.34e-09!42;CL:0000514!1.34e-09!42;CL:0000393!1.79e-09!60;CL:0000211!1.79e-09!60;CL:0000076!4.89e-08!62;CL:0000213!8.75e-08!57;CL:0000215!8.75e-08!57;CL:0002368!9.91e-08!13;CL:1000449!2.66e-07!16;CL:0002078!3.72e-07!44;CL:0002139!5.23e-07!24;CL:0000115!5.80e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.67e-10;32!CL:0002368;1.47e-08;13!CL:1000449;3.82e-08;15!CL:0002139;1.27e-07;24!CL:0000192;3.02e-07;43!CL:0000187;3.64e-07;55!CL:0000115;3.92e-07;36!CL:0002202;4.29e-07;9!CL:0002632;4.29e-07;9!CL:1000497;5.14e-07;17!CL:0002518;5.14e-07;17!CL:0002681;8.11e-07;12!CL:0002584;8.11e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.29e-22,121;CL:0002321,1.17e-20,250;CL:0000680,5.97e-13,58;CL:0000056,5.97e-13,58;CL:0000355,5.97e-13,58;CL:0000187,2.62e-11,55;CL:0000359,4.50e-11,32;CL:0000066,1.42e-10,253;CL:0000192,2.00e-09,43;CL:0000514,2.00e-09,43;CL:0000393,2.30e-09,61;CL:0000211,2.30e-09,61;CL:0000213,6.19e-09,58;CL:0000215,6.19e-09,58;CL:0002368,1.71e-08,13;CL:0002078,2.19e-08,45;CL:1000449,3.29e-08,15;CL:0000115,3.45e-08,36;CL:0000076,7.21e-08,63;CL:0002139,1.10e-07,24;CL:1000497,3.42e-07,17;CL:0002518,3.42e-07,17;CL:0002202,4.86e-07,9;CL:0002632,4.86e-07,9;CL:0002681,6.85e-07,12;CL:0002584,6.85e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000355;2.79e-07;58!CL:0000514;3.02e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.04e-24!312;UBERON:0000483!1.35e-23!309;UBERON:0000477!6.33e-19!286;UBERON:0003914!3.57e-18!118;UBERON:0000475!6.35e-18!365;UBERON:0000486!3.37e-17!82;UBERON:0005256!5.42e-17!143;UBERON:0002049!6.74e-17!79;UBERON:0007798!6.74e-17!79;UBERON:0004111!1.19e-16!241;UBERON:0000481!1.26e-16!347;UBERON:0002100!1.29e-15!216;UBERON:0000055!6.95e-15!69;UBERON:0000914!7.00e-15!83;UBERON:0002329!7.00e-15!83;UBERON:0003077!7.00e-15!83;UBERON:0003059!7.00e-15!83;UBERON:0007282!7.00e-15!83;UBERON:0009618!7.00e-15!83;UBERON:0007285!7.00e-15!83;UBERON:0000490!1.08e-14!138;UBERON:0004290!1.09e-14!70;UBERON:0000025!1.17e-14!194;UBERON:0001981!3.93e-13!60;UBERON:0007500!3.93e-13!60;UBERON:0004537!3.93e-13!60;UBERON:0006965!3.93e-13!60;UBERON:0001637!6.05e-13!42;UBERON:0003509!6.05e-13!42;UBERON:0004572!6.05e-13!42;UBERON:0003104!1.18e-12!238;UBERON:0009142!1.18e-12!238;UBERON:0001134!9.79e-12!61;UBERON:0002036!9.79e-12!61;UBERON:0003082!9.79e-12!61;UBERON:0000467!1.98e-11!625;UBERON:0000480!2.82e-11!626;UBERON:0002385!3.88e-11!63;UBERON:0001015!3.88e-11!63;UBERON:0000383!3.88e-11!63;UBERON:0001009!5.08e-11!113;UBERON:0004535!7.94e-11!110;UBERON:0004573!3.60e-10!33;UBERON:0004571!3.60e-10!33;UBERON:0000923!7.00e-10!604;UBERON:0005291!7.00e-10!604;UBERON:0006598!7.00e-10!604;UBERON:0002532!7.00e-10!604;UBERON:0004872!9.31e-10!84;UBERON:0000468!9.51e-10!659;UBERON:0002050!1.24e-09!605;UBERON:0005423!1.24e-09!605;UBERON:0000922!2.54e-08!612;UBERON:0004211!2.66e-07!16;UBERON:0001285!2.66e-07!16;UBERON:0007684!2.66e-07!16;UBERON:0003220!2.66e-07!16;UBERON:0004208!2.66e-07!16;UBERON:0006555!7.27e-07!17;UBERON:0005103!7.27e-07!17;UBERON:0000083!7.27e-07!17;UBERON:0009201!7.27e-07!17;UBERON:0004819!7.27e-07!17;UBERON:0006553!7.27e-07!17;UBERON:0003074!7.27e-07!17;UBERON:0003060!7.27e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.02e-09;33!UBERON:0004571;1.02e-09;33!UBERON:0001637;1.78e-09;42!UBERON:0003509;1.78e-09;42!UBERON:0004572;1.78e-09;42!UBERON:0003914;5.06e-09;74!UBERON:0006555;3.82e-08;15!UBERON:0004819;3.82e-08;15!UBERON:0001285;3.82e-08;15!UBERON:0007684;3.82e-08;15!UBERON:0002049;1.00e-07;75!UBERON:0007798;1.00e-07;75!UBERON:0000055;1.91e-07;65!UBERON:0007500;3.85e-07;56!UBERON:0001981;3.85e-07;56!UBERON:0004537;3.85e-07;56!UBERON:0001225;8.11e-07;12!UBERON:0008987;8.11e-07;12 | |||
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| ||
|short_description=p@chr16:56643260..56643307,+ | |||
}} | }} |
Latest revision as of 10:17, 25 July 2015
Short description: | p@chr16:56643260..56643307, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:56643260..56643307, + |
Coexpression cluster: | C3573_liver_Bronchial_Mesenchymal_Fibroblast_Tracheal_Keratinocyte_Mammary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.29e-22 | 121 |
embryonic cell | 1.17e-20 | 250 |
muscle precursor cell | 5.97e-13 | 58 |
myoblast | 5.97e-13 | 58 |
multi-potent skeletal muscle stem cell | 5.97e-13 | 58 |
muscle cell | 2.62e-11 | 55 |
vascular associated smooth muscle cell | 4.50e-11 | 32 |
epithelial cell | 1.42e-10 | 253 |
smooth muscle cell | 2.00e-09 | 43 |
smooth muscle myoblast | 2.00e-09 | 43 |
electrically responsive cell | 2.30e-09 | 61 |
electrically active cell | 2.30e-09 | 61 |
lining cell | 6.19e-09 | 58 |
barrier cell | 6.19e-09 | 58 |
respiratory epithelial cell | 1.71e-08 | 13 |
meso-epithelial cell | 2.19e-08 | 45 |
epithelial cell of nephron | 3.29e-08 | 15 |
endothelial cell | 3.45e-08 | 36 |
squamous epithelial cell | 7.21e-08 | 63 |
endothelial cell of vascular tree | 1.10e-07 | 24 |
kidney cell | 3.42e-07 | 17 |
kidney epithelial cell | 3.42e-07 | 17 |
epithelial cell of tracheobronchial tree | 4.86e-07 | 9 |
epithelial cell of lower respiratory tract | 4.86e-07 | 9 |
kidney cortical cell | 6.85e-07 | 12 |
renal cortical epithelial cell | 6.85e-07 | 12 |