FFCP PHASE1:Hg19::chr3:25469875..25469893,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5915 | |EntrezGene=5915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9865 | |HGNC=9865 | ||
|TSSclassifier=strong | |||
|UniProt=F1D8S6,P10826 | |UniProt=F1D8S6,P10826 | ||
|association_with_transcript=41bp_to_NM_000965,uc003cdh.2_5end | |association_with_transcript=41bp_to_NM_000965,uc003cdh.2_5end | ||
|cluster_id=chr3:25469875..25469893,+ | |||
|description=CAGE_peak_5_at_RARB_5end | |description=CAGE_peak_5_at_RARB_5end | ||
|id=chr3:25469875..25469893,+ | |id=chr3:25469875..25469893,+ | ||
|ontology_enrichment_celltype=CL:0000187!2.63e-11!54;CL:0000393!3.95e-11!60;CL:0000211!3.95e-11!60;CL:0000183!5.37e-11!59;CL:0000222!1.02e-10!119;CL:0000680!4.18e-10!57;CL:0000056!4.18e-10!57;CL:0000355!4.18e-10!57;CL:0000192!7.25e-09!42;CL:0000514!7.25e-09!42;CL:0000359!5.66e-08!32;CL:0000071!7.93e-07!18;CL:0002546!7.93e-07!18 | |ontology_enrichment_celltype=CL:0000187!2.63e-11!54;CL:0000393!3.95e-11!60;CL:0000211!3.95e-11!60;CL:0000183!5.37e-11!59;CL:0000222!1.02e-10!119;CL:0000680!4.18e-10!57;CL:0000056!4.18e-10!57;CL:0000355!4.18e-10!57;CL:0000192!7.25e-09!42;CL:0000514!7.25e-09!42;CL:0000359!5.66e-08!32;CL:0000071!7.93e-07!18;CL:0002546!7.93e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002596;3.88e-10;2!CL:0002589;2.84e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002596,2.86e-10,2;CL:0002589,8.07e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;8.01e-10;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!8.22e-26!312;UBERON:0000483!2.19e-24!309;UBERON:0000025!5.52e-22!194;UBERON:0000477!4.50e-21!286;UBERON:0004111!1.61e-19!241;UBERON:0000481!1.05e-17!347;UBERON:0000490!9.71e-17!138;UBERON:0004872!5.34e-16!84;UBERON:0003056!3.91e-15!61;UBERON:0001869!4.11e-14!32;UBERON:0001893!1.42e-13!34;UBERON:0002780!1.44e-13!41;UBERON:0001890!1.44e-13!41;UBERON:0006240!1.44e-13!41;UBERON:0001981!3.34e-13!60;UBERON:0007500!3.34e-13!60;UBERON:0004537!3.34e-13!60;UBERON:0006965!3.34e-13!60;UBERON:0003914!3.48e-13!118;UBERON:0002049!4.98e-13!79;UBERON:0007798!4.98e-13!79;UBERON:0003080!5.43e-13!42;UBERON:0002791!7.27e-13!33;UBERON:0003075!8.26e-13!86;UBERON:0007284!8.26e-13!86;UBERON:0000475!2.84e-12!365;UBERON:0004535!5.59e-12!110;UBERON:0001009!8.54e-12!113;UBERON:0002346!1.58e-11!90;UBERON:0002020!1.94e-11!34;UBERON:0003528!1.94e-11!34;UBERON:0000055!4.93e-11!69;UBERON:0000922!3.24e-10!612;UBERON:0000956!3.31e-10!25;UBERON:0000203!3.31e-10!25;UBERON:0001637!4.64e-10!42;UBERON:0003509!4.64e-10!42;UBERON:0004572!4.64e-10!42;UBERON:0005743!5.22e-10!86;UBERON:0000955!1.31e-09!69;UBERON:0006238!1.31e-09!69;UBERON:0002050!1.34e-09!605;UBERON:0005423!1.34e-09!605;UBERON:0001134!1.49e-09!61;UBERON:0002036!1.49e-09!61;UBERON:0003082!1.49e-09!61;UBERON:0002616!1.74e-09!59;UBERON:0002385!2.08e-09!63;UBERON:0001015!2.08e-09!63;UBERON:0000383!2.08e-09!63;UBERON:0000923!3.06e-09!604;UBERON:0005291!3.06e-09!604;UBERON:0006598!3.06e-09!604;UBERON:0002532!3.06e-09!604;UBERON:0001017!3.73e-09!82;UBERON:0004573!7.48e-09!33;UBERON:0004571!7.48e-09!33;UBERON:0001049!8.59e-09!57;UBERON:0005068!8.59e-09!57;UBERON:0006241!8.59e-09!57;UBERON:0007135!8.59e-09!57;UBERON:0001950!1.73e-08!20;UBERON:0007023!2.21e-08!115;UBERON:0000073!3.21e-08!94;UBERON:0001016!3.21e-08!94;UBERON:0002619!4.51e-08!22;UBERON:0000468!4.65e-08!659;UBERON:0004290!1.10e-07!70;UBERON:0000487!1.13e-07!22;UBERON:0000153!2.02e-07!129;UBERON:0007811!2.02e-07!129;UBERON:0000033!4.69e-07!123;UBERON:0000467!4.84e-07!625;UBERON:0000480!5.97e-07!626;UBERON:0000914!6.61e-07!83;UBERON:0002329!6.61e-07!83;UBERON:0003077!6.61e-07!83;UBERON:0003059!6.61e-07!83;UBERON:0007282!6.61e-07!83;UBERON:0009618!6.61e-07!83;UBERON:0007285!6.61e-07!83;UBERON:0001986!7.93e-07!18;UBERON:0004638!7.93e-07!18;UBERON:0004852!7.93e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000369;2.27e-17;4!UBERON:0002435;2.27e-17;4!UBERON:0000204;2.27e-17;4!UBERON:0005383;1.33e-13;3!UBERON:0005382;1.33e-13;3!UBERON:0005396;3.88e-10;2!UBERON:0009663;5.74e-10;7!UBERON:0001873;8.01e-10;2!UBERON:0001529;2.84e-09;2!UBERON:0007204;2.84e-09;2!UBERON:0002420;9.20e-08;9!UBERON:0000125;9.20e-08;9!UBERON:0007245;9.20e-08;9!UBERON:0002308;9.20e-08;9!UBERON:0010009;9.20e-08;9!UBERON:0010011;9.20e-08;9!UBERON:0000454;9.20e-08;9!UBERON:0002791;2.64e-07;32!UBERON:0001869;5.96e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,8.44e-18,4;UBERON:0002435,8.44e-18,4;UBERON:0000204,8.44e-18,4;UBERON:0010082,8.44e-18,4;UBERON:0005383,8.94e-14,3;UBERON:0005382,8.94e-14,3;UBERON:0005396,2.86e-10,2;UBERON:0009663,3.31e-10,7;UBERON:0001873,8.62e-10,2;UBERON:0010122,8.62e-10,2;UBERON:0001529,8.07e-09,2;UBERON:0007204,8.07e-09,2;UBERON:0003056,1.01e-08,61;UBERON:0000483,2.63e-08,306;UBERON:0000119,3.73e-08,309;UBERON:0002420,6.05e-08,9;UBERON:0000125,6.05e-08,9;UBERON:0007245,6.05e-08,9;UBERON:0002308,6.05e-08,9;UBERON:0010009,6.05e-08,9;UBERON:0010011,6.05e-08,9;UBERON:0000454,6.05e-08,9;UBERON:0000025,4.18e-07,192;UBERON:0004573,4.68e-07,33;UBERON:0004571,4.68e-07,33;UBERON:0002791,4.98e-07,32;UBERON:0001869,4.98e-07,32;UBERON:0000490,8.71e-07,148 | |||
|phase1_expression=0.181678379270557,0,0,1.0007329835313,0,0,0,0,0,0.245733936501509,0,0,0,0.990130823680373,0.994192127183747,0,1.80808358407193,0,0.487932798790507,0.246242116153576,0,0,3.14859585844162,0.684372125364421,0.87879847716362,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.895037932904712,0,0,0,0,0,1.13441780596881,0.221729397462564,0.790513071238134,0.458426764241994,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0,0.56530794192401,0,0,0.208994966536811,0,0.35576626268671,0,0.402829317109147,0.760272105718513,0,0.367663080345869,1.62028389576352,0.446498641420399,0.44905874525234,0.450445921933289,1.53316637465883,1.89853131913626,0.732806975721629,0,0,0,0.496971951695318,0.379891534993739,0.264818361626438,0.286836620748814,0,0,2.1349799145941,0.24666754841716,0.622422070799533,0.134710672069688,0.490385709340376,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.567160915800105,0,0.213557388818567,0,0,0,0.257640540045629,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,1.20097467208968,0,0,0,0,0,0,1.44331342025273,0.811512834825538,1.87853910777315,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,2.34434894420094,0,0.205654985406647,0,0,0.672786506072164,0.87192013766656,0.2933531432838,0.387815147273333,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0,0,1.20575750823834,0.871533458600294,1.49959486773086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,2.82190430954022,0.500170521059677,0.271265023699736,0.831883446123229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0.120859449591622,0.40101294060657,0,0.229628896329213,0.546273504020151,1.57349297951309,0,0,0,0,0.105551628892876,0,0.510281115829547,0.215915916102139,0,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0.824328093181778,0.0915694648183434,0,0,0,0,0.193341436584244,0.462145851343933,0.460511024178389,0,0.644521469209642,0.145016693914229,0.170453254832202,0.267096106940212,0,0,0,0,0,0.31481234683064,0.6970372701606,1.23213432070436,0.532306030317022,0,1.11194531462352,1.14499909393593,0,0.632758849437452,0,0,0,2.86382923133343,2.35484592059769,0.359744915166629,0.274537029736055,0.117812402345686,0.606547444719948,0,0.421258456238981,0,0.243713489631284,0,0.682499557039929,0,0,2.2054613741845,0.66343897524122,0,0,0.655894752046633,0.405820753925408,0.6196469961995,0.281695602532241,0.143411352204052,0.0982490410131212,0.7133421029625,1.41904425628239,0,0,0,0.349934720244983,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0.36408156524854,0,2.84136146806413,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.0898683511473268,0.358042349351218,0,0.591860433821602,0,0,0,1.20598527610407,0,0,0,0,0,0.254253650292766,0,0,0,0,3.54296554325536,1.32656082487949,0,0,0,1.09692698576986,0,0,0.923403102045565,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.353830258013357,0,0,0,0,0.067401132980677,0.802577647298789,0.234264445725339,0,0.391329237864179,0,0.394584402849391,1.20990716048664,0,0.63186579628488,0,0.207376382794494,0,0.661983911750998,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0.451961481561065,0.274083849293502,0,1.01297273529406,0,0.561111741760736,0.85381197895741,0,0,0.572682980829578,0,0,0,0,0,0,1.22397861163586,0,0.600420288709789,0,0,0,0,0.837847203816763,0,0.717873024576814,0,0,0.446342914883745,0.739018197353989,0,0,0,0,0,0,0,0,0.136203406111576,0,0.137539436597234,0.83088067605837,0,0,0.485996453264197,0,0.630445658393585,1.78345599658994,0,0.35857467866569,0,0.714695326373367,0,0,0,0,0,0,0,0.340776043570843,1.13312091520126,0.293104467356165,0,0,0,0.342173675768659,0,0.320362237703084,2.04365596629566,0,0,0,0,0,0,0,0.612691153526923,0,0,0.886068179966986,0.732157589411779,0.500763722825999,0.573409195690071,0,0.0620964029413835,0.691743174681154,0.249960815924213,0.454947352624943,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0.302461847526478,0.310874401165561,0.147855149989634,0.477890301491107,0,0.310525913752519,0,0.53168342911599,0,0.601030435988874,1.90402606084398,1.62748293281865,0.909243296012797,0.644463342254931,0,0.796191777397232,0,0,0,0,0,0,0,0.453411851024545,0.231522474323834,0,2.14906609297785,0,0.657852148736121,0.353378291891762,0,0.168942440653073,0,0,0,0.276516872303462,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86264752779733,1.41696576325585,0.478901577171454,0.41023272848151,0.252071696221718,0.622415272177961,0.322951291263702,0,0,0,0,0,0.381382095467167,0,0.596748666348824,0.82731361184183,0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| ||
|short_description=p5@RARB | |short_description=p5@RARB | ||
}} | }} |
Latest revision as of 20:32, 17 September 2015
Short description: | p5@RARB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RARB_5end |
Coexpression cluster: | NA |
Association with transcript: | 41bp_to_NM_000965, uc003cdh.2_5end |
EntrezGene: | RARB |
HGNC: | 9865 |
UniProt: | F1D8S6P10826 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the carotid artery | 2.86e-10 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 8.07e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 8.44e-18 | 4 |
striatum | 8.44e-18 | 4 |
ventral part of telencephalon | 8.44e-18 | 4 |
future corpus striatum | 8.44e-18 | 4 |
caudate-putamen | 8.94e-14 | 3 |
dorsal striatum | 8.94e-14 | 3 |
carotid artery segment | 2.86e-10 | 2 |
telencephalic nucleus | 3.31e-10 | 7 |
caudate nucleus | 8.62e-10 | 2 |
future caudate nucleus | 8.62e-10 | 2 |
brachiocephalic artery | 8.07e-09 | 2 |
brachiocephalic vasculature | 8.07e-09 | 2 |
pre-chordal neural plate | 1.01e-08 | 61 |
epithelium | 2.63e-08 | 306 |
cell layer | 3.73e-08 | 309 |
basal ganglion | 6.05e-08 | 9 |
neural nucleus | 6.05e-08 | 9 |
nuclear complex of neuraxis | 6.05e-08 | 9 |
nucleus of brain | 6.05e-08 | 9 |
aggregate regional part of brain | 6.05e-08 | 9 |
collection of basal ganglia | 6.05e-08 | 9 |
cerebral subcortex | 6.05e-08 | 9 |
tube | 4.18e-07 | 192 |
systemic artery | 4.68e-07 | 33 |
systemic arterial system | 4.68e-07 | 33 |
regional part of telencephalon | 4.98e-07 | 32 |
cerebral hemisphere | 4.98e-07 | 32 |
unilaminar epithelium | 8.71e-07 | 148 |