FFCP PHASE1:Hg19::chr3:139108475..139108518,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9276 | |EntrezGene=9276 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2232 | |HGNC=2232 | ||
|TSSclassifier=strong | |||
|UniProt=B4DZI8,D6RBG7,D6RBZ7,D6R997 | |UniProt=B4DZI8,D6RBG7,D6RBZ7,D6R997 | ||
|association_with_transcript=0bp_to_ENST00000504295,ENST00000507777,ENST00000513274,ENST00000514508,ENST00000515006,uc011bmv.1_5end | |association_with_transcript=0bp_to_ENST00000504295,ENST00000507777,ENST00000513274,ENST00000514508,ENST00000515006,uc011bmv.1_5end | ||
|cluster_id=chr3:139108475..139108518,- | |||
|coexpression_cluster_id=C2721 | |||
|description=CAGE_peak_1_at_COPB2_5end | |description=CAGE_peak_1_at_COPB2_5end | ||
|id=chr3:139108475..139108518,- | |id=chr3:139108475..139108518,- | ||
|ontology_enrichment_celltype=CL:0000055!4.13e-18!180;CL:0000057!3.14e-13!75;CL:0000548!1.43e-12!679;CL:0000004!1.43e-12!679;CL:0000255!1.43e-12!679;CL:0000012!8.58e-12!682;CL:0000680!1.30e-08!57;CL:0000056!1.30e-08!57;CL:0000355!1.30e-08!57;CL:0000144!1.45e-08!625;CL:0002620!2.11e-08!23;CL:0000003!2.51e-08!722;CL:0000048!3.86e-08!430;CL:0000723!4.44e-08!436;CL:0000187!1.35e-07!54;CL:0000034!1.80e-07!444 | |ontology_enrichment_celltype=CL:0000055!4.13e-18!180;CL:0000057!3.14e-13!75;CL:0000548!1.43e-12!679;CL:0000004!1.43e-12!679;CL:0000255!1.43e-12!679;CL:0000012!8.58e-12!682;CL:0000680!1.30e-08!57;CL:0000056!1.30e-08!57;CL:0000355!1.30e-08!57;CL:0000144!1.45e-08!625;CL:0002620!2.11e-08!23;CL:0000003!2.51e-08!722;CL:0000048!3.86e-08!430;CL:0000723!4.44e-08!436;CL:0000187!1.35e-07!54;CL:0000034!1.80e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.05e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.14e-13,76;CL:0002620,2.11e-08,23;CL:0000048,3.38e-08,427;CL:0000723,3.90e-08,433;CL:0000680,4.04e-08,58;CL:0000056,4.04e-08,58;CL:0000355,4.04e-08,58;CL:0000034,1.59e-07,441;CL:0000187,3.92e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.35e-09!83;UBERON:0002329!1.35e-09!83;UBERON:0003077!1.35e-09!83;UBERON:0003059!1.35e-09!83;UBERON:0007282!1.35e-09!83;UBERON:0009618!1.35e-09!83;UBERON:0007285!1.35e-09!83;UBERON:0003102!2.05e-09!95;UBERON:0002199!1.29e-07!45;UBERON:0002416!1.29e-07!45;UBERON:0004290!3.83e-07!70;UBERON:0002097!9.06e-07!40 | |ontology_enrichment_uberon=UBERON:0000914!1.35e-09!83;UBERON:0002329!1.35e-09!83;UBERON:0003077!1.35e-09!83;UBERON:0003059!1.35e-09!83;UBERON:0007282!1.35e-09!83;UBERON:0009618!1.35e-09!83;UBERON:0007285!1.35e-09!83;UBERON:0003102!2.05e-09!95;UBERON:0002199!1.29e-07!45;UBERON:0002416!1.29e-07!45;UBERON:0004290!3.83e-07!70;UBERON:0002097!9.06e-07!40 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.42e-10,99;UBERON:0002199,6.23e-08,46;UBERON:0002416,6.23e-08,46;UBERON:0002097,4.40e-07,41;UBERON:0002329,9.22e-07,71;UBERON:0003059,9.22e-07,71;UBERON:0007282,9.22e-07,71;UBERON:0004290,9.22e-07,71;UBERON:0009618,9.22e-07,71 | |||
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164183563 | ||
|short_description=p1@COPB2 | |short_description=p1@COPB2 | ||
}} | }} |
Latest revision as of 01:49, 25 September 2015
Short description: | p1@COPB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COPB2_5end |
Coexpression cluster: | C2721_Preadipocyte_Smooth_Mast_Fibroblast_Mesenchymal_mesenchymal_Myoblast |
Association with transcript: | 0bp_to_ENST00000504295, ENST00000507777, ENST00000513274, ENST00000514508, ENST00000515006, uc011bmv.1_5end |
EntrezGene: | COPB2 |
HGNC: | 2232 |
UniProt: | B4DZI8D6RBG7D6RBZ7D6R997 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.14e-13 | 76 |
skin fibroblast | 2.11e-08 | 23 |
multi fate stem cell | 3.38e-08 | 427 |
somatic stem cell | 3.90e-08 | 433 |
muscle precursor cell | 4.04e-08 | 58 |
myoblast | 4.04e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.04e-08 | 58 |
stem cell | 1.59e-07 | 441 |
muscle cell | 3.92e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.42e-10 | 99 |
integument | 6.23e-08 | 46 |
integumental system | 6.23e-08 | 46 |
skin of body | 4.40e-07 | 41 |
somite | 9.22e-07 | 71 |
presomitic mesoderm | 9.22e-07 | 71 |
presumptive segmental plate | 9.22e-07 | 71 |
dermomyotome | 9.22e-07 | 71 |
trunk paraxial mesoderm | 9.22e-07 | 71 |