FFCP PHASE1:Hg19::chr16:49889987..49889999,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr16:49889987..49889999,-
|short_description=p@chr16:49889987..49889999,-
|description=CAGE_peak_at_chr16:49889987..49889999,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:49889987..49889999,- | |||
|description=CAGE_peak_at_chr16:49889987..49889999,- | |||
|id=chr16:49889987..49889999,- | |||
|ontology_enrichment_celltype=CL:0000047!1.15e-08!8;CL:0000133!2.05e-08!59;CL:0002319!3.45e-08!25;CL:0002322!5.09e-08!5;CL:0000128!2.72e-07!7;CL:0000126!2.72e-07!7;CL:0000127!2.72e-07!7;CL:0002453!2.72e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.92e-22;5!CL:0002321;3.69e-17;15!CL:0002603;1.38e-14;3!CL:0000064;1.84e-13;3!CL:0000067;1.84e-13;3!CL:0005012;1.84e-13;3!CL:0002304;1.84e-13;3!CL:0000540;3.15e-12;6!CL:0000404;3.15e-12;6!CL:0002319;7.31e-12;25!CL:0000039;2.34e-10;7!CL:0000586;2.34e-10;7!CL:0000047;1.52e-09;2!CL:0002549;3.08e-09;2!CL:0000333;5.39e-08;5!CL:0000710;2.45e-07;20!CL:0000075;4.66e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.17e-22,5;CL:0000047,1.88e-19,8;CL:0000133,4.65e-19,59;CL:0000221,5.81e-15,72;CL:0002603,1.13e-14,3;CL:0000064,8.68e-14,3;CL:0000067,8.68e-14,3;CL:0005012,8.68e-14,3;CL:0002304,8.68e-14,3;CL:0000540,3.34e-12,6;CL:0000031,3.34e-12,6;CL:0000404,3.34e-12,6;CL:0002319,6.67e-12,25;CL:0000039,2.88e-10,7;CL:0000586,2.88e-10,7;CL:0002549,3.36e-09,2;CL:0000710,2.10e-07,20;CL:0000075,4.29e-07,27 | |||
|ontology_enrichment_development_v019=CL:0000031;3.15e-12;6!UBERON:0009117;4.61e-11;10!UBERON:0005564;4.61e-11;10!CL:0000133;2.16e-09;59 | |||
|ontology_enrichment_disease=DOID:3095!7.61e-12!22;DOID:2994!7.61e-12!22;DOID:171!3.82e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:3095;9.52e-31;22!DOID:2994;9.52e-31;22!DOID:171;1.10e-14;10!DOID:169;9.87e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.58e-30,22;DOID:2994,1.58e-30,22;DOID:171,1.64e-14,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.77e-12!94;UBERON:0001016!3.77e-12!94;UBERON:0001017!3.54e-11!82;UBERON:0005743!6.64e-11!86;UBERON:0002346!6.60e-10!90;UBERON:0000924!1.37e-09!173;UBERON:0006601!1.37e-09!173;UBERON:0004121!8.18e-08!169;UBERON:0007023!1.09e-07!115;UBERON:0003075!1.14e-07!86;UBERON:0007284!1.14e-07!86;UBERON:0000922!5.25e-07!612;UBERON:0003135!7.16e-07!11;UBERON:0002200!7.60e-07!11;UBERON:0006876!7.60e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.25e-17;49!UBERON:0001778;1.84e-13;3!UBERON:0001775;1.84e-13;3!UBERON:0002346;2.55e-10;4!UBERON:0000923;2.55e-10;4!UBERON:0010316;2.55e-10;4!UBERON:0005291;2.55e-10;4!UBERON:0000488;3.24e-10;4!UBERON:0006876;2.11e-09;11!UBERON:0005629;3.08e-09;2!UBERON:0005358;3.08e-09;2!UBERON:0001886;3.08e-09;2!UBERON:0004086;3.08e-09;2!UBERON:0005282;3.08e-09;2!UBERON:0005281;3.08e-09;2!UBERON:0000473;4.55e-09;8!UBERON:0002050;2.42e-08;5!UBERON:0005423;2.42e-08;5!UBERON:0000013;5.39e-08;5!UBERON:0002410;5.39e-08;5!UBERON:0002037;1.70e-07;6!UBERON:0002203;5.96e-07;6!UBERON:0001768;5.96e-07;6!UBERON:0002200;5.96e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,8.68e-14,3;UBERON:0001775,8.68e-14,3;UBERON:0001016,6.86e-11,89;UBERON:0000488,1.85e-10,4;UBERON:0004121,1.55e-09,171;UBERON:0000924,1.55e-09,171;UBERON:0006601,1.55e-09,171;UBERON:0006876,1.59e-09,11;UBERON:0005629,3.36e-09,2;UBERON:0005358,3.36e-09,2;UBERON:0001886,3.36e-09,2;UBERON:0004086,3.36e-09,2;UBERON:0005282,3.36e-09,2;UBERON:0005281,3.36e-09,2;UBERON:0000473,5.46e-09,8;UBERON:0001017,2.25e-08,81;UBERON:0000013,6.27e-08,5;UBERON:0002410,6.27e-08,5;UBERON:0002037,1.55e-07,6;UBERON:0006215,1.55e-07,6;UBERON:0002203,4.14e-07,6;UBERON:0001768,4.14e-07,6;UBERON:0002200,4.14e-07,6 | |||
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| ||
|short_description=p@chr16:49889987..49889999,- | |||
}} | }} |
Latest revision as of 09:21, 25 July 2015
Short description: | p@chr16:49889987..49889999, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:49889987..49889999, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.17e-22 | 5 |
neuronal stem cell | 1.88e-19 | 8 |
neurectodermal cell | 4.65e-19 | 59 |
ectodermal cell | 5.81e-15 | 72 |
astrocyte of the cerebellum | 1.13e-14 | 3 |
ciliated cell | 8.68e-14 | 3 |
ciliated epithelial cell | 8.68e-14 | 3 |
multi-ciliated epithelial cell | 8.68e-14 | 3 |
non-pigmented ciliary epithelial cell | 8.68e-14 | 3 |
neuron | 3.34e-12 | 6 |
neuroblast | 3.34e-12 | 6 |
electrically signaling cell | 3.34e-12 | 6 |
neural cell | 6.67e-12 | 25 |
germ line cell | 2.88e-10 | 7 |
germ cell | 2.88e-10 | 7 |
fibroblast of choroid plexus | 3.36e-09 | 2 |
neurecto-epithelial cell | 2.10e-07 | 20 |
columnar/cuboidal epithelial cell | 4.29e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 8.68e-14 | 3 |
ciliary body | 8.68e-14 | 3 |
nervous system | 6.86e-11 | 89 |
atypical epithelium | 1.85e-10 | 4 |
ectoderm-derived structure | 1.55e-09 | 171 |
ectoderm | 1.55e-09 | 171 |
presumptive ectoderm | 1.55e-09 | 171 |
vasculature of organ | 1.59e-09 | 11 |
vascular plexus | 3.36e-09 | 2 |
ventricle of nervous system | 3.36e-09 | 2 |
choroid plexus | 3.36e-09 | 2 |
brain ventricle | 3.36e-09 | 2 |
ventricular system of brain | 3.36e-09 | 2 |
ventricular system of central nervous system | 3.36e-09 | 2 |
testis | 5.46e-09 | 8 |
central nervous system | 2.25e-08 | 81 |
sympathetic nervous system | 6.27e-08 | 5 |
autonomic nervous system | 6.27e-08 | 5 |
cerebellum | 1.55e-07 | 6 |
rhombic lip | 1.55e-07 | 6 |
vasculature of eye | 4.14e-07 | 6 |
uvea | 4.14e-07 | 6 |
vasculature of head | 4.14e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.58e-30 | 22 |
germ cell cancer | 1.58e-30 | 22 |
neuroectodermal tumor | 1.64e-14 | 10 |