FFCP PHASE1:Hg19::chr3:29577233..29577234,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:29577233..29577234,+ | |||
|description=CAGE_peak_at_chr3:29577233..29577234,+ | |description=CAGE_peak_at_chr3:29577233..29577234,+ | ||
|id=chr3:29577233..29577234,+ | |id=chr3:29577233..29577234,+ | ||
|ontology_enrichment_celltype=CL:0000057!7.34e-07!75 | |ontology_enrichment_celltype=CL:0000057!7.34e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0000064;4.14e-08;3!CL:0000067;4.14e-08;3!CL:0005012;4.14e-08;3!CL:0002304;4.14e-08;3!CL:0002504;1.07e-07;3!CL:1000279;1.07e-07;3!CL:1000280;1.07e-07;3!CL:0002548;9.86e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002504,1.37e-07,3;CL:1000279,1.37e-07,3;CL:1000280,1.37e-07,3;CL:0000064,1.54e-07,3;CL:0000067,1.54e-07,3;CL:0005012,1.54e-07,3;CL:0002304,1.54e-07,3;CL:0002548,8.52e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;9.06e-08;5!DOID:450;9.06e-08;5!DOID:66;9.06e-08;5!DOID:423;9.06e-08;5!DOID:0080000;9.06e-08;5!DOID:11722;9.06e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.50e-08,5;DOID:450,6.50e-08,5;DOID:66,6.50e-08,5;DOID:423,6.50e-08,5;DOID:0080000,6.50e-08,5;DOID:11722,6.50e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.59e-12!115;UBERON:0000475!1.09e-07!365;UBERON:0000481!6.29e-07!347 | |ontology_enrichment_uberon=UBERON:0007023!8.59e-12!115;UBERON:0000475!1.09e-07!365;UBERON:0000481!6.29e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0000948;4.11e-09;22!UBERON:0001778;4.14e-08;3!UBERON:0001775;4.14e-08;3!UBERON:0007100;9.01e-08;25!UBERON:0003978;1.07e-07;3!UBERON:0000946;1.07e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000948,2.95e-08,24;UBERON:0005498,2.95e-08,24;UBERON:0004140,2.95e-08,24;UBERON:0009881,2.95e-08,24;UBERON:0004141,2.95e-08,24;UBERON:0003084,2.95e-08,24;UBERON:0007005,2.95e-08,24;UBERON:0004139,2.95e-08,24;UBERON:0004291,2.95e-08,24;UBERON:0003978,9.59e-08,3;UBERON:0009751,9.59e-08,3;UBERON:0000946,9.59e-08,3;UBERON:0002523,9.59e-08,3;UBERON:0005983,9.59e-08,3;UBERON:0002165,9.59e-08,3;UBERON:0002062,9.59e-08,3;UBERON:0007280,9.59e-08,3;UBERON:0001778,1.54e-07,3;UBERON:0001775,1.54e-07,3;UBERON:0007100,4.10e-07,27;UBERON:0000010,5.86e-07,8 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.563817616383885,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0.730310090387373,0.975865597581014,0,0.204000691244253,0,0.286235987131057,0.136874425072884,0.125542639594803,0.305653622991805,0.328402357799783,0.0787107813136792,0,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,2.36723902867367,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,4.87613732627923,0,0.12786256184353,1.44575660953827,0,0.289693037921647,0,0.486634870302636,1.03988298880475,2.21729397462564,1.14185221401064,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0.775250277507987,0.71153252537342,0.33472061276467,0,0,0,0,0,0.982297011124877,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0.25326102332916,0.397227542439656,1.43418310374407,0,0,1.06748995729705,0.24666754841716,2.8008993185979,1.34710672069688,1.9615428373615,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0.140450806702248,0.61246251376468,0.122834317311768,0,0,0.741800787835671,0,0,0.505008341862199,0.500474079487857,0,0.438977620880838,0,0,0.226864366320042,1.25572744982203,0.213557388818567,1.27159140695737,1.80054657650641,1.44273540933814,1.03056216018252,0.37223371266318,3.03797398034279,0.292311015483596,1.51460264546469,0.644349290496095,1.2931684545505,0.710019185033229,0.302256294682921,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0.570762456703795,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0.258543431515556,0,0,0,0,0,0,0,0.285955987316295,0.542621605391443,0,0,0,0,0,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.723906533337896,1.2328579353023,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0.415941723061614,0.178428988797162,0.946214490203608,0.35142424497814,0.300946099727719,0,0,0,0,0.347534457872331,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0.248107807818777,2.14846762603287,0.561320188866147,0.256278298511402,1.02341449813341,0.965123526861645,0,0.308419387605311,0,0.0821271560138091,0,0,0.483437798366489,0,0.0920809889358963,0,0.364182336013434,0.393373244878272,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0.515205058238611,0.27470839445503,0.247528499761764,0,0,0,0.193341436584244,0.308097234229289,1.07452572308291,0.275673144969061,1.18162269355101,0.290033387828457,0.852266274161009,0.178064071293475,0,0,1.53135254993501,0,0,1.88887408098384,0,0.616067160352178,0,0,0.18532421910392,0.286249773483982,0.372158369359667,0.316379424718726,0.953150969619124,0,0,0,0,1.61885211824983,1.09814811894422,1.29593642580255,0,0,0,0,0,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0,0,0.430234056612155,0,0,0.354761064070598,0.211107635297664,0.987884678879706,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0.743212700502875,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,1.31857361344705,0.242721043499027,0,0,0,0.296964680832639,0.307160702099232,0,0.422008249231538,0.556543525114529,0.16480387422676,0,2.19172787076177,0.276283915531148,0,0.306806047506464,0,0,0,0,0,0.394573622547734,0,0,0,0.371072392647405,0,0,0,1.44999915086959,0,0.508507300585533,0,0.344743373241465,0,1.21537496453305,0,0.241192877250816,0,0,0,0,0.435753854075961,0.41827123283581,1.15425387755696,1.25336261431701,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0.210998064528027,0.326465616318295,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.067401132980677,2.40773294189637,0,0,0,0,0,4.83962864194656,0.30607276163049,0.63186579628488,0,0,0,0,0,0,0,0.554698692052555,0,0,0.174118413160805,1.57254001417827,1.20390222730132,0,0.0730893170861856,0.0821154570532092,0.193978032976839,1.6768664071385,0.677942222341597,1.64450309576101,0,0.253243183823515,0,0.0801588202515337,0.640358984218058,0,0,2.06165873098648,0,0,0.248505071130865,0,0.543616824294456,0.627617077873999,0.509991088181609,0,0,0.410716136675979,0,0.859530882839914,0,1.67569440763353,1.14580212005842,1.43574604915363,0,0.429226048136571,0.89268582976749,1.41085292222125,1.08089965062721,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0.472834243795189,0.0524545881349981,0.105600336519406,0.179287339332845,0.191915197319445,1.42939065274673,0,0.25426853765475,0.542999601753713,0,0,0,0,0.681552087141687,0,0,1.32506888912221,0.387848869084652,0.39669780522807,0,0,0.854299300541557,1.25763444079733,1.24271716604159,0.496166021811951,0,0.365377795142688,0,1.63205341010842,1.7548292581589,2.45076461410769,2.95085367638824,0,0.886068179966986,0,0.751145584238999,1.72022758707021,0.332787154610557,0.248385611765534,0,0,0.303298235083296,0.285465333544967,0,0,0,0.5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| ||
|short_description=p@chr3:29577233..29577234,+ | |short_description=p@chr3:29577233..29577234,+ | ||
}} | }} |
Latest revision as of 20:20, 29 July 2015
Short description: | p@chr3:29577233..29577234, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:29577233..29577234, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 1.37e-07 | 3 |
smooth muscle cell of large intestine | 1.37e-07 | 3 |
smooth muscle cell of colon | 1.37e-07 | 3 |
ciliated cell | 1.54e-07 | 3 |
ciliated epithelial cell | 1.54e-07 | 3 |
multi-ciliated epithelial cell | 1.54e-07 | 3 |
non-pigmented ciliary epithelial cell | 1.54e-07 | 3 |
cardiac fibroblast | 8.52e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
heart | 2.95e-08 | 24 |
primitive heart tube | 2.95e-08 | 24 |
primary heart field | 2.95e-08 | 24 |
anterior lateral plate mesoderm | 2.95e-08 | 24 |
heart tube | 2.95e-08 | 24 |
heart primordium | 2.95e-08 | 24 |
cardiac mesoderm | 2.95e-08 | 24 |
cardiogenic plate | 2.95e-08 | 24 |
heart rudiment | 2.95e-08 | 24 |
valve | 9.59e-08 | 3 |
cardiac mesenchyme | 9.59e-08 | 3 |
cardial valve | 9.59e-08 | 3 |
tunica intima | 9.59e-08 | 3 |
heart layer | 9.59e-08 | 3 |
endocardium | 9.59e-08 | 3 |
endocardial cushion | 9.59e-08 | 3 |
presumptive endocardium | 9.59e-08 | 3 |
ciliary epithelium | 1.54e-07 | 3 |
ciliary body | 1.54e-07 | 3 |
primary circulatory organ | 4.10e-07 | 27 |
peripheral nervous system | 5.86e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.50e-08 | 5 |
myotonic disease | 6.50e-08 | 5 |
muscle tissue disease | 6.50e-08 | 5 |
myopathy | 6.50e-08 | 5 |
muscular disease | 6.50e-08 | 5 |
myotonic dystrophy | 6.50e-08 | 5 |