FFCP PHASE1:Hg19::chr5:139260776..139260787,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:139260776..139260787,- | |||
|description=CAGE_peak_at_chr5:139260776..139260787,- | |description=CAGE_peak_at_chr5:139260776..139260787,- | ||
|id=chr5:139260776..139260787,- | |id=chr5:139260776..139260787,- | ||
|ontology_enrichment_celltype=CL:0002586!4.30e-11!3;CL:0000149!2.09e-08!4 | |ontology_enrichment_celltype=CL:0002586!4.30e-11!3;CL:0000149!2.09e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0002586;2.45e-12;3!CL:0000149;1.38e-09;4!CL:0002537;6.33e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.85e-12,3;CL:0000149,1.12e-09,4;CL:0002537,7.49e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.45e-12;3 | |||
|ontology_enrichment_disease=DOID:1909!9.58e-08!2 | |ontology_enrichment_disease=DOID:1909!9.58e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:4362;6.33e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,5.73e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.37e-19!115;UBERON:0000966!1.83e-11!5;UBERON:0005388!1.83e-11!5;UBERON:0001802!1.83e-11!5;UBERON:0001781!4.30e-11!3;UBERON:0001782!4.30e-11!3;UBERON:0005424!4.30e-11!3;UBERON:0001008!1.01e-10!45;UBERON:0006947!2.05e-10!3;UBERON:0004054!2.05e-10!3;UBERON:0006554!2.39e-09!44;UBERON:0005156!1.56e-08!59;UBERON:0000990!1.56e-08!59;UBERON:0003101!6.38e-08!22;UBERON:0000079!6.38e-08!22;UBERON:0005904!6.62e-08!4;UBERON:0003056!6.92e-08!61;UBERON:0005743!4.28e-07!86;UBERON:0004175!5.06e-07!25;UBERON:0000073!5.48e-07!94;UBERON:0001016!5.48e-07!94;UBERON:0003135!5.86e-07!11;UBERON:0003133!6.42e-07!48 | |ontology_enrichment_uberon=UBERON:0007023!2.37e-19!115;UBERON:0000966!1.83e-11!5;UBERON:0005388!1.83e-11!5;UBERON:0001802!1.83e-11!5;UBERON:0001781!4.30e-11!3;UBERON:0001782!4.30e-11!3;UBERON:0005424!4.30e-11!3;UBERON:0001008!1.01e-10!45;UBERON:0006947!2.05e-10!3;UBERON:0004054!2.05e-10!3;UBERON:0006554!2.39e-09!44;UBERON:0005156!1.56e-08!59;UBERON:0000990!1.56e-08!59;UBERON:0003101!6.38e-08!22;UBERON:0000079!6.38e-08!22;UBERON:0005904!6.62e-08!4;UBERON:0003056!6.92e-08!61;UBERON:0005743!4.28e-07!86;UBERON:0004175!5.06e-07!25;UBERON:0000073!5.48e-07!94;UBERON:0001016!5.48e-07!94;UBERON:0003135!5.86e-07!11;UBERON:0003133!6.42e-07!48 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.72e-27;5!UBERON:0005388;2.72e-27;5!UBERON:0001802;2.72e-27;5!UBERON:0001781;2.45e-12;3!UBERON:0001782;2.45e-12;3!UBERON:0000019;5.93e-08;19!UBERON:0000047;5.93e-08;19!UBERON:0004088;5.93e-08;19!UBERON:0010230;5.93e-08;19!UBERON:0002021;6.33e-08;5!UBERON:0000970;1.33e-07;20!UBERON:0002104;2.77e-07;21!UBERON:0001456;2.77e-07;21!UBERON:0000002;8.25e-07;6!UBERON:0001560;8.25e-07;6!UBERON:0000020;9.95e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.34e-23,6;UBERON:0005388,4.34e-23,6;UBERON:0001802,4.34e-23,6;UBERON:0001782,1.85e-12,3;UBERON:0005424,1.85e-12,3;UBERON:0001781,1.12e-09,4;UBERON:0002021,7.01e-08,5;UBERON:0000019,1.21e-07,20;UBERON:0000047,1.21e-07,20;UBERON:0010312,1.21e-07,20;UBERON:0004088,1.21e-07,20;UBERON:0010230,1.21e-07,20;UBERON:0003072,1.21e-07,20;UBERON:0004128,1.21e-07,20;UBERON:0003071,1.21e-07,20;UBERON:0000970,2.52e-07,21;UBERON:0002104,2.52e-07,21;UBERON:0001456,4.94e-07,22;UBERON:0000002,7.58e-07,6;UBERON:0001560,7.58e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0.512900250232778,1.96808787419823,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0.43050537267123,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,1.96089234334182,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.786818822024972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.943225830597996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909894705249887,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.754773679776773,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0.336283722218824,0,0,0.0887023701626388,0,0,0,0.0657727735628491,0,0,0.78493092850514,0,0,0,0,0,1.85839014859306,0,0,0.869291361512897,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0.218559560503957,0,0.490296643507811,0,0,0,0,0,0.281951753939561,0.386747327841463,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,1.64708051314868,0,0,0.0918948995348449,0,0.227336094654718,0,0.829169439458779,0,0,0,0,0,0,0.0636471582781649,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0.512900250232778,1.96808787419823,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0.43050537267123,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,1.96089234334182,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.786818822024972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.943225830597996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909894705249887,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.754773679776773,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0.336283722218824,0,0,0.0887023701626388,0,0,0,0.0657727735628491,0,0,0.78493092850514,0,0,0,0,0,1.85839014859306,0,0,0.869291361512897,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0.218559560503957,0,0.490296643507811,0,0,0,0,0,0.281951753939561,0.386747327841463,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,1.64708051314868,0,0,0.0918948995348449,0,0.227336094654718,0,0.829169439458779,0,0,0,0,0,0,0.0636471582781649,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0.665756774185513,0,0 | ||
|short_description=p@chr5:139260776..139260787,- | |short_description=p@chr5:139260776..139260787,- | ||
}} | }} |
Latest revision as of 10:26, 30 July 2015
Short description: | p@chr5:139260776..139260787, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:139260776..139260787, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.85e-12 | 3 |
visual pigment cell | 1.12e-09 | 4 |
amnion mesenchymal stem cell | 7.49e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
retina | 4.34e-23 | 6 |
photoreceptor array | 4.34e-23 | 6 |
posterior segment of eyeball | 4.34e-23 | 6 |
pigmented layer of retina | 1.85e-12 | 3 |
presumptive retinal pigmented epithelium | 1.85e-12 | 3 |
layer of retina | 1.12e-09 | 4 |
occipital lobe | 7.01e-08 | 5 |
camera-type eye | 1.21e-07 | 20 |
simple eye | 1.21e-07 | 20 |
immature eye | 1.21e-07 | 20 |
ocular region | 1.21e-07 | 20 |
eyeball of camera-type eye | 1.21e-07 | 20 |
optic cup | 1.21e-07 | 20 |
optic vesicle | 1.21e-07 | 20 |
eye primordium | 1.21e-07 | 20 |
eye | 2.52e-07 | 21 |
visual system | 2.52e-07 | 21 |
face | 4.94e-07 | 22 |
uterine cervix | 7.58e-07 | 6 |
neck of organ | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 5.73e-08 | 5 |