FFCP PHASE1:Hg19::chr4:177714098..177714111,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7424 | |EntrezGene=7424 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12682 | |HGNC=12682 | ||
|TSSclassifier=strong | |||
|UniProt=P49767 | |UniProt=P49767 | ||
|association_with_transcript=-203bp_to_NM_005429,uc003ius.1_5end | |association_with_transcript=-203bp_to_NM_005429,uc003ius.1_5end | ||
|cluster_id=chr4:177714098..177714111,- | |||
|coexpression_cluster_id=C2788 | |||
|description=CAGE_peak_3_at_VEGFC_5end | |description=CAGE_peak_3_at_VEGFC_5end | ||
|id=chr4:177714098..177714111,- | |id=chr4:177714098..177714111,- | ||
|ontology_enrichment_celltype=CL:0000055!2.28e-37!180;CL:0000057!1.81e-24!75;CL:0000222!5.15e-18!119;CL:0000220!5.52e-16!246;CL:0000680!1.12e-15!57;CL:0000056!1.12e-15!57;CL:0000355!1.12e-15!57;CL:0002321!1.33e-15!248;CL:0000187!4.61e-14!54;CL:0000183!1.63e-13!59;CL:0000192!5.70e-13!42;CL:0000514!5.70e-13!42;CL:0000359!5.82e-11!32;CL:0002620!9.23e-11!23;CL:0000393!1.81e-10!60;CL:0000211!1.81e-10!60;CL:0002371!1.63e-08!591;CL:0000144!5.52e-08!625;CL:0002334!2.65e-07!12 | |ontology_enrichment_celltype=CL:0000055!2.28e-37!180;CL:0000057!1.81e-24!75;CL:0000222!5.15e-18!119;CL:0000220!5.52e-16!246;CL:0000680!1.12e-15!57;CL:0000056!1.12e-15!57;CL:0000355!1.12e-15!57;CL:0002321!1.33e-15!248;CL:0000187!4.61e-14!54;CL:0000183!1.63e-13!59;CL:0000192!5.70e-13!42;CL:0000514!5.70e-13!42;CL:0000359!5.82e-11!32;CL:0002620!9.23e-11!23;CL:0000393!1.81e-10!60;CL:0000211!1.81e-10!60;CL:0002371!1.63e-08!591;CL:0000144!5.52e-08!625;CL:0002334!2.65e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.33e-12;23!CL:0000359;5.14e-12;32!CL:0000057;2.02e-11;73!CL:0000192;1.07e-10;43!CL:0002334;8.43e-09;12!CL:0002320;2.16e-08;188!CL:0000187;1.66e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.10e-27,76;CL:0000680,7.16e-15,58;CL:0000056,7.16e-15,58;CL:0000355,7.16e-15,58;CL:0000222,1.06e-14,121;CL:0000192,8.51e-14,43;CL:0000514,8.51e-14,43;CL:0000187,5.01e-13,55;CL:0002620,1.36e-12,23;CL:0000359,1.41e-12,32;CL:0002321,1.58e-11,250;CL:0000393,2.39e-10,61;CL:0000211,2.39e-10,61;CL:0002334,8.50e-09,12;CL:0000723,6.29e-08,433;CL:0000048,1.28e-07,427;CL:0000034,4.79e-07,441 | |||
|ontology_enrichment_development_v019=CL:0000514;1.07e-10;43!CL:0000355;5.71e-09;58 | |||
|ontology_enrichment_disease=DOID:2394!5.46e-07!14 | |ontology_enrichment_disease=DOID:2394!5.46e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.09e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.07e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.58e-22!83;UBERON:0002329!2.58e-22!83;UBERON:0003077!2.58e-22!83;UBERON:0003059!2.58e-22!83;UBERON:0007282!2.58e-22!83;UBERON:0009618!2.58e-22!83;UBERON:0007285!2.58e-22!83;UBERON:0000486!2.38e-21!82;UBERON:0002100!1.51e-19!216;UBERON:0005256!1.83e-19!143;UBERON:0000475!2.02e-19!365;UBERON:0004290!7.19e-18!70;UBERON:0001134!1.43e-14!61;UBERON:0002036!1.43e-14!61;UBERON:0003082!1.43e-14!61;UBERON:0001981!2.45e-14!60;UBERON:0007500!2.45e-14!60;UBERON:0004537!2.45e-14!60;UBERON:0006965!2.45e-14!60;UBERON:0001637!2.76e-14!42;UBERON:0003509!2.76e-14!42;UBERON:0004572!2.76e-14!42;UBERON:0004872!2.85e-14!84;UBERON:0003102!3.77e-14!95;UBERON:0000055!4.21e-14!69;UBERON:0002385!4.42e-14!63;UBERON:0001015!4.42e-14!63;UBERON:0000383!4.42e-14!63;UBERON:0002049!4.79e-13!79;UBERON:0007798!4.79e-13!79;UBERON:0000483!9.44e-13!309;UBERON:0000119!1.56e-12!312;UBERON:0000490!2.09e-12!138;UBERON:0003914!5.91e-12!118;UBERON:0004573!2.71e-11!33;UBERON:0004571!2.71e-11!33;UBERON:0003104!1.22e-09!238;UBERON:0009142!1.22e-09!238;UBERON:0000468!1.32e-09!659;UBERON:0000481!1.97e-09!347;UBERON:0002199!2.55e-09!45;UBERON:0002416!2.55e-09!45;UBERON:0002097!2.68e-09!40;UBERON:0004535!7.64e-09!110;UBERON:0000467!8.94e-09!625;UBERON:0001009!1.13e-08!113;UBERON:0000480!1.34e-08!626;UBERON:0000477!1.43e-08!286;UBERON:0004111!1.79e-08!241 | |ontology_enrichment_uberon=UBERON:0000914!2.58e-22!83;UBERON:0002329!2.58e-22!83;UBERON:0003077!2.58e-22!83;UBERON:0003059!2.58e-22!83;UBERON:0007282!2.58e-22!83;UBERON:0009618!2.58e-22!83;UBERON:0007285!2.58e-22!83;UBERON:0000486!2.38e-21!82;UBERON:0002100!1.51e-19!216;UBERON:0005256!1.83e-19!143;UBERON:0000475!2.02e-19!365;UBERON:0004290!7.19e-18!70;UBERON:0001134!1.43e-14!61;UBERON:0002036!1.43e-14!61;UBERON:0003082!1.43e-14!61;UBERON:0001981!2.45e-14!60;UBERON:0007500!2.45e-14!60;UBERON:0004537!2.45e-14!60;UBERON:0006965!2.45e-14!60;UBERON:0001637!2.76e-14!42;UBERON:0003509!2.76e-14!42;UBERON:0004572!2.76e-14!42;UBERON:0004872!2.85e-14!84;UBERON:0003102!3.77e-14!95;UBERON:0000055!4.21e-14!69;UBERON:0002385!4.42e-14!63;UBERON:0001015!4.42e-14!63;UBERON:0000383!4.42e-14!63;UBERON:0002049!4.79e-13!79;UBERON:0007798!4.79e-13!79;UBERON:0000483!9.44e-13!309;UBERON:0000119!1.56e-12!312;UBERON:0000490!2.09e-12!138;UBERON:0003914!5.91e-12!118;UBERON:0004573!2.71e-11!33;UBERON:0004571!2.71e-11!33;UBERON:0003104!1.22e-09!238;UBERON:0009142!1.22e-09!238;UBERON:0000468!1.32e-09!659;UBERON:0000481!1.97e-09!347;UBERON:0002199!2.55e-09!45;UBERON:0002416!2.55e-09!45;UBERON:0002097!2.68e-09!40;UBERON:0004535!7.64e-09!110;UBERON:0000467!8.94e-09!625;UBERON:0001009!1.13e-08!113;UBERON:0000480!1.34e-08!626;UBERON:0000477!1.43e-08!286;UBERON:0004111!1.79e-08!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.24e-10;33!UBERON:0004571;1.24e-10;33!UBERON:0001637;1.98e-10;42!UBERON:0003509;1.98e-10;42!UBERON:0004572;1.98e-10;42!UBERON:0007500;7.00e-08;56!UBERON:0001981;7.00e-08;56!UBERON:0004537;7.00e-08;56!UBERON:0002097;8.10e-08;41!UBERON:0002384;2.72e-07;198!UBERON:0002204;5.40e-07;70!UBERON:0001434;9.23e-07;36 | |||
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| ||
|short_description=p3@VEGFC | |short_description=p3@VEGFC | ||
}} | }} |
Latest revision as of 22:39, 16 September 2015
Short description: | p3@VEGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_VEGFC_5end |
Coexpression cluster: | C2788_Urothelial_Fibroblast_Small_Smooth_Mallassezderived_Myoblast_Gingival |
Association with transcript: | -203bp_to_NM_005429, uc003ius.1_5end |
EntrezGene: | VEGFC |
HGNC: | 12682 |
UniProt: | P49767 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.10e-27 | 76 |
muscle precursor cell | 7.16e-15 | 58 |
myoblast | 7.16e-15 | 58 |
multi-potent skeletal muscle stem cell | 7.16e-15 | 58 |
mesodermal cell | 1.06e-14 | 121 |
smooth muscle cell | 8.51e-14 | 43 |
smooth muscle myoblast | 8.51e-14 | 43 |
muscle cell | 5.01e-13 | 55 |
skin fibroblast | 1.36e-12 | 23 |
vascular associated smooth muscle cell | 1.41e-12 | 32 |
embryonic cell | 1.58e-11 | 250 |
electrically responsive cell | 2.39e-10 | 61 |
electrically active cell | 2.39e-10 | 61 |
preadipocyte | 8.50e-09 | 12 |
somatic stem cell | 6.29e-08 | 433 |
multi fate stem cell | 1.28e-07 | 427 |
stem cell | 4.79e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.07e-08 | 14 |