FFCP PHASE1:Hg19::chr16:55519605..55519627,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:55519605..55519627,+
|short_description=p@chr16:55519605..55519627,+
|description=CAGE_peak_at_chr16:55519605..55519627,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:55519605..55519627,+ | |||
|coexpression_cluster_id=C351 | |||
|description=CAGE_peak_at_chr16:55519605..55519627,+ | |||
|id=chr16:55519605..55519627,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.27e-34!180;CL:0000057!1.94e-19!75;CL:0000680!4.20e-15!57;CL:0000056!4.20e-15!57;CL:0000355!4.20e-15!57;CL:0000183!2.88e-14!59;CL:0000192!9.38e-14!42;CL:0000514!9.38e-14!42;CL:0000187!1.50e-13!54;CL:0000393!1.32e-11!60;CL:0000211!1.32e-11!60;CL:0000359!2.44e-11!32;CL:0000222!1.07e-09!119;CL:0000048!1.95e-09!430;CL:0002620!3.84e-09!23;CL:0002371!5.47e-09!591;CL:0002334!5.82e-09!12;CL:0000723!7.77e-09!436;CL:0000034!1.34e-08!444;CL:0000144!1.40e-08!625 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.46e-13;12!CL:0002620;1.75e-11;23!CL:0000134;9.47e-09;55!CL:0000048;2.46e-08;58!CL:0002320;2.77e-08;188!CL:0000359;3.42e-08;32!CL:0000723;1.03e-07;61!CL:0000057;1.09e-07;73!CL:0000136;1.28e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.12e-21,76;CL:0000048,5.92e-19,427;CL:0000723,3.67e-18,433;CL:0000034,3.83e-17,441;CL:0002334,3.00e-13,12;CL:0002320,3.21e-12,361;CL:0002620,1.01e-11,23;CL:0000134,1.25e-11,354;CL:0000136,1.21e-09,15;CL:0000219,2.13e-09,386;CL:0000192,3.24e-09,43;CL:0000514,3.24e-09,43;CL:0000680,9.01e-09,58;CL:0000056,9.01e-09,58;CL:0000355,9.01e-09,58;CL:0000359,5.46e-08,32;CL:0000187,3.94e-07,55;CL:0000499,9.23e-07,28 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.07e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.10e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.88e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!8.09e-18!83;UBERON:0002329!8.09e-18!83;UBERON:0003077!8.09e-18!83;UBERON:0003059!8.09e-18!83;UBERON:0007282!8.09e-18!83;UBERON:0009618!8.09e-18!83;UBERON:0007285!8.09e-18!83;UBERON:0000486!6.12e-16!82;UBERON:0004290!9.09e-16!70;UBERON:0002385!8.25e-15!63;UBERON:0001015!8.25e-15!63;UBERON:0000383!8.25e-15!63;UBERON:0001134!1.25e-14!61;UBERON:0002036!1.25e-14!61;UBERON:0003082!1.25e-14!61;UBERON:0001637!7.53e-14!42;UBERON:0003509!7.53e-14!42;UBERON:0004572!7.53e-14!42;UBERON:0004872!1.41e-13!84;UBERON:0001981!6.27e-13!60;UBERON:0007500!6.27e-13!60;UBERON:0004537!6.27e-13!60;UBERON:0006965!6.27e-13!60;UBERON:0005256!7.88e-12!143;UBERON:0004573!2.97e-11!33;UBERON:0004571!2.97e-11!33;UBERON:0002049!1.87e-10!79;UBERON:0007798!1.87e-10!79;UBERON:0002199!2.81e-10!45;UBERON:0002416!2.81e-10!45;UBERON:0000055!1.26e-09!69;UBERON:0003102!2.33e-09!95;UBERON:0003914!7.60e-09!118;UBERON:0001009!1.30e-08!113;UBERON:0004535!1.34e-08!110;UBERON:0002100!1.50e-08!216;UBERON:0000490!6.01e-08!138;UBERON:0002097!7.14e-08!40;UBERON:0000475!3.37e-07!365;UBERON:0000468!6.07e-07!659;UBERON:0000947!7.36e-07!21;UBERON:0010191!7.36e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;8.47e-13;33!UBERON:0004571;8.47e-13;33!UBERON:0001637;2.11e-10;42!UBERON:0003509;2.11e-10;42!UBERON:0004572;2.11e-10;42!UBERON:0001013;2.64e-10;14!UBERON:0004457;6.24e-10;9!UBERON:0000042;6.24e-10;9!UBERON:0002199;7.21e-10;46!UBERON:0002416;7.21e-10;46!UBERON:0003688;6.06e-09;6!UBERON:0002358;6.06e-09;6!UBERON:0003684;6.06e-09;6!UBERON:0001178;6.06e-09;6!UBERON:0002384;6.83e-09;198!UBERON:0000947;2.30e-08;21!UBERON:0010191;2.30e-08;21!UBERON:0002097;4.59e-08;41!UBERON:0003102;7.08e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.17e-14,46;UBERON:0002416,1.17e-14,46;UBERON:0004573,1.59e-13,33;UBERON:0004571,1.59e-13,33;UBERON:0001637,3.03e-13,42;UBERON:0003509,3.03e-13,42;UBERON:0004572,3.03e-13,42;UBERON:0002384,2.29e-12,371;UBERON:0002097,5.90e-11,41;UBERON:0001013,2.33e-10,14;UBERON:0007524,9.82e-10,73;UBERON:0003102,1.13e-09,99;UBERON:0002329,2.41e-09,71;UBERON:0003059,2.41e-09,71;UBERON:0007282,2.41e-09,71;UBERON:0004290,2.41e-09,71;UBERON:0009618,2.41e-09,71;UBERON:0003077,4.36e-09,72;UBERON:0007285,4.36e-09,72;UBERON:0007503,4.66e-09,78;UBERON:0004872,4.91e-09,83;UBERON:0003688,6.06e-09,6;UBERON:0002358,6.06e-09,6;UBERON:0003684,6.06e-09,6;UBERON:0001178,6.06e-09,6;UBERON:0000486,7.58e-09,83;UBERON:0000926,1.14e-08,315;UBERON:0004120,1.14e-08,315;UBERON:0006603,1.14e-08,315;UBERON:0007500,1.53e-08,59;UBERON:0001981,1.53e-08,59;UBERON:0004537,1.53e-08,59;UBERON:0006965,1.53e-08,59;UBERON:0001134,1.63e-08,62;UBERON:0002036,1.63e-08,62;UBERON:0003082,1.63e-08,62;UBERON:0000947,2.45e-08,21;UBERON:0010191,2.45e-08,21;UBERON:0002385,5.31e-08,64;UBERON:0001015,5.31e-08,64;UBERON:0000383,5.31e-08,64;UBERON:0005256,2.10e-07,122;UBERON:0004457,6.73e-07,12;UBERON:0000042,6.73e-07,12 | |||
|phase1_expression=8.3572054464456,7.92171938396638,5.49722175974288,11.0080628188443,16.0905993993824,3.48935409640147,5.06599756336621,3.15859936713415,3.3954131665979,0,0.697801167972428,0,0,0.74259811776028,0.662794751455832,9.41255205032485,6.02694528023977,9.49403117503585,3.41552959153355,0.246242116153576,0.408001382488506,0.626909442956176,0.85870796139317,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0.50133791063589,1.73815822752988,7.15757352345989,6.8128881842369,0,0.443458794925128,0.43917392846563,0.196468613246569,0,0,0,0,0,0,0,0,0,1.72046919021225,1.04142150482278,1.69592382577203,0.838998872419812,1.10047216776027,0.208994966536811,0,0,0,0.402829317109147,0,0.732186172644509,0,3.24056779152704,0.446498641420399,0.22452937262617,0.225222960966644,0,0,0.732806975721629,0,0,0,0.993943903390637,2.65924074495618,2.38336525463794,6.59724227722272,2.12801029319014,1.12135520028461,1.06748995729705,1.97334038733728,0.622422070799533,0.538842688278752,0.653847612453835,0.454072282934794,1.15235184896,0,1.87296046098192,0.570471821544449,1.49448680551801,0,0.161872944368132,0.140450806702248,0.204154171254893,0.368502951935304,1.23990937410919,10.6920257155385,9.1488763833066,0,0,0.168336113954066,0.625592599359821,0.277064115484183,0.877955241761676,3.98434134538726,5.25833206173089,0.340296549480063,1.61450672119976,1.92201649936711,3.81477422087211,3.30100205692843,2.57631323096097,2.57640540045629,2.41951913231067,5.06328996723799,2.53336213419116,2.01947019395292,3.58994604704967,3.39456719319505,4.9701342952326,1.41052937518696,1.18692414617341,0.193260853163297,0.272746120590835,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0.252320850875628,0,4.69348596989448,4.5026865673502,0,1.85747171212792,1.44375896333917,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.8231480226628,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0,0,0.325808305310325,0,0,0.115930404975077,0.234817388471643,0,0.462985512576611,0,0,0,0,0.234004265139238,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0.288239906833923,0.12624243342638,0.190493682876507,0,0,1.71072446022705,0.411309970813294,0,0.571652865261156,0,0.87192013766656,0,3.36106460970222,3.57656445851882,0,5.31876233169741,4.16029747645464,0,0,0,0.714889968290738,5.42621605391443,0.823240336780769,0,0,0.791951872933429,1.80863626235752,1.74306691720059,0.099972991182057,1.2162378064119,0,0,0.239624855491583,0,0,1.88215698667853,5.54786070886035,2.14873155887875,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0.49076596687656,1.00034104211935,0.542530047399471,1.45579603071565,3.7470087647404,2.52323864054295,1.40569697991256,1.20378439891088,6.82222512167955,4.1389228517002,0.664225598535437,0.921845842708516,2.08520674723399,1.56640925970192,3.43143423810856,0,0,0,0,0,0,7.69134204238208,4.910783145218,16.2782854771183,5.12556597022804,3.58195074346692,7.23842645146234,1.48418066444991,1.3878872442239,4.08391968220192,1.23190734020714,3.11552657510173,2.78904908303902,0,1.00253235151642,0,2.06666006696292,2.91345868810747,1.83574180943194,0,0.0770153371044148,0,0,0.422206515571503,0,0.170093705276516,0.215915916102139,4.62681758070868,0,1.00337954770971,0,0,0,0,0,0,0,0.976135183992909,0.103041011647722,0,0.247528499761764,0,1.95018073810956,1.6068392984416,1.83674364755032,0.154048617114644,0.15350367472613,0.413509717453592,0.644521469209642,0.580066775656914,0.255679882248303,0.712256285173899,0.495854746082934,0.384380134730212,0,0,1.39453664789186,5.66662224295152,0,0.308033580176089,0.532306030317022,0.869932992075073,2.40921484835096,0.286249773483982,0.744316738719335,0.632758849437452,0.953150969619124,1.27948895655667,0,0.318203247925937,2.35484592059769,1.79872457583315,1.92175920815238,0.589062011728432,1.2130948894399,3.17020642346017,2.10629228119491,0,1.94970791705028,1.05650146756755,0.545999645631943,2.82810863907426,3.39024349860728,1.10273068709225,1.32687795048244,1.75380354101505,1.15755106853338,0.655894752046633,0.811641507850816,0.6196469961995,1.12678241012897,0,0.196498082026242,2.49669736036875,1.06428319221179,5.48879851773927,11.8546161465565,0,0,0.0962221127255121,0,0,0.753150406214233,0.43050537267123,0,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0.561594356226918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0,0,0,1.02268682502155,0,5.28767299025073,0,0,0,0.295930216910801,0,0,0,0,0,0,0,1.44999915086959,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538651809526579,2.62066728448103,0,1.25660702173681,0,0.31900115973192,2.28993983504656,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0,0,0,0,0,3.21031058919516,0,0,0,0,0.789168805698781,0,0.30607276163049,0.442306057399416,0,0,0,0,0,0,0,0.277349346026277,0,0,0,2.62090002363045,0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| ||
|short_description=p@chr16:55519605..55519627,+ | |||
}} | }} |
Latest revision as of 09:51, 25 July 2015
Short description: | p@chr16:55519605..55519627, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:55519605..55519627, + |
Coexpression cluster: | C351_Fibroblast_Smooth_mesenchymal_Adipocyte_tenocyte_Synoviocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.12e-21 | 76 |
multi fate stem cell | 5.92e-19 | 427 |
somatic stem cell | 3.67e-18 | 433 |
stem cell | 3.83e-17 | 441 |
preadipocyte | 3.00e-13 | 12 |
connective tissue cell | 3.21e-12 | 361 |
skin fibroblast | 1.01e-11 | 23 |
mesenchymal cell | 1.25e-11 | 354 |
fat cell | 1.21e-09 | 15 |
motile cell | 2.13e-09 | 386 |
smooth muscle cell | 3.24e-09 | 43 |
smooth muscle myoblast | 3.24e-09 | 43 |
muscle precursor cell | 9.01e-09 | 58 |
myoblast | 9.01e-09 | 58 |
multi-potent skeletal muscle stem cell | 9.01e-09 | 58 |
vascular associated smooth muscle cell | 5.46e-08 | 32 |
muscle cell | 3.94e-07 | 55 |
stromal cell | 9.23e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.88e-09 | 14 |