FFCP PHASE1:Hg19::chr4:42154395..42154413,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389206 | |EntrezGene=389206 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=23815 | |HGNC=23815 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_uc011byy.1_5end | |association_with_transcript=-2bp_to_uc011byy.1_5end | ||
|cluster_id=chr4:42154395..42154413,- | |||
|coexpression_cluster_id=C4414 | |||
|description=CAGE_peak_2_at_BEND4_5end | |description=CAGE_peak_2_at_BEND4_5end | ||
|id=chr4:42154395..42154413,- | |id=chr4:42154395..42154413,- | ||
|ontology_enrichment_celltype=CL:0000236!5.13e-15!14;CL:0000945!5.45e-13!24;CL:0000826!5.45e-13!24;CL:0002322!4.65e-08!5 | |ontology_enrichment_celltype=CL:0000236!5.13e-15!14;CL:0000945!5.45e-13!24;CL:0000826!5.45e-13!24;CL:0002322!4.65e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000236;2.48e-25;13!CL:0000945;1.01e-21;24!CL:0002322;1.62e-18;5!CL:0002321;4.50e-11;15!CL:0000039;1.35e-08;7!CL:0000586;1.35e-08;7!CL:0000542;1.02e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,2.74e-23,14;CL:0000945,1.15e-21,24;CL:0000826,1.15e-21,24;CL:0002322,1.26e-18,5;CL:0000542,2.46e-11,53;CL:0000051,2.46e-11,53;CL:0000838,5.75e-10,52;CL:0000039,1.48e-08,7;CL:0000586,1.48e-08,7;CL:0000047,8.48e-08,8;CL:0002032,9.52e-07,161;CL:0000837,9.52e-07,161 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.42e-18;10!UBERON:0005564;8.42e-18;10!CL:0000051;1.02e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;2.52e-09;22!DOID:2994;2.52e-09;22!DOID:74;5.24e-08;2!DOID:1240;9.89e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.30e-10,51;DOID:0060083,1.30e-10,51;DOID:3095,2.45e-09,22;DOID:2994,2.45e-09,22;DOID:1240,4.37e-09,39;DOID:74,7.90e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.85e-10!94;UBERON:0001016!1.85e-10!94;UBERON:0005743!2.19e-09!86;UBERON:0001017!5.56e-09!82;UBERON:0000956!4.39e-07!25;UBERON:0000203!4.39e-07!25 | |ontology_enrichment_uberon=UBERON:0000073!1.85e-10!94;UBERON:0001016!1.85e-10!94;UBERON:0005743!2.19e-09!86;UBERON:0001017!5.56e-09!82;UBERON:0000956!4.39e-07!25;UBERON:0000203!4.39e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.60e-16;8!UBERON:0003135;8.05e-12;11!UBERON:0000991;6.56e-08;21!UBERON:0003101;2.53e-07;22!UBERON:0000079;2.53e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.79e-16,8;UBERON:0003135,8.72e-12,11;UBERON:0000991,6.91e-08,21;UBERON:0009196,6.91e-08,21;UBERON:0009117,6.91e-08,21;UBERON:0005564,6.91e-08,21;UBERON:0004176,1.76e-07,22;UBERON:0003101,2.90e-07,22;UBERON:0000079,2.90e-07,22 | |||
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| ||
|short_description=p2@BEND4 | |short_description=p2@BEND4 | ||
}} | }} |
Latest revision as of 20:11, 17 September 2015
Short description: | p2@BEND4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_BEND4_5end |
Coexpression cluster: | C4414_chronic_smallcell_neuroblastoma_testis_iPS_testicular_acute |
Association with transcript: | -2bp_to_uc011byy.1_5end |
EntrezGene: | BEND4 |
HGNC: | 23815 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 2.74e-23 | 14 |
lymphocyte of B lineage | 1.15e-21 | 24 |
pro-B cell | 1.15e-21 | 24 |
embryonic stem cell | 1.26e-18 | 5 |
lymphocyte | 2.46e-11 | 53 |
common lymphoid progenitor | 2.46e-11 | 53 |
lymphoid lineage restricted progenitor cell | 5.75e-10 | 52 |
germ line cell | 1.48e-08 | 7 |
germ cell | 1.48e-08 | 7 |
neuronal stem cell | 8.48e-08 | 8 |
hematopoietic oligopotent progenitor cell | 9.52e-07 | 161 |
hematopoietic multipotent progenitor cell | 9.52e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
testis | 1.79e-16 | 8 |
male reproductive organ | 8.72e-12 | 11 |
gonad | 6.91e-08 | 21 |
indifferent external genitalia | 6.91e-08 | 21 |
indifferent gonad | 6.91e-08 | 21 |
gonad primordium | 6.91e-08 | 21 |
external genitalia | 1.76e-07 | 22 |
male organism | 2.90e-07 | 22 |
male reproductive system | 2.90e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.30e-10 | 51 |
immune system cancer | 1.30e-10 | 51 |
germ cell and embryonal cancer | 2.45e-09 | 22 |
germ cell cancer | 2.45e-09 | 22 |
leukemia | 4.37e-09 | 39 |
hematopoietic system disease | 7.90e-08 | 2 |