FFCP PHASE1:Hg19::chr3:98516175..98516240,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:98516175..98516240,- | |||
|coexpression_cluster_id=C2763 | |||
|description=CAGE_peak_at_chr3:98516175..98516240,- | |description=CAGE_peak_at_chr3:98516175..98516240,- | ||
|id=chr3:98516175..98516240,- | |id=chr3:98516175..98516240,- | ||
|ontology_enrichment_celltype=CL:0002321!1.07e-13!248;CL:0000220!1.52e-13!246;CL:0000055!2.10e-12!180;CL:0000680!1.70e-10!57;CL:0000056!1.70e-10!57;CL:0000355!1.70e-10!57;CL:0000187!1.22e-09!54;CL:0000066!1.96e-09!254;CL:0000359!4.03e-09!32;CL:0000192!8.06e-09!42;CL:0000514!8.06e-09!42;CL:0000183!5.10e-08!59;CL:0000393!1.58e-07!60;CL:0000211!1.58e-07!60 | |ontology_enrichment_celltype=CL:0002321!1.07e-13!248;CL:0000220!1.52e-13!246;CL:0000055!2.10e-12!180;CL:0000680!1.70e-10!57;CL:0000056!1.70e-10!57;CL:0000355!1.70e-10!57;CL:0000187!1.22e-09!54;CL:0000066!1.96e-09!254;CL:0000359!4.03e-09!32;CL:0000192!8.06e-09!42;CL:0000514!8.06e-09!42;CL:0000183!5.10e-08!59;CL:0000393!1.58e-07!60;CL:0000211!1.58e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000359;9.62e-10;32!CL:0002595;9.10e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.11e-09,32;CL:0000192,1.20e-07,43;CL:0000514,1.20e-07,43;CL:0000680,1.90e-07,58;CL:0000056,1.90e-07,58;CL:0000355,1.90e-07,58;CL:0002321,2.87e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.87e-11!143;DOID:14566!1.37e-08!239;DOID:162!9.30e-08!235 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.90e-11;14!DOID:193;1.67e-10;29!DOID:120;4.14e-10;27!DOID:1115;1.15e-07;20 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.22e-11,14;DOID:193,1.14e-10,29;DOID:120,2.67e-10,27;DOID:14566,3.98e-09,239;DOID:1115,7.86e-08,20;DOID:162,9.63e-08,235 | |||
|ontology_enrichment_uberon=UBERON:0000481!3.29e-13!347;UBERON:0000475!8.09e-12!365;UBERON:0003104!1.21e-11!238;UBERON:0009142!1.21e-11!238;UBERON:0000483!1.02e-10!309;UBERON:0002100!2.15e-10!216;UBERON:0005256!2.87e-10!143;UBERON:0001134!3.84e-10!61;UBERON:0002036!3.84e-10!61;UBERON:0003082!3.84e-10!61;UBERON:0000119!3.98e-10!312;UBERON:0002385!1.10e-09!63;UBERON:0001015!1.10e-09!63;UBERON:0000383!1.10e-09!63;UBERON:0004290!3.63e-09!70;UBERON:0000486!5.51e-09!82;UBERON:0000490!5.81e-09!138;UBERON:0003914!1.82e-08!118;UBERON:0000914!5.67e-08!83;UBERON:0002329!5.67e-08!83;UBERON:0003077!5.67e-08!83;UBERON:0003059!5.67e-08!83;UBERON:0007282!5.67e-08!83;UBERON:0009618!5.67e-08!83;UBERON:0007285!5.67e-08!83;UBERON:0001048!1.88e-07!168 | |ontology_enrichment_uberon=UBERON:0000481!3.29e-13!347;UBERON:0000475!8.09e-12!365;UBERON:0003104!1.21e-11!238;UBERON:0009142!1.21e-11!238;UBERON:0000483!1.02e-10!309;UBERON:0002100!2.15e-10!216;UBERON:0005256!2.87e-10!143;UBERON:0001134!3.84e-10!61;UBERON:0002036!3.84e-10!61;UBERON:0003082!3.84e-10!61;UBERON:0000119!3.98e-10!312;UBERON:0002385!1.10e-09!63;UBERON:0001015!1.10e-09!63;UBERON:0000383!1.10e-09!63;UBERON:0004290!3.63e-09!70;UBERON:0000486!5.51e-09!82;UBERON:0000490!5.81e-09!138;UBERON:0003914!1.82e-08!118;UBERON:0000914!5.67e-08!83;UBERON:0002329!5.67e-08!83;UBERON:0003077!5.67e-08!83;UBERON:0003059!5.67e-08!83;UBERON:0007282!5.67e-08!83;UBERON:0009618!5.67e-08!83;UBERON:0007285!5.67e-08!83;UBERON:0001048!1.88e-07!168 | ||
|ontology_enrichment_uberon_v019=UBERON:0000992;1.75e-08;13!UBERON:0003834;9.10e-07;5!UBERON:0001533;9.10e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000992,1.02e-08,13;UBERON:0003104,1.89e-08,160;UBERON:0009142,1.89e-08,160;UBERON:0003914,1.24e-07,117;UBERON:0001134,3.07e-07,62;UBERON:0002036,3.07e-07,62;UBERON:0003082,3.07e-07,62;UBERON:0002100,3.78e-07,199;UBERON:0002385,8.18e-07,64;UBERON:0001015,8.18e-07,64;UBERON:0000383,8.18e-07,64 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0.872338524100369,0,0,0.261185628199839,0.245733936501509,0,0,0,0.123766352960047,0,0.672325146451775,2.41077811209591,5.11217063271161,1.46379839637152,0.123121058076788,1.02000345622126,0.313454721478088,0.85870796139317,1.77936752594749,0.502170558379211,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,0,0,0.289693037921647,0,0.486634870302636,3.87592750372678,5.76496433402666,4.56740885604255,0.130979075497713,0,0.370784442784429,0,0.174129737299267,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,0,0,0,0,0,0.760272105718513,0,0,0,0.17859945656816,1.12264686313085,0.788280363383256,0,0,0.183201743930407,0,0,0,0.993943903390637,0.25326102332916,0.794455084879313,0.860509862246441,1.06400514659507,0,1.06748995729705,0.98667019366864,0,0.404132016209064,0.653847612453835,0.302714855289863,0.576175924479999,0,0.624320153660641,0,1.04614076386261,0.587172493218824,0.485618833104395,0.140450806702248,0.816616685019573,0.491337269247072,0.309977343527296,0,0.741800787835671,0,0.718618141816238,0,0.250237039743928,0,0.877955241761676,0.919463387397059,0.751190294532984,0.567160915800105,0.358779271377724,0.427114777637135,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0.843881661206331,0.0974370051611986,0,0,0,0.710019185033229,0.403008392910561,0.169560592310488,2.12586938479627,1.09098448236334,1.72082757233402,0.487894824518382,0.132529768321485,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0.721879481669586,0.118306800039844,0.168584690078102,0,0.220587945464788,0,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,1.26755034821831,0,1.18157981336281,0,0,1.3725424823882,0.768251997860379,0,0.904760751704678,0.185176890317059,0.325808305310325,0,4.3299402607582,1.507095264676,0.469634776943287,0.144366447761074,0,0.190254152234598,0,0,0.246217006087397,0,0,0,0.503946384596579,0.425325291727159,0.626909658919938,0.290633938513962,0.383382679165211,0,0.264145302039678,0.207328115540772,0.144119953416961,0,0.190493682876507,0.381988425558278,0,0,0.411309970813294,1.50171528921959,0.571652865261156,0,0,0,1.55126058909333,0,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,1.30294473717494,0,0.791951872933429,0.602878754119172,3.48613383440118,3.99891964728228,0,0,0,0,0,32.8064881593652,1.73737568001095,4.52047909610843,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,0.813795071099207,1.03985430765404,0.713715955188647,0.946214490203608,0.819989904948992,0.300946099727719,0,0,0,0.737476674166813,0.347534457872331,0,0,0,0,0,0,0,0,0.248107807818777,0,0.561320188866147,0.384417447767103,0,0.160853921143607,0,2.31314540703983,2.13074070375753,0.98552587216571,3.11552657510173,1.39452454151951,0,1.80455823272956,0.460404944679482,0.229628896329213,0.546273504020151,0.262248829918848,0.451199612907412,2.6185214615501,0,1.46139224653261,1.89992932007176,0,0,4.96606607034921,1.54227252690289,0,0.501689773854853,2.03901018436031,0.831076008928724,2.23874754722178,0,0,0.769350375349168,0.328014645699706,0.650756789328606,0.103041011647722,0.27470839445503,0.082509499920588,0,0,0,0.676695028044854,0.770243085573222,0.614014698904518,0.275673144969061,0.429680979473094,0.580066775656914,0.93749290157711,0,0.826424576804891,7.68760269460425,0.255225424989168,2.52894452138875,0,0.62962469366128,0.6970372701606,0,1.06461206063404,0.869932992075073,1.11194531462352,4.15062171551775,0.744316738719335,0,1.14378116354295,0,0,0.95460974377781,0,0.539617372749944,0.54907405947211,1.29593642580255,1.01091240786658,6.34041284692033,4.63384301862879,0,1.21856744815642,1.05650146756755,0.136499911407986,0.707027159768564,2.26016233240486,1.10273068709225,17.9128523315129,4.82295973779139,0,1.9676842561399,0.811641507850816,2.16876448669825,1.40847801266121,0.286822704408103,0.196498082026242,1.426684205925,0.709522128141196,0,0,0,0,0.48111056362756,0,0,0.0941438007767792,0,0,0,1.60806380144872,0,0,0,0,0,0,0,0,0,4.81239927631679,0.490080431962063,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,1.23087398947712,0,0,0,0.37428108081644,0,2.06312886974173,0.111443384277478,3.97790605528978,0,0,0,0,0.422008249231538,0.222617410045812,0,1.47787785689595,0,0.276283915531148,0.251932747854276,0.715880777515084,0,0,1.43789361835723,0,0,0,0,1.11136990144637,0,0,0,3.1251331330228,0,0,0.796554137998498,2.2882828526349,0.236387681767936,0,0,0.347249989866585,0,0.120596438625408,0,0.331737779793674,0,0.438770794307945,0,0.139423744278603,0,0.113942055847001,0.69169171316418,0,0.108647371922008,0,0.915975934018623,0,0,0.156980256395025,0.166211681900156,0,0,0,0,0,3.37596903244843,1.79556088975062,0.141353071433941,0,2.98578579323551,0.26537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| ||
|short_description=p@chr3:98516175..98516240,- | |short_description=p@chr3:98516175..98516240,- | ||
}} | }} |
Latest revision as of 00:06, 30 July 2015
Short description: | p@chr3:98516175..98516240, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98516175..98516240, - |
Coexpression cluster: | C2763_mucinous_glioblastoma_Myoblast_myxofibrosarcoma_fibrous_Smooth_squamous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.11e-09 | 32 |
smooth muscle cell | 1.20e-07 | 43 |
smooth muscle myoblast | 1.20e-07 | 43 |
muscle precursor cell | 1.90e-07 | 58 |
myoblast | 1.90e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.90e-07 | 58 |
embryonic cell | 2.87e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
female gonad | 1.02e-08 | 13 |
mesenchyme | 1.89e-08 | 160 |
entire embryonic mesenchyme | 1.89e-08 | 160 |
epithelial tube | 1.24e-07 | 117 |
skeletal muscle tissue | 3.07e-07 | 62 |
striated muscle tissue | 3.07e-07 | 62 |
myotome | 3.07e-07 | 62 |
trunk | 3.78e-07 | 199 |
muscle tissue | 8.18e-07 | 64 |
musculature | 8.18e-07 | 64 |
musculature of body | 8.18e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.22e-11 | 14 |
reproductive organ cancer | 1.14e-10 | 29 |
female reproductive organ cancer | 2.67e-10 | 27 |
disease of cellular proliferation | 3.98e-09 | 239 |
sarcoma | 7.86e-08 | 20 |
cancer | 9.63e-08 | 235 |