FFCP PHASE1:Hg19::chr5:136649590..136649633,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6695 | |EntrezGene=6695 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11251 | |HGNC=11251 | ||
|TSSclassifier=strong | |||
|UniProt=D6RFX3 | |UniProt=D6RFX3 | ||
|association_with_transcript=-363bp_to_ENST00000510405_5end | |association_with_transcript=-363bp_to_ENST00000510405_5end | ||
|cluster_id=chr5:136649590..136649633,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_14_at_SPOCK1_5end | |description=CAGE_peak_14_at_SPOCK1_5end | ||
|id=chr5:136649590..136649633,- | |id=chr5:136649590..136649633,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.33e-118;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.35e-49!115;UBERON:0001049!1.23e-36!57;UBERON:0005068!1.23e-36!57;UBERON:0006241!1.23e-36!57;UBERON:0007135!1.23e-36!57;UBERON:0002616!3.02e-35!59;UBERON:0001869!8.57e-35!32;UBERON:0002619!9.73e-34!22;UBERON:0001893!1.34e-32!34;UBERON:0000955!5.48e-32!69;UBERON:0006238!5.48e-32!69;UBERON:0001950!8.88e-32!20;UBERON:0000956!1.59e-29!25;UBERON:0000203!1.59e-29!25;UBERON:0002791!2.72e-29!33;UBERON:0002020!2.33e-28!34;UBERON:0003528!2.33e-28!34;UBERON:0002780!1.46e-26!41;UBERON:0001890!1.46e-26!41;UBERON:0006240!1.46e-26!41;UBERON:0001017!3.22e-26!82;UBERON:0003080!7.34e-26!42;UBERON:0005743!8.72e-25!86;UBERON:0003075!9.86e-23!86;UBERON:0007284!9.86e-23!86;UBERON:0000073!5.37e-22!94;UBERON:0001016!5.37e-22!94;UBERON:0002346!1.64e-21!90;UBERON:0000200!8.85e-21!6;UBERON:0003056!7.76e-17!61;UBERON:0000153!1.60e-16!129;UBERON:0007811!1.60e-16!129;UBERON:0000033!6.77e-16!123;UBERON:0002771!2.31e-15!3;UBERON:0001871!2.87e-15!7;UBERON:0004733!6.77e-15!12;UBERON:0002028!6.77e-15!12;UBERON:0007277!6.77e-15!12;UBERON:0004732!1.06e-13!13;UBERON:0003076!8.60e-12!15;UBERON:0003057!8.60e-12!15;UBERON:0000025!2.51e-10!194;UBERON:0004121!3.78e-10!169;UBERON:0004111!5.84e-10!241;UBERON:0000924!8.36e-10!173;UBERON:0006601!8.36e-10!173;UBERON:0001872!1.11e-09!5;UBERON:0002680!1.64e-09!9;UBERON:0001895!1.64e-09!9;UBERON:0010092!1.64e-09!9;UBERON:0000349!4.21e-09!5;UBERON:0002037!1.34e-08!6;UBERON:0006215!1.34e-08!6;UBERON:0000477!3.14e-08!286;UBERON:0000064!1.16e-07!219;UBERON:0001896!1.64e-07!3;UBERON:0005290!1.64e-07!3;UBERON:0010096!1.64e-07!3;UBERON:0000475!3.82e-07!365;UBERON:0000481!5.23e-07!347 | |ontology_enrichment_uberon=UBERON:0007023!7.35e-49!115;UBERON:0001049!1.23e-36!57;UBERON:0005068!1.23e-36!57;UBERON:0006241!1.23e-36!57;UBERON:0007135!1.23e-36!57;UBERON:0002616!3.02e-35!59;UBERON:0001869!8.57e-35!32;UBERON:0002619!9.73e-34!22;UBERON:0001893!1.34e-32!34;UBERON:0000955!5.48e-32!69;UBERON:0006238!5.48e-32!69;UBERON:0001950!8.88e-32!20;UBERON:0000956!1.59e-29!25;UBERON:0000203!1.59e-29!25;UBERON:0002791!2.72e-29!33;UBERON:0002020!2.33e-28!34;UBERON:0003528!2.33e-28!34;UBERON:0002780!1.46e-26!41;UBERON:0001890!1.46e-26!41;UBERON:0006240!1.46e-26!41;UBERON:0001017!3.22e-26!82;UBERON:0003080!7.34e-26!42;UBERON:0005743!8.72e-25!86;UBERON:0003075!9.86e-23!86;UBERON:0007284!9.86e-23!86;UBERON:0000073!5.37e-22!94;UBERON:0001016!5.37e-22!94;UBERON:0002346!1.64e-21!90;UBERON:0000200!8.85e-21!6;UBERON:0003056!7.76e-17!61;UBERON:0000153!1.60e-16!129;UBERON:0007811!1.60e-16!129;UBERON:0000033!6.77e-16!123;UBERON:0002771!2.31e-15!3;UBERON:0001871!2.87e-15!7;UBERON:0004733!6.77e-15!12;UBERON:0002028!6.77e-15!12;UBERON:0007277!6.77e-15!12;UBERON:0004732!1.06e-13!13;UBERON:0003076!8.60e-12!15;UBERON:0003057!8.60e-12!15;UBERON:0000025!2.51e-10!194;UBERON:0004121!3.78e-10!169;UBERON:0004111!5.84e-10!241;UBERON:0000924!8.36e-10!173;UBERON:0006601!8.36e-10!173;UBERON:0001872!1.11e-09!5;UBERON:0002680!1.64e-09!9;UBERON:0001895!1.64e-09!9;UBERON:0010092!1.64e-09!9;UBERON:0000349!4.21e-09!5;UBERON:0002037!1.34e-08!6;UBERON:0006215!1.34e-08!6;UBERON:0000477!3.14e-08!286;UBERON:0000064!1.16e-07!219;UBERON:0001896!1.64e-07!3;UBERON:0005290!1.64e-07!3;UBERON:0010096!1.64e-07!3;UBERON:0000475!3.82e-07!365;UBERON:0000481!5.23e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;8.14e-60;6!UBERON:0004733;4.93e-53;12!UBERON:0002028;4.93e-53;12!UBERON:0004732;4.92e-49;13!UBERON:0000996;2.70e-40;1!UBERON:0002680;2.91e-40;9!UBERON:0001895;2.91e-40;9!UBERON:0001896;1.96e-14;3!UBERON:0005290;1.96e-14;3!UBERON:0000073;2.27e-09;53!UBERON:0002616;2.27e-09;53!UBERON:0002298;7.01e-08;6!UBERON:0000955;6.19e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,8.15e-60,6;UBERON:0006215,8.15e-60,6;UBERON:0004733,4.61e-53,12;UBERON:0002028,4.61e-53,12;UBERON:0007277,4.61e-53,12;UBERON:0004732,4.63e-49,13;UBERON:0003076,1.18e-42,15;UBERON:0003057,1.18e-42,15;UBERON:0002680,2.91e-40,9;UBERON:0001895,2.91e-40,9;UBERON:0010092,2.91e-40,9;UBERON:0000996,3.30e-40,1;UBERON:0001896,1.83e-14,3;UBERON:0005290,1.83e-14,3;UBERON:0010096,1.83e-14,3;UBERON:0000073,1.93e-12,53;UBERON:0002616,1.93e-12,53;UBERON:0001049,7.99e-12,56;UBERON:0005068,7.99e-12,56;UBERON:0006241,7.99e-12,56;UBERON:0007135,7.99e-12,56;UBERON:0000955,9.44e-10,68;UBERON:0006238,9.44e-10,68;UBERON:0007023,2.58e-09,114;UBERON:0001017,2.54e-08,81;UBERON:0003075,2.54e-08,82;UBERON:0007284,2.54e-08,82;UBERON:0002346,5.76e-08,86;UBERON:0002298,6.78e-08,6;UBERON:0001016,1.45e-07,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,4.5774520895125,16.9186267694774,2.65992857058193,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0,0,0,0.633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.546746009922222,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0.250381861413,0,1.66393577305278,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0.276629009856872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.742913430802341,0,0.413373593002368,0.443910671357348,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.271878931907327,0.460409414939944,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.543931921527318,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0,0,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,1.33151354837103,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,4.5774520895125,16.9186267694774,2.65992857058193,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0,0,0,0.633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.546746009922222,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0.250381861413,0,1.66393577305278,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0.276629009856872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.742913430802341,0,0.413373593002368,0.443910671357348,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.271878931907327,0.460409414939944,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.543931921527318,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0,0,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,1.33151354837103,0,0 | ||
|short_description=p14@SPOCK1 | |short_description=p14@SPOCK1 | ||
}} | }} |
Latest revision as of 20:41, 24 September 2015
Short description: | p14@SPOCK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_SPOCK1_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -363bp_to_ENST00000510405_5end |
EntrezGene: | SPOCK1 |
HGNC: | 11251 |
UniProt: | D6RFX3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 8.15e-60 | 6 |
rhombic lip | 8.15e-60 | 6 |
segmental subdivision of hindbrain | 4.61e-53 | 12 |
hindbrain | 4.61e-53 | 12 |
presumptive hindbrain | 4.61e-53 | 12 |
segmental subdivision of nervous system | 4.63e-49 | 13 |
posterior neural tube | 1.18e-42 | 15 |
chordal neural plate | 1.18e-42 | 15 |
regional part of metencephalon | 2.91e-40 | 9 |
metencephalon | 2.91e-40 | 9 |
future metencephalon | 2.91e-40 | 9 |
vagina | 3.30e-40 | 1 |
medulla oblongata | 1.83e-14 | 3 |
myelencephalon | 1.83e-14 | 3 |
future myelencephalon | 1.83e-14 | 3 |
regional part of nervous system | 1.93e-12 | 53 |
regional part of brain | 1.93e-12 | 53 |
neural tube | 7.99e-12 | 56 |
neural rod | 7.99e-12 | 56 |
future spinal cord | 7.99e-12 | 56 |
neural keel | 7.99e-12 | 56 |
brain | 9.44e-10 | 68 |
future brain | 9.44e-10 | 68 |
adult organism | 2.58e-09 | 114 |
central nervous system | 2.54e-08 | 81 |
neural plate | 2.54e-08 | 82 |
presumptive neural plate | 2.54e-08 | 82 |
neurectoderm | 5.76e-08 | 86 |
brainstem | 6.78e-08 | 6 |
nervous system | 1.45e-07 | 89 |