FFCP PHASE1:Hg19::chr6:10556030..10556063,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2651 | |EntrezGene=2651 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4204 | |HGNC=4204 | ||
|TSSclassifier=strong | |||
|UniProt=Q06430,Q8NFS9 | |UniProt=Q06430,Q8NFS9 | ||
|association_with_transcript=81bp_to_NM_001491,uc003mzd.2_5end | |association_with_transcript=81bp_to_NM_001491,uc003mzd.2_5end | ||
|cluster_id=chr6:10556030..10556063,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_10_at_GCNT2_5end | |description=CAGE_peak_10_at_GCNT2_5end | ||
|id=chr6:10556030..10556063,+ | |id=chr6:10556030..10556063,+ | ||
|ontology_enrichment_celltype=CL:0002322!3.91e-19!5;CL:0000540!2.31e-10!6;CL:0000031!2.31e-10!6;CL:0000404!2.31e-10!6;CL:0000039!7.97e-09!7;CL:0000586!7.97e-09!7;CL:0000047!9.25e-08!8 | |ontology_enrichment_celltype=CL:0002322!3.91e-19!5;CL:0000540!2.31e-10!6;CL:0000031!2.31e-10!6;CL:0000404!2.31e-10!6;CL:0000039!7.97e-09!7;CL:0000586!7.97e-09!7;CL:0000047!9.25e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.13e-55;5!CL:0000039;1.81e-25;7!CL:0000586;1.81e-25;7!CL:0002321;1.31e-18;15!CL:0000540;9.98e-18;6!CL:0000404;9.98e-18;6!CL:0000148;1.20e-10;10!CL:0000147;9.45e-08;14!CL:0002319;6.95e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.13e-55,5;CL:0000039,1.75e-25,7;CL:0000586,1.75e-25,7;CL:0000540,1.03e-17,6;CL:0000031,1.03e-17,6;CL:0000404,1.03e-17,6;CL:0000047,1.94e-13,8;CL:0000148,1.16e-10,10;CL:0000541,1.16e-10,10;CL:0000133,2.34e-08,59;CL:0000147,9.24e-08,14;CL:0002319,7.01e-07,25;CL:0000221,9.10e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.14e-27;10!UBERON:0005564;2.14e-27;10!CL:0000031;9.98e-18;6 | |||
|ontology_enrichment_disease=DOID:3095!2.96e-07!22;DOID:2994!2.96e-07!22 | |ontology_enrichment_disease=DOID:3095!2.96e-07!22;DOID:2994!2.96e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.26e-17;22!DOID:2994;1.26e-17;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.27e-17,22;DOID:2994,1.27e-17,22 | |||
|ontology_enrichment_uberon=UBERON:0001950!1.45e-20!20;UBERON:0002619!1.52e-18!22;UBERON:0000956!4.22e-16!25;UBERON:0000203!4.22e-16!25;UBERON:0001871!6.74e-15!7;UBERON:0005743!9.83e-15!86;UBERON:0001869!2.95e-14!32;UBERON:0001017!3.18e-14!82;UBERON:0000073!3.33e-14!94;UBERON:0001016!3.33e-14!94;UBERON:0002791!9.42e-14!33;UBERON:0002020!2.81e-13!34;UBERON:0003528!2.81e-13!34;UBERON:0001893!2.81e-13!34;UBERON:0002780!2.25e-12!41;UBERON:0001890!2.25e-12!41;UBERON:0006240!2.25e-12!41;UBERON:0003080!5.15e-12!42;UBERON:0000955!5.94e-11!69;UBERON:0006238!5.94e-11!69;UBERON:0001049!6.76e-11!57;UBERON:0005068!6.76e-11!57;UBERON:0006241!6.76e-11!57;UBERON:0007135!6.76e-11!57;UBERON:0002771!1.08e-10!3;UBERON:0002616!2.06e-10!59;UBERON:0003056!6.25e-10!61;UBERON:0000200!2.50e-09!6;UBERON:0003075!3.49e-09!86;UBERON:0007284!3.49e-09!86;UBERON:0004121!1.17e-08!169;UBERON:0002346!1.36e-08!90;UBERON:0000924!2.57e-08!173;UBERON:0006601!2.57e-08!173;UBERON:0003135!2.97e-08!11;UBERON:0000473!1.03e-07!8;UBERON:0001870!1.12e-07!2;UBERON:0000033!1.36e-07!123;UBERON:0000153!5.00e-07!129;UBERON:0007811!5.00e-07!129 | |ontology_enrichment_uberon=UBERON:0001950!1.45e-20!20;UBERON:0002619!1.52e-18!22;UBERON:0000956!4.22e-16!25;UBERON:0000203!4.22e-16!25;UBERON:0001871!6.74e-15!7;UBERON:0005743!9.83e-15!86;UBERON:0001869!2.95e-14!32;UBERON:0001017!3.18e-14!82;UBERON:0000073!3.33e-14!94;UBERON:0001016!3.33e-14!94;UBERON:0002791!9.42e-14!33;UBERON:0002020!2.81e-13!34;UBERON:0003528!2.81e-13!34;UBERON:0001893!2.81e-13!34;UBERON:0002780!2.25e-12!41;UBERON:0001890!2.25e-12!41;UBERON:0006240!2.25e-12!41;UBERON:0003080!5.15e-12!42;UBERON:0000955!5.94e-11!69;UBERON:0006238!5.94e-11!69;UBERON:0001049!6.76e-11!57;UBERON:0005068!6.76e-11!57;UBERON:0006241!6.76e-11!57;UBERON:0007135!6.76e-11!57;UBERON:0002771!1.08e-10!3;UBERON:0002616!2.06e-10!59;UBERON:0003056!6.25e-10!61;UBERON:0000200!2.50e-09!6;UBERON:0003075!3.49e-09!86;UBERON:0007284!3.49e-09!86;UBERON:0004121!1.17e-08!169;UBERON:0002346!1.36e-08!90;UBERON:0000924!2.57e-08!173;UBERON:0006601!2.57e-08!173;UBERON:0003135!2.97e-08!11;UBERON:0000473!1.03e-07!8;UBERON:0001870!1.12e-07!2;UBERON:0000033!1.36e-07!123;UBERON:0000153!5.00e-07!129;UBERON:0007811!5.00e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.48e-22;8!UBERON:0003135;2.49e-16;11!UBERON:0000922;4.46e-13;49!UBERON:0000991;4.77e-13;21!UBERON:0003101;2.80e-08;22!UBERON:0000079;2.80e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.41e-22,8;UBERON:0003135,2.44e-16,11;UBERON:0000991,4.77e-13,21;UBERON:0009196,4.77e-13,21;UBERON:0009117,4.77e-13,21;UBERON:0005564,4.77e-13,21;UBERON:0004176,1.88e-12,22;UBERON:0003101,2.77e-08,22;UBERON:0000079,2.77e-08,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.9301348010505,9.14455401418248,12.6651397727775,7.98190123618352,9.33587148239825,9.48941133597158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,1.99613798001194,0,0,0,0,0,0,1.03423011972439,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3779924318065,19.8056788700017,20.3565765634301,0,0,0.0607495566580247,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0.124192805882767,0,0,0,0,0,0,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.756215088665154,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0.198950775161368,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.135982980381829,0.436350690340377,0.5290268405154,0,0,0,2.64949492153666,4.26135730658413,0,7.13921808193872,4.80991329478009,2.75684698604535,16.045282514712,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.9301348010505,9.14455401418248,12.6651397727775,7.98190123618352,9.33587148239825,9.48941133597158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,1.99613798001194,0,0,0,0,0,0,1.03423011972439,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3779924318065,19.8056788700017,20.3565765634301,0,0,0.0607495566580247,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0.124192805882767,0,0,0,0,0,0,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.756215088665154,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0.198950775161368,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.135982980381829,0.436350690340377,0.5290268405154,0,0,0,2.64949492153666,4.26135730658413,0,7.13921808193872,4.80991329478009,2.75684698604535,16.045282514712,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p10@GCNT2 | |short_description=p10@GCNT2 | ||
}} | }} |
Latest revision as of 14:01, 19 September 2015
Short description: | p10@GCNT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_GCNT2_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 81bp_to_NM_001491, uc003mzd.2_5end |
EntrezGene: | GCNT2 |
HGNC: | 4204 |
UniProt: | Q06430Q8NFS9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.13e-55 | 5 |
germ line cell | 1.75e-25 | 7 |
germ cell | 1.75e-25 | 7 |
neuron | 1.03e-17 | 6 |
neuroblast | 1.03e-17 | 6 |
electrically signaling cell | 1.03e-17 | 6 |
neuronal stem cell | 1.94e-13 | 8 |
melanocyte | 1.16e-10 | 10 |
melanoblast | 1.16e-10 | 10 |
neurectodermal cell | 2.34e-08 | 59 |
pigment cell | 9.24e-08 | 14 |
neural cell | 7.01e-07 | 25 |
ectodermal cell | 9.10e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
testis | 2.41e-22 | 8 |
male reproductive organ | 2.44e-16 | 11 |
gonad | 4.77e-13 | 21 |
indifferent external genitalia | 4.77e-13 | 21 |
indifferent gonad | 4.77e-13 | 21 |
gonad primordium | 4.77e-13 | 21 |
external genitalia | 1.88e-12 | 22 |
male organism | 2.77e-08 | 22 |
male reproductive system | 2.77e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.27e-17 | 22 |
germ cell cancer | 1.27e-17 | 22 |