FFCP PHASE1:Hg19::chr7:142494795..142494838,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12173 | |HGNC=12173 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390417,uc003wbm.3_5end | |association_with_transcript=0bp_to_ENST00000390417,uc003wbm.3_5end | ||
|cluster_id=chr7:142494795..142494838,+ | |||
|coexpression_cluster_id=C1622 | |||
|description=CAGE_peak_1_at_TRBJ2-5_5end | |description=CAGE_peak_1_at_TRBJ2-5_5end | ||
|id=chr7:142494795..142494838,+ | |id=chr7:142494795..142494838,+ | ||
|ontology_enrichment_celltype=CL:0000542!8.10e-31!53;CL:0000051!8.10e-31!53;CL:0000838!5.66e-30!52;CL:0000084!5.19e-21!25;CL:0000827!5.19e-21!25;CL:0002087!1.69e-17!119;CL:0000791!5.57e-17!18;CL:0000789!5.57e-17!18;CL:0002420!5.57e-17!18;CL:0002419!5.57e-17!18;CL:0000790!5.57e-17!18;CL:0000738!1.05e-15!140;CL:0000988!1.33e-14!182;CL:0000037!1.18e-13!172;CL:0000566!1.18e-13!172;CL:0002031!3.35e-13!124;CL:0002032!1.23e-12!165;CL:0000837!1.23e-12!165;CL:0000625!3.93e-11!11;CL:0000236!7.33e-11!14;CL:0000945!4.81e-09!24;CL:0000826!4.81e-09!24 | |ontology_enrichment_celltype=CL:0000542!8.10e-31!53;CL:0000051!8.10e-31!53;CL:0000838!5.66e-30!52;CL:0000084!5.19e-21!25;CL:0000827!5.19e-21!25;CL:0002087!1.69e-17!119;CL:0000791!5.57e-17!18;CL:0000789!5.57e-17!18;CL:0002420!5.57e-17!18;CL:0002419!5.57e-17!18;CL:0000790!5.57e-17!18;CL:0000738!1.05e-15!140;CL:0000988!1.33e-14!182;CL:0000037!1.18e-13!172;CL:0000566!1.18e-13!172;CL:0002031!3.35e-13!124;CL:0002032!1.23e-12!165;CL:0000837!1.23e-12!165;CL:0000625!3.93e-11!11;CL:0000236!7.33e-11!14;CL:0000945!4.81e-09!24;CL:0000826!4.81e-09!24 | ||
|ontology_enrichment_celltype_v019=CL:0000084;5.61e-33;25!CL:0000542;2.93e-31;53!CL:0000791;3.95e-30;18!CL:0000789;3.95e-30;18!CL:0002419;3.95e-30;18!CL:0000625;3.49e-19;11!CL:0000236;3.93e-18;13!CL:0000945;1.12e-16;24!CL:0000624;5.82e-11;6!CL:0002087;1.87e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.32e-53,53;CL:0000051,1.32e-53,53;CL:0000838,4.86e-52,52;CL:0000084,4.37e-33,25;CL:0000827,4.37e-33,25;CL:0000791,3.11e-30,18;CL:0000789,3.11e-30,18;CL:0002420,3.11e-30,18;CL:0002419,3.11e-30,18;CL:0000790,3.11e-30,18;CL:0002087,2.56e-23,115;CL:0000738,2.20e-21,136;CL:0000236,2.21e-19,14;CL:0000625,2.47e-19,11;CL:0000037,1.27e-17,168;CL:0000988,1.42e-17,177;CL:0002031,2.80e-17,120;CL:0000945,1.13e-16,24;CL:0000826,1.13e-16,24;CL:0002032,1.88e-15,161;CL:0000837,1.88e-15,161;CL:0000624,5.86e-11,6 | |||
|ontology_enrichment_development_v019=CL:0000051;2.93e-31;53!CL:0000790;3.95e-30;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.31e-12!15;UBERON:0000179!4.31e-12!15;UBERON:0000463!4.31e-12!15 | |ontology_enrichment_uberon=UBERON:0000178!4.31e-12!15;UBERON:0000179!4.31e-12!15;UBERON:0000463!4.31e-12!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.62e-19;15!UBERON:0000179;7.62e-19;15!UBERON:0000463;7.62e-19;15!UBERON:0002390;1.90e-14;32!UBERON:0002193;1.12e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.83e-19,15;UBERON:0000179,7.83e-19,15;UBERON:0000463,7.83e-19,15;UBERON:0004177,8.54e-09,7;UBERON:0005057,8.54e-09,7;UBERON:0002370,3.40e-08,4;UBERON:0005058,3.40e-08,4;UBERON:0009113,3.40e-08,4;UBERON:0003295,3.40e-08,4;UBERON:0005562,3.40e-08,4 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,1.72013755551056,2.09340350391728,0.436882744260345,1.31883489114227,0,0,0,0,0,0,0.123121058076788,0.816002764977012,0,0,0,0,1.37544130346312,1.64201178899891,1.41679406364623,1.96682138424452,5.75744097145819,0.928896739896456,0,0,0,0,3.2698923472107,3.81680571135301,0,0.601633342410425,0.434021741431704,0.447830948479849,0.647787332037959,0.77272670290256,0.290796477559129,1.88937971844405,0,0.929716147622738,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0.752969358170419,0.272906150057846,0,1.53041946185451,0.962787081228281,0,0.329851300186716,0.398927315243264,0,0.290209238628584,0,0,0.75374599577023,0,0,0.605399502633369,1.10483290796269,0.316462387440884,0,0,0,0,0,0,0,0,0,5.27988733383968,7.09980194640771,5.33705552318133,7.68114400619713,8.40831572775626,5.17277195959035,9.91567309177293,5.72432252721218,2.27685187643779,8.80855784056408,6.11637165000366,1.32171328579026,3.36305137788922,1.31692042387539,3.34406609193516,6.28817220398664,7.19605246498282,12.0374276681288,12.0591238654428,7.57516489175573,15.5861382726329,9.13565746458423,16.4979308185909,14.1781692533518,10.8321545506006,6.66074862573511,6.37290803043403,7.5641436117691,10.2249506580764,9.56350182925673,10.5283459845063,8.82884732696053,13.589618094647,8.27158201692233,4.59864592322305,4.81078423675682,4.30133476433155,7.96413535810242,8.46408490013344,16.1576847556224,7.82990619204418,9.7269824477358,4.99722906209383,8.52398107358461,6.56902397536837,7.66105624253983,4.54648332831962,11.5859523106239,0,0,0,0,0,0,0,0,0,0.665188192387692,0.702678285545008,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0.860234595106124,1.04142150482278,1.13061588384802,0.838998872419812,1.10047216776027,0.208994966536811,0,0,0,0,0,0,0.735326160691737,0,0.803697554556718,0.673588117878509,1.0135033243499,0,0.949265659568129,0.732806975721629,1.31780417436063,0,0,0,0.379891534993739,0,0,0.354668382198357,0,0,0.24666754841716,0.311211035399766,0,0.163461903113459,0.151357427644931,0.576175924479999,1.17160715916898,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3032332212413,0,0,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.1466765716419,0.387815147273333,0,0,0.531876233169741,0,0,0,0.266422179016099,0,0.542621605391443,2.46972101034231,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,7.06136407159222,4.53170748464433,4.74380664690938,4.87703537863044,0.254094624222463,0,0.773288812777695,0.335032530668698,0.637938751653163,1.49801404789436,0,0,0,0.500170521059677,0,0,0.356857977594324,0,0,0,0,0,0,0,0,0,0.343143423810856,6.40980880980951,2.15714200818617,4.05564719653088,0.303127571446259,0,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0.116210378459959,0,0,0,0.574072240823034,0,0,0,0.15403067420883,0.784349769176855,0,0.211103257785751,0,0.340187410553031,0.215915916102139,0,0.270946437543853,0,0.764628819135115,0,0.671624264166535,0,0.522870902049801,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0,0.117812402345686,0.606547444719948,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0.578775534266688,0,0,0.30982349809975,1.40847801266121,1.14729081763241,0.294747123039363,0,0,0,0,1.13841952129715,0.349934720244983,0,0,0,0,0,1.68471475667626,0,0,1.52234282769651,2.29391162142713,5.12682468456746,4.52640373369799,4.11362273086194,3.24236655596359,5.40031437238115,7.13812658664843,0,0,0,6.68891430452587,0,6.0470566846152,0.318852545457645,0.59873811429845,1.34053759092657,0,0,0,0,0,0,2.20079311142084,0,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,0,0.146508179271894,0,1.33732061132974,0,0.23874448473769,0,0,1.9882952955326,0,0,1.6480387422676,0,0.19924798825107,4.42054264849836,0,0,0,0,0,0,0,0.197286811273867,7.18449277040819,0,0,0.278304294485554,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0.221158519862449,0.591095237907095,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0,0.366390373607449,0,6.13159789174419,0,0,0,0.19606253431774,0.167821586975843,0,0.158936578980379,0,0,0,0,0,0.353830258013357,1.83309043480088,0.593042257361244,1.97702302314405,2.61054873763638,0.067401132980677,0.802577647298789,0.702793337176017,7.29819156862664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,1.37041924646751,0,0.189932387867636,0.195551382734803,0.240476460754601,1.06726497369676,0.19980960958213,0,0,0,1.00838358591705,0,0,0,0,0,0,0,0,1.27746588066972,0,0.788662062837943,0,0.229160424011684,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,1.59045937961861,0,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0.0524545881349981,0,0,2.30298236783334,0,0,0,0.542999601753713,0,0,0,0.328370082997356,0,0,0,0,0,0,0,0,0.320362237703084,0,0,1.9846640872478,4.94029079744861,0.1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| ||
|short_description=p1@TRBJ2-5 | |short_description=p1@TRBJ2-5 | ||
}} | }} |
Latest revision as of 21:36, 16 September 2015
Short description: | p1@TRBJ2-5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRBJ2-5_5end |
Coexpression cluster: | C1622_thymus_CD8_Natural_vein_blood_acute_Basophils |
Association with transcript: | 0bp_to_ENST00000390417, uc003wbm.3_5end |
EntrezGene: | NA |
HGNC: | 12173 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.32e-53 | 53 |
common lymphoid progenitor | 1.32e-53 | 53 |
lymphoid lineage restricted progenitor cell | 4.86e-52 | 52 |
T cell | 4.37e-33 | 25 |
pro-T cell | 4.37e-33 | 25 |
mature alpha-beta T cell | 3.11e-30 | 18 |
alpha-beta T cell | 3.11e-30 | 18 |
immature T cell | 3.11e-30 | 18 |
mature T cell | 3.11e-30 | 18 |
immature alpha-beta T cell | 3.11e-30 | 18 |
nongranular leukocyte | 2.56e-23 | 115 |
leukocyte | 2.20e-21 | 136 |
B cell | 2.21e-19 | 14 |
CD8-positive, alpha-beta T cell | 2.47e-19 | 11 |
hematopoietic stem cell | 1.27e-17 | 168 |
hematopoietic cell | 1.42e-17 | 177 |
hematopoietic lineage restricted progenitor cell | 2.80e-17 | 120 |
lymphocyte of B lineage | 1.13e-16 | 24 |
pro-B cell | 1.13e-16 | 24 |
hematopoietic oligopotent progenitor cell | 1.88e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.88e-15 | 161 |
CD4-positive, alpha-beta T cell | 5.86e-11 | 6 |
Ontology term | p-value | n |
---|---|---|
blood | 7.83e-19 | 15 |
haemolymphatic fluid | 7.83e-19 | 15 |
organism substance | 7.83e-19 | 15 |
hemopoietic organ | 8.54e-09 | 7 |
immune organ | 8.54e-09 | 7 |
thymus | 3.40e-08 | 4 |
hemolymphoid system gland | 3.40e-08 | 4 |
thymic region | 3.40e-08 | 4 |
pharyngeal gland | 3.40e-08 | 4 |
thymus primordium | 3.40e-08 | 4 |