FFCP PHASE1:Hg19::chr6:112575758..112575776,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3910 | |EntrezGene=3910 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |HGNC=6484 | ||
|TSSclassifier=strong | |||
|UniProt=Q6LET9 | |UniProt=Q6LET9 | ||
|association_with_transcript=0bp_to_ENST00000431543_5end | |association_with_transcript=0bp_to_ENST00000431543_5end | ||
|cluster_id=chr6:112575758..112575776,- | |||
|coexpression_cluster_id=C2836 | |||
|description=CAGE_peak_1_at_LAMA4_5end | |description=CAGE_peak_1_at_LAMA4_5end | ||
|id=chr6:112575758..112575776,- | |id=chr6:112575758..112575776,- | ||
|ontology_enrichment_celltype=CL:0000055!3.79e-31!180;CL:0000222!1.84e-27!119;CL:0000057!1.39e-18!75;CL:0000187!4.76e-17!54;CL:0000183!9.42e-17!59;CL:0000680!1.16e-16!57;CL:0000056!1.16e-16!57;CL:0000355!1.16e-16!57;CL:0002139!1.62e-14!24;CL:0000393!3.30e-14!60;CL:0000211!3.30e-14!60;CL:0000192!3.21e-13!42;CL:0000514!3.21e-13!42;CL:0000213!2.07e-12!57;CL:0000215!2.07e-12!57;CL:0000115!1.33e-11!35;CL:0000071!2.70e-11!18;CL:0002546!2.70e-11!18;CL:0000359!1.44e-10!32;CL:0002078!9.10e-10!44;CL:0002620!6.40e-09!23;CL:0000220!2.40e-08!246;CL:0002321!5.02e-08!248;CL:0000136!5.41e-08!15 | |ontology_enrichment_celltype=CL:0000055!3.79e-31!180;CL:0000222!1.84e-27!119;CL:0000057!1.39e-18!75;CL:0000187!4.76e-17!54;CL:0000183!9.42e-17!59;CL:0000680!1.16e-16!57;CL:0000056!1.16e-16!57;CL:0000355!1.16e-16!57;CL:0002139!1.62e-14!24;CL:0000393!3.30e-14!60;CL:0000211!3.30e-14!60;CL:0000192!3.21e-13!42;CL:0000514!3.21e-13!42;CL:0000213!2.07e-12!57;CL:0000215!2.07e-12!57;CL:0000115!1.33e-11!35;CL:0000071!2.70e-11!18;CL:0002546!2.70e-11!18;CL:0000359!1.44e-10!32;CL:0002078!9.10e-10!44;CL:0002620!6.40e-09!23;CL:0000220!2.40e-08!246;CL:0002321!5.02e-08!248;CL:0000136!5.41e-08!15 | ||
|ontology_enrichment_celltype_v019=CL:0002139;5.51e-15;24!CL:0000071;1.20e-11;18!CL:0000115;1.99e-10;36!CL:0000359;3.23e-10;32!CL:0000192;3.32e-10;43!CL:0000187;4.11e-10;55!CL:0002620;8.58e-09;23!CL:0000393;3.06e-08;61!CL:0000211;3.06e-08;61!CL:0000057;8.56e-08;73!CL:0000213;1.34e-07;58!CL:0000215;1.34e-07;58!CL:0000136;1.49e-07;13!CL:0002078;9.23e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.91e-27,121;CL:0000057,1.09e-18,76;CL:0000187,1.31e-17,55;CL:0000680,3.21e-17,58;CL:0000056,3.21e-17,58;CL:0000355,3.21e-17,58;CL:0002139,5.58e-15,24;CL:0000393,3.23e-14,61;CL:0000211,3.23e-14,61;CL:0000192,1.21e-13,43;CL:0000514,1.21e-13,43;CL:0000115,2.11e-12,36;CL:0000213,7.23e-12,58;CL:0000215,7.23e-12,58;CL:0000071,1.21e-11,18;CL:0002546,1.21e-11,18;CL:0000359,1.53e-10,32;CL:0002078,2.04e-09,45;CL:0002620,8.29e-09,23;CL:0000136,3.18e-08,15 | |||
|ontology_enrichment_development_v019=CL:0002546;1.20e-11;18!CL:0000514;3.32e-10;43!CL:0000355;2.36e-09;58!CL:0000222;6.14e-08;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!2.48e-28!79;UBERON:0007798!2.48e-28!79;UBERON:0000055!3.33e-25!69;UBERON:0004872!6.59e-24!84;UBERON:0001981!2.71e-22!60;UBERON:0007500!2.71e-22!60;UBERON:0004537!2.71e-22!60;UBERON:0006965!2.71e-22!60;UBERON:0004535!9.60e-22!110;UBERON:0001009!9.73e-22!113;UBERON:0004290!2.77e-18!70;UBERON:0000914!3.85e-18!83;UBERON:0002329!3.85e-18!83;UBERON:0003077!3.85e-18!83;UBERON:0003059!3.85e-18!83;UBERON:0007282!3.85e-18!83;UBERON:0009618!3.85e-18!83;UBERON:0007285!3.85e-18!83;UBERON:0002385!2.65e-17!63;UBERON:0001015!2.65e-17!63;UBERON:0000383!2.65e-17!63;UBERON:0003914!4.59e-17!118;UBERON:0001134!7.17e-17!61;UBERON:0002036!7.17e-17!61;UBERON:0003082!7.17e-17!61;UBERON:0001637!8.98e-17!42;UBERON:0003509!8.98e-17!42;UBERON:0004572!8.98e-17!42;UBERON:0000475!1.80e-16!365;UBERON:0000477!4.03e-16!286;UBERON:0004111!6.02e-16!241;UBERON:0000490!2.62e-15!138;UBERON:0000119!2.78e-15!312;UBERON:0004573!3.55e-15!33;UBERON:0004571!3.55e-15!33;UBERON:0000483!1.49e-14!309;UBERON:0000486!2.71e-14!82;UBERON:0005256!5.74e-13!143;UBERON:0000025!1.19e-12!194;UBERON:0001986!2.70e-11!18;UBERON:0004638!2.70e-11!18;UBERON:0004852!2.70e-11!18;UBERON:0000468!3.63e-11!659;UBERON:0002100!1.30e-10!216;UBERON:0000481!1.92e-10!347;UBERON:0000467!9.65e-10!625;UBERON:0000947!9.79e-10!21;UBERON:0010191!9.79e-10!21;UBERON:0006914!1.20e-09!25;UBERON:0000480!1.55e-09!626;UBERON:0000487!1.66e-09!22;UBERON:0002199!1.20e-07!45;UBERON:0002416!1.20e-07!45;UBERON:0000948!1.35e-07!24;UBERON:0005498!1.35e-07!24;UBERON:0004140!1.35e-07!24;UBERON:0009881!1.35e-07!24;UBERON:0004141!1.35e-07!24;UBERON:0003084!1.35e-07!24;UBERON:0007005!1.35e-07!24;UBERON:0004139!1.35e-07!24;UBERON:0004291!1.35e-07!24;UBERON:0007100!2.02e-07!27;UBERON:0003102!3.03e-07!95;UBERON:0003104!7.34e-07!238;UBERON:0009142!7.34e-07!238 | |ontology_enrichment_uberon=UBERON:0002049!2.48e-28!79;UBERON:0007798!2.48e-28!79;UBERON:0000055!3.33e-25!69;UBERON:0004872!6.59e-24!84;UBERON:0001981!2.71e-22!60;UBERON:0007500!2.71e-22!60;UBERON:0004537!2.71e-22!60;UBERON:0006965!2.71e-22!60;UBERON:0004535!9.60e-22!110;UBERON:0001009!9.73e-22!113;UBERON:0004290!2.77e-18!70;UBERON:0000914!3.85e-18!83;UBERON:0002329!3.85e-18!83;UBERON:0003077!3.85e-18!83;UBERON:0003059!3.85e-18!83;UBERON:0007282!3.85e-18!83;UBERON:0009618!3.85e-18!83;UBERON:0007285!3.85e-18!83;UBERON:0002385!2.65e-17!63;UBERON:0001015!2.65e-17!63;UBERON:0000383!2.65e-17!63;UBERON:0003914!4.59e-17!118;UBERON:0001134!7.17e-17!61;UBERON:0002036!7.17e-17!61;UBERON:0003082!7.17e-17!61;UBERON:0001637!8.98e-17!42;UBERON:0003509!8.98e-17!42;UBERON:0004572!8.98e-17!42;UBERON:0000475!1.80e-16!365;UBERON:0000477!4.03e-16!286;UBERON:0004111!6.02e-16!241;UBERON:0000490!2.62e-15!138;UBERON:0000119!2.78e-15!312;UBERON:0004573!3.55e-15!33;UBERON:0004571!3.55e-15!33;UBERON:0000483!1.49e-14!309;UBERON:0000486!2.71e-14!82;UBERON:0005256!5.74e-13!143;UBERON:0000025!1.19e-12!194;UBERON:0001986!2.70e-11!18;UBERON:0004638!2.70e-11!18;UBERON:0004852!2.70e-11!18;UBERON:0000468!3.63e-11!659;UBERON:0002100!1.30e-10!216;UBERON:0000481!1.92e-10!347;UBERON:0000467!9.65e-10!625;UBERON:0000947!9.79e-10!21;UBERON:0010191!9.79e-10!21;UBERON:0006914!1.20e-09!25;UBERON:0000480!1.55e-09!626;UBERON:0000487!1.66e-09!22;UBERON:0002199!1.20e-07!45;UBERON:0002416!1.20e-07!45;UBERON:0000948!1.35e-07!24;UBERON:0005498!1.35e-07!24;UBERON:0004140!1.35e-07!24;UBERON:0009881!1.35e-07!24;UBERON:0004141!1.35e-07!24;UBERON:0003084!1.35e-07!24;UBERON:0007005!1.35e-07!24;UBERON:0004139!1.35e-07!24;UBERON:0004291!1.35e-07!24;UBERON:0007100!2.02e-07!27;UBERON:0003102!3.03e-07!95;UBERON:0003104!7.34e-07!238;UBERON:0009142!7.34e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.18e-14;33!UBERON:0004571;1.18e-14;33!UBERON:0001637;3.12e-13;42!UBERON:0003509;3.12e-13;42!UBERON:0004572;3.12e-13;42!UBERON:0000055;1.31e-12;65!UBERON:0007500;8.63e-12;56!UBERON:0001981;8.63e-12;56!UBERON:0004537;8.63e-12;56!UBERON:0004638;1.20e-11;18!UBERON:0001986;1.20e-11;18!UBERON:0004852;1.20e-11;18!UBERON:0002049;1.79e-11;75!UBERON:0007798;1.79e-11;75!UBERON:0000947;5.10e-10;21!UBERON:0010191;5.10e-10;21!UBERON:0000487;6.08e-10;22!UBERON:0006914;8.89e-10;25!UBERON:0002385;1.53e-08;31!UBERON:0001015;1.53e-08;31!UBERON:0000383;1.53e-08;31!UBERON:0004535;1.95e-07;109!UBERON:0000948;2.60e-07;22!UBERON:0007100;3.89e-07;25!UBERON:0001009;5.73e-07;112 | |||
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| ||
|short_description=p1@LAMA4 | |short_description=p1@LAMA4 | ||
}} | }} |
Latest revision as of 22:13, 19 September 2015
Short description: | p1@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAMA4_5end |
Coexpression cluster: | C2836_Fibroblast_Endothelial_mature_Cardiac_Smooth_mesenchymal_Adipocyte |
Association with transcript: | 0bp_to_ENST00000431543_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | Q6LET9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.91e-27 | 121 |
fibroblast | 1.09e-18 | 76 |
muscle cell | 1.31e-17 | 55 |
muscle precursor cell | 3.21e-17 | 58 |
myoblast | 3.21e-17 | 58 |
multi-potent skeletal muscle stem cell | 3.21e-17 | 58 |
endothelial cell of vascular tree | 5.58e-15 | 24 |
electrically responsive cell | 3.23e-14 | 61 |
electrically active cell | 3.23e-14 | 61 |
smooth muscle cell | 1.21e-13 | 43 |
smooth muscle myoblast | 1.21e-13 | 43 |
endothelial cell | 2.11e-12 | 36 |
lining cell | 7.23e-12 | 58 |
barrier cell | 7.23e-12 | 58 |
blood vessel endothelial cell | 1.21e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.21e-11 | 18 |
vascular associated smooth muscle cell | 1.53e-10 | 32 |
meso-epithelial cell | 2.04e-09 | 45 |
skin fibroblast | 8.29e-09 | 23 |
fat cell | 3.18e-08 | 15 |