FFCP PHASE1:Hg19::chr2:71680778..71680825,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8291 | |EntrezGene=8291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3097 | |HGNC=3097 | ||
|TSSclassifier=strong | |||
|UniProt=O75923 | |UniProt=O75923 | ||
|association_with_transcript=25bp_to_NM_001130976,NM_001130977,NM_001130978,NM_001130979,NM_001130980,NM_001130981,NM_003494,uc002sie.2,uc002sig.3,uc010fee.2,uc010fef.2,uc010feg.2,uc010feh.2,uc010fei.2,uc010yqx.1_5end | |association_with_transcript=25bp_to_NM_001130976,NM_001130977,NM_001130978,NM_001130979,NM_001130980,NM_001130981,NM_003494,uc002sie.2,uc002sig.3,uc010fee.2,uc010fef.2,uc010feg.2,uc010feh.2,uc010fei.2,uc010yqx.1_5end | ||
|cluster_id=chr2:71680778..71680825,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_DYSF_5end | |description=CAGE_peak_3_at_DYSF_5end | ||
|id=chr2:71680778..71680825,+ | |id=chr2:71680778..71680825,+ | ||
|ontology_enrichment_celltype=CL:0002057!3.83e-18!42;CL:0000860!1.78e-16!45;CL:0000115!5.43e-16!35;CL:0002139!1.74e-15!24;CL:0000766!1.40e-13!76;CL:0000213!3.52e-12!57;CL:0000215!3.52e-12!57;CL:0002194!4.51e-12!63;CL:0000576!4.51e-12!63;CL:0000040!4.51e-12!63;CL:0000559!4.51e-12!63;CL:0000071!6.85e-12!18;CL:0002546!6.85e-12!18;CL:0002078!3.14e-11!44;CL:0002009!4.63e-11!65;CL:0000839!2.31e-10!70;CL:0000557!1.75e-08!71;CL:0000763!4.38e-07!112;CL:0000049!4.38e-07!112;CL:1000413!6.70e-07!9;CL:0000094!8.13e-07!8 | |ontology_enrichment_celltype=CL:0002057!3.83e-18!42;CL:0000860!1.78e-16!45;CL:0000115!5.43e-16!35;CL:0002139!1.74e-15!24;CL:0000766!1.40e-13!76;CL:0000213!3.52e-12!57;CL:0000215!3.52e-12!57;CL:0002194!4.51e-12!63;CL:0000576!4.51e-12!63;CL:0000040!4.51e-12!63;CL:0000559!4.51e-12!63;CL:0000071!6.85e-12!18;CL:0002546!6.85e-12!18;CL:0002078!3.14e-11!44;CL:0002009!4.63e-11!65;CL:0000839!2.31e-10!70;CL:0000557!1.75e-08!71;CL:0000763!4.38e-07!112;CL:0000049!4.38e-07!112;CL:1000413!6.70e-07!9;CL:0000094!8.13e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.69e-24;33!CL:0002057;2.69e-24;33!CL:0002139;4.46e-20;24!CL:0000473;1.04e-17;39!CL:0000234;1.04e-17;39!CL:0000115;1.34e-17;36!CL:0000071;2.79e-15;18!CL:0000576;4.34e-14;48!CL:0002078;4.52e-10;45!CL:0000766;2.51e-09;69!CL:0000213;3.39e-09;58!CL:0000215;3.39e-09;58!CL:1000413;1.11e-08;9!CL:0000094;1.27e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.08e-23,42;CL:0002057,1.08e-23,42;CL:0000473,8.48e-21,48;CL:0000234,8.48e-21,48;CL:0000115,1.35e-20,36;CL:0000766,3.55e-20,72;CL:0002139,4.07e-20,24;CL:0002194,3.95e-17,59;CL:0000576,3.95e-17,59;CL:0000040,3.95e-17,59;CL:0000559,3.95e-17,59;CL:0002009,4.65e-16,61;CL:0000839,1.50e-15,66;CL:0000071,2.55e-15,18;CL:0002546,2.55e-15,18;CL:0002078,5.81e-15,45;CL:0000213,1.22e-14,58;CL:0000215,1.22e-14,58;CL:0000557,2.83e-13,67;CL:0000763,2.53e-12,108;CL:0000049,2.53e-12,108;CL:1000413,1.11e-08,9;CL:0000094,1.43e-08,8;CL:0000738,4.95e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;9.80e-18;42!CL:0002546;2.79e-15;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.47e-17!216;UBERON:0007023!4.91e-16!115;UBERON:0001009!3.51e-15!113;UBERON:0004535!4.30e-14!110;UBERON:0002193!1.08e-12!112;UBERON:0001986!6.85e-12!18;UBERON:0004638!6.85e-12!18;UBERON:0004852!6.85e-12!18;UBERON:0002390!5.75e-10!102;UBERON:0003061!5.75e-10!102;UBERON:0000487!3.79e-09!22;UBERON:0000467!1.00e-08!625;UBERON:0002049!1.02e-08!79;UBERON:0007798!1.02e-08!79;UBERON:0000480!1.46e-08!626;UBERON:0000468!1.97e-08!659;UBERON:0000055!3.99e-08!69;UBERON:0004872!1.11e-07!84;UBERON:0000922!1.16e-07!612;UBERON:0004111!2.23e-07!241;UBERON:0002405!2.76e-07!115;UBERON:0006914!6.41e-07!25;UBERON:0003915!6.70e-07!9;UBERON:0004700!6.70e-07!9;UBERON:0001917!6.70e-07!9;UBERON:0000178!8.84e-07!15;UBERON:0000179!8.84e-07!15;UBERON:0000463!8.84e-07!15;UBERON:0002050!8.99e-07!605;UBERON:0005423!8.99e-07!605 | |ontology_enrichment_uberon=UBERON:0003081!1.47e-17!216;UBERON:0007023!4.91e-16!115;UBERON:0001009!3.51e-15!113;UBERON:0004535!4.30e-14!110;UBERON:0002193!1.08e-12!112;UBERON:0001986!6.85e-12!18;UBERON:0004638!6.85e-12!18;UBERON:0004852!6.85e-12!18;UBERON:0002390!5.75e-10!102;UBERON:0003061!5.75e-10!102;UBERON:0000487!3.79e-09!22;UBERON:0000467!1.00e-08!625;UBERON:0002049!1.02e-08!79;UBERON:0007798!1.02e-08!79;UBERON:0000480!1.46e-08!626;UBERON:0000468!1.97e-08!659;UBERON:0000055!3.99e-08!69;UBERON:0004872!1.11e-07!84;UBERON:0000922!1.16e-07!612;UBERON:0004111!2.23e-07!241;UBERON:0002405!2.76e-07!115;UBERON:0006914!6.41e-07!25;UBERON:0003915!6.70e-07!9;UBERON:0004700!6.70e-07!9;UBERON:0001917!6.70e-07!9;UBERON:0000178!8.84e-07!15;UBERON:0000179!8.84e-07!15;UBERON:0000463!8.84e-07!15;UBERON:0002050!8.99e-07!605;UBERON:0005423!8.99e-07!605 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.79e-15;18!UBERON:0001986;2.79e-15;18!UBERON:0004852;2.79e-15;18!UBERON:0000487;1.49e-12;22!UBERON:0006914;3.59e-10;25!UBERON:0003915;1.11e-08;9!UBERON:0004700;1.11e-08;9!UBERON:0001917;1.11e-08;9!UBERON:0000178;1.34e-08;15!UBERON:0000179;1.34e-08;15!UBERON:0000463;1.34e-08;15!UBERON:0000490;4.40e-08;33 | |||
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| ||
|short_description=p3@DYSF | |short_description=p3@DYSF | ||
}} | }} |
Latest revision as of 07:58, 18 September 2015
Short description: | p3@DYSF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DYSF_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 25bp_to_NM_001130976, NM_001130977, NM_001130978, NM_001130979, NM_001130980, NM_001130981, NM_003494, uc002sie.2, uc002sig.3, uc010fee.2, uc010fef.2, uc010feg.2, uc010feh.2, uc010fei.2, uc010yqx.1_5end |
EntrezGene: | DYSF |
HGNC: | 3097 |
UniProt: | O75923 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.08e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.08e-23 | 42 |
defensive cell | 8.48e-21 | 48 |
phagocyte | 8.48e-21 | 48 |
endothelial cell | 1.35e-20 | 36 |
myeloid leukocyte | 3.55e-20 | 72 |
endothelial cell of vascular tree | 4.07e-20 | 24 |
monopoietic cell | 3.95e-17 | 59 |
monocyte | 3.95e-17 | 59 |
monoblast | 3.95e-17 | 59 |
promonocyte | 3.95e-17 | 59 |
macrophage dendritic cell progenitor | 4.65e-16 | 61 |
myeloid lineage restricted progenitor cell | 1.50e-15 | 66 |
blood vessel endothelial cell | 2.55e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.55e-15 | 18 |
meso-epithelial cell | 5.81e-15 | 45 |
lining cell | 1.22e-14 | 58 |
barrier cell | 1.22e-14 | 58 |
granulocyte monocyte progenitor cell | 2.83e-13 | 67 |
myeloid cell | 2.53e-12 | 108 |
common myeloid progenitor | 2.53e-12 | 108 |
endothelial cell of artery | 1.11e-08 | 9 |
granulocyte | 1.43e-08 | 8 |
leukocyte | 4.95e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.35e-21 | 203 |
hemolymphoid system | 3.51e-18 | 108 |
blood vessel endothelium | 2.55e-15 | 18 |
endothelium | 2.55e-15 | 18 |
cardiovascular system endothelium | 2.55e-15 | 18 |
hematopoietic system | 3.43e-15 | 98 |
blood island | 3.43e-15 | 98 |
mesoderm | 1.62e-14 | 315 |
mesoderm-derived structure | 1.62e-14 | 315 |
presumptive mesoderm | 1.62e-14 | 315 |
circulatory system | 6.52e-13 | 112 |
simple squamous epithelium | 1.40e-12 | 22 |
immune system | 3.46e-12 | 93 |
cardiovascular system | 1.07e-11 | 109 |
squamous epithelium | 3.41e-10 | 25 |
bone marrow | 4.89e-10 | 76 |
adult organism | 2.72e-09 | 114 |
endothelial tube | 1.11e-08 | 9 |
arterial system endothelium | 1.11e-08 | 9 |
endothelium of artery | 1.11e-08 | 9 |
blood | 1.35e-08 | 15 |
haemolymphatic fluid | 1.35e-08 | 15 |
organism substance | 1.35e-08 | 15 |
bone element | 2.38e-08 | 82 |
skeletal element | 2.87e-08 | 90 |