FFCP PHASE1:Hg19::chr3:149530469..149530547,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11342 | |EntrezGene=11342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10057 | |HGNC=10057 | ||
|TSSclassifier=strong | |||
|UniProt=O43567 | |UniProt=O43567 | ||
|association_with_transcript=0bp_to_ENST00000392894,NM_007282,NM_183381,uc003exn.3,uc003exp.3_5end | |association_with_transcript=0bp_to_ENST00000392894,NM_007282,NM_183381,uc003exn.3,uc003exp.3_5end | ||
|cluster_id=chr3:149530469..149530547,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_2_at_RNF13_5end | |description=CAGE_peak_2_at_RNF13_5end | ||
|id=chr3:149530469..149530547,+ | |id=chr3:149530469..149530547,+ | ||
|ontology_enrichment_celltype=CL:0000738!5.36e-33!140;CL:0002087!5.14e-32!119;CL:0002009!7.14e-32!65;CL:0002194!2.10e-31!63;CL:0000576!2.10e-31!63;CL:0000040!2.10e-31!63;CL:0000559!2.10e-31!63;CL:0000766!1.38e-30!76;CL:0000557!1.09e-27!71;CL:0000860!1.37e-27!45;CL:0002031!3.34e-27!124;CL:0002057!2.24e-26!42;CL:0000839!3.56e-25!70;CL:0000063!9.72e-21!578;CL:0000037!2.24e-19!172;CL:0000566!2.24e-19!172;CL:0002032!7.43e-18!165;CL:0000837!7.43e-18!165;CL:0000988!7.56e-18!182;CL:0000763!1.96e-13!112;CL:0000049!1.96e-13!112;CL:0000003!3.37e-09!722;CL:0000548!1.07e-08!679;CL:0000004!1.07e-08!679;CL:0000255!1.07e-08!679;CL:0000012!1.12e-08!682;CL:0000134!6.38e-08!358;CL:0000223!2.24e-07!59;CL:0000066!2.57e-07!254;CL:0002076!2.66e-07!43 | |ontology_enrichment_celltype=CL:0000738!5.36e-33!140;CL:0002087!5.14e-32!119;CL:0002009!7.14e-32!65;CL:0002194!2.10e-31!63;CL:0000576!2.10e-31!63;CL:0000040!2.10e-31!63;CL:0000559!2.10e-31!63;CL:0000766!1.38e-30!76;CL:0000557!1.09e-27!71;CL:0000860!1.37e-27!45;CL:0002031!3.34e-27!124;CL:0002057!2.24e-26!42;CL:0000839!3.56e-25!70;CL:0000063!9.72e-21!578;CL:0000037!2.24e-19!172;CL:0000566!2.24e-19!172;CL:0002032!7.43e-18!165;CL:0000837!7.43e-18!165;CL:0000988!7.56e-18!182;CL:0000763!1.96e-13!112;CL:0000049!1.96e-13!112;CL:0000003!3.37e-09!722;CL:0000548!1.07e-08!679;CL:0000004!1.07e-08!679;CL:0000255!1.07e-08!679;CL:0000012!1.12e-08!682;CL:0000134!6.38e-08!358;CL:0000223!2.24e-07!59;CL:0000066!2.57e-07!254;CL:0002076!2.66e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.28e-20;33!CL:0002057;2.28e-20;33!CL:0000473;3.16e-20;39!CL:0000234;3.16e-20;39!CL:0000576;3.14e-17;48!CL:0000766;7.32e-13;69!CL:0002087;4.78e-09;104!CL:0000738;4.59e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.51e-32,136;CL:0002009,1.35e-31,61;CL:0002087,2.63e-31,115;CL:0002194,3.81e-31,59;CL:0000576,3.81e-31,59;CL:0000040,3.81e-31,59;CL:0000559,3.81e-31,59;CL:0000473,3.34e-30,48;CL:0000234,3.34e-30,48;CL:0000766,4.43e-30,72;CL:0000557,3.53e-27,67;CL:0002031,1.97e-26,120;CL:0000860,2.07e-26,42;CL:0002057,2.07e-26,42;CL:0000839,1.20e-24,66;CL:0000037,5.97e-19,168;CL:0000988,7.83e-18,177;CL:0002032,1.93e-17,161;CL:0000837,1.93e-17,161;CL:0000763,4.21e-13,108;CL:0000049,4.21e-13,108;CL:0000223,1.08e-07,58;CL:0000134,1.27e-07,354;CL:0002076,1.36e-07,42;CL:0000066,1.64e-07,253 | |||
|ontology_enrichment_development_v019=CL:0002057;1.44e-19;42 | |||
|ontology_enrichment_disease=DOID:305!3.83e-08!106 | |ontology_enrichment_disease=DOID:305!3.83e-08!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.34e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0002390!6.97e-26!102;UBERON:0003061!6.97e-26!102;UBERON:0002371!3.68e-24!80;UBERON:0001474!3.63e-23!86;UBERON:0002193!3.80e-23!112;UBERON:0004765!3.41e-18!101;UBERON:0001434!3.41e-18!101;UBERON:0002405!1.56e-16!115;UBERON:0000926!2.91e-08!448;UBERON:0004120!2.91e-08!448;UBERON:0006603!2.91e-08!448;UBERON:0003081!2.52e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.38e-25,98;UBERON:0003061,3.38e-25,98;UBERON:0002371,1.52e-23,76;UBERON:0001474,1.62e-22,82;UBERON:0002193,2.21e-22,108;UBERON:0004765,3.44e-20,90;UBERON:0002405,2.57e-19,93;UBERON:0001434,6.96e-16,100;UBERON:0003081,9.54e-08,203 | |||
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| ||
|short_description=p2@RNF13 | |short_description=p2@RNF13 | ||
}} | }} |
Latest revision as of 22:22, 15 September 2015
Short description: | p2@RNF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RNF13_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000392894, NM_007282, NM_183381, uc003exn.3, uc003exp.3_5end |
EntrezGene: | RNF13 |
HGNC: | 10057 |
UniProt: | O43567 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.51e-32 | 136 |
macrophage dendritic cell progenitor | 1.35e-31 | 61 |
nongranular leukocyte | 2.63e-31 | 115 |
monopoietic cell | 3.81e-31 | 59 |
monocyte | 3.81e-31 | 59 |
monoblast | 3.81e-31 | 59 |
promonocyte | 3.81e-31 | 59 |
defensive cell | 3.34e-30 | 48 |
phagocyte | 3.34e-30 | 48 |
myeloid leukocyte | 4.43e-30 | 72 |
granulocyte monocyte progenitor cell | 3.53e-27 | 67 |
hematopoietic lineage restricted progenitor cell | 1.97e-26 | 120 |
classical monocyte | 2.07e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.07e-26 | 42 |
myeloid lineage restricted progenitor cell | 1.20e-24 | 66 |
hematopoietic stem cell | 5.97e-19 | 168 |
hematopoietic cell | 7.83e-18 | 177 |
hematopoietic oligopotent progenitor cell | 1.93e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.93e-17 | 161 |
myeloid cell | 4.21e-13 | 108 |
common myeloid progenitor | 4.21e-13 | 108 |
endodermal cell | 1.08e-07 | 58 |
mesenchymal cell | 1.27e-07 | 354 |
endo-epithelial cell | 1.36e-07 | 42 |
epithelial cell | 1.64e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.38e-25 | 98 |
blood island | 3.38e-25 | 98 |
bone marrow | 1.52e-23 | 76 |
bone element | 1.62e-22 | 82 |
hemolymphoid system | 2.21e-22 | 108 |
skeletal element | 3.44e-20 | 90 |
immune system | 2.57e-19 | 93 |
skeletal system | 6.96e-16 | 100 |
lateral plate mesoderm | 9.54e-08 | 203 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.34e-08 | 106 |