FFCP PHASE1:Hg19::chr2:18479067..18479081,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:18479067..18479081,+ | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_at_chr2:18479067..18479081,+ | |description=CAGE_peak_at_chr2:18479067..18479081,+ | ||
|id=chr2:18479067..18479081,+ | |id=chr2:18479067..18479081,+ | ||
|ontology_enrichment_celltype=CL:0000071!1.01e-25!18;CL:0002546!1.01e-25!18;CL:0002139!5.68e-24!24;CL:0000115!2.28e-19!35;CL:1000413!1.01e-17!9;CL:0002078!2.25e-14!44;CL:0000213!4.29e-14!57;CL:0000215!4.29e-14!57;CL:0000076!1.93e-12!62;CL:0000222!6.58e-12!119;CL:0002543!2.72e-11!6;CL:0002544!7.47e-11!6;CL:0002594!8.04e-11!4;CL:0000220!3.21e-09!246;CL:0002321!4.67e-09!248;CL:0002618!1.01e-08!3 | |ontology_enrichment_celltype=CL:0000071!1.01e-25!18;CL:0002546!1.01e-25!18;CL:0002139!5.68e-24!24;CL:0000115!2.28e-19!35;CL:1000413!1.01e-17!9;CL:0002078!2.25e-14!44;CL:0000213!4.29e-14!57;CL:0000215!4.29e-14!57;CL:0000076!1.93e-12!62;CL:0000222!6.58e-12!119;CL:0002543!2.72e-11!6;CL:0002544!7.47e-11!6;CL:0002594!8.04e-11!4;CL:0000220!3.21e-09!246;CL:0002321!4.67e-09!248;CL:0002618!1.01e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000071;3.09e-31;18!CL:0002543;9.10e-25;6!CL:0002139;3.33e-23;24!CL:1000413;3.23e-16;9!CL:0000115;5.16e-15;36!CL:0002618;3.57e-13;3!CL:0002078;1.12e-11;45!CL:0002568;9.38e-11;1!CL:0000222;1.37e-10;1!CL:0002594;2.68e-10;4!CL:0002557;2.87e-10;1!CL:0000306;7.15e-10;4!CL:0002222;7.15e-10;4!CL:0002224;7.15e-10;4!CL:0000213;3.88e-07;58!CL:0000215;3.88e-07;58!CL:0002544;7.30e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000071,2.20e-31,18;CL:0002546,2.20e-31,18;CL:0002543,7.36e-25,6;CL:0002139,2.59e-23,24;CL:0000115,3.12e-19,36;CL:1000413,2.65e-16,9;CL:0002078,3.85e-15,45;CL:0002618,2.63e-13,3;CL:0000222,2.09e-12,121;CL:0000213,1.81e-11,58;CL:0000215,1.81e-11,58;CL:0002568,9.84e-11,1;CL:0002594,2.75e-10,4;CL:0002557,3.61e-10,1;CL:0000306,8.19e-10,4;CL:0002222,8.19e-10,4;CL:0002224,8.19e-10,4;CL:0000076,2.85e-08,63;CL:0002321,1.14e-07,250;CL:0002544,5.75e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;3.09e-31;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.01e-25!18;UBERON:0004638!1.01e-25!18;UBERON:0004852!1.01e-25!18;UBERON:0000487!2.49e-20!22;UBERON:0001981!7.73e-20!60;UBERON:0007500!7.73e-20!60;UBERON:0004537!7.73e-20!60;UBERON:0006965!7.73e-20!60;UBERON:0000055!1.87e-19!69;UBERON:0002049!5.13e-19!79;UBERON:0007798!5.13e-19!79;UBERON:0003915!1.01e-17!9;UBERON:0004700!1.01e-17!9;UBERON:0001917!1.01e-17!9;UBERON:0006914!1.99e-17!25;UBERON:0004872!6.82e-16!84;UBERON:0001637!5.98e-15!42;UBERON:0003509!5.98e-15!42;UBERON:0004572!5.98e-15!42;UBERON:0004535!1.62e-13!110;UBERON:0001009!6.17e-13!113;UBERON:0003914!4.98e-11!118;UBERON:0001310!8.04e-11!4;UBERON:0000483!1.09e-09!309;UBERON:0000119!1.80e-09!312;UBERON:0000025!2.47e-09!194;UBERON:0004111!1.77e-08!241;UBERON:0000490!1.20e-07!138;UBERON:0001638!2.38e-07!9;UBERON:0003920!2.38e-07!9;UBERON:0004582!2.38e-07!9 | |ontology_enrichment_uberon=UBERON:0001986!1.01e-25!18;UBERON:0004638!1.01e-25!18;UBERON:0004852!1.01e-25!18;UBERON:0000487!2.49e-20!22;UBERON:0001981!7.73e-20!60;UBERON:0007500!7.73e-20!60;UBERON:0004537!7.73e-20!60;UBERON:0006965!7.73e-20!60;UBERON:0000055!1.87e-19!69;UBERON:0002049!5.13e-19!79;UBERON:0007798!5.13e-19!79;UBERON:0003915!1.01e-17!9;UBERON:0004700!1.01e-17!9;UBERON:0001917!1.01e-17!9;UBERON:0006914!1.99e-17!25;UBERON:0004872!6.82e-16!84;UBERON:0001637!5.98e-15!42;UBERON:0003509!5.98e-15!42;UBERON:0004572!5.98e-15!42;UBERON:0004535!1.62e-13!110;UBERON:0001009!6.17e-13!113;UBERON:0003914!4.98e-11!118;UBERON:0001310!8.04e-11!4;UBERON:0000483!1.09e-09!309;UBERON:0000119!1.80e-09!312;UBERON:0000025!2.47e-09!194;UBERON:0004111!1.77e-08!241;UBERON:0000490!1.20e-07!138;UBERON:0001638!2.38e-07!9;UBERON:0003920!2.38e-07!9;UBERON:0004582!2.38e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.09e-31;18!UBERON:0001986;3.09e-31;18!UBERON:0004852;3.09e-31;18!UBERON:0000487;2.14e-25;22!UBERON:0000490;2.17e-23;33!UBERON:0006914;3.07e-22;25!UBERON:0010260;1.16e-16;9!UBERON:0001638;1.31e-16;9!UBERON:0003920;1.31e-16;9!UBERON:0004582;1.31e-16;9!UBERON:0003915;3.23e-16;9!UBERON:0004700;3.23e-16;9!UBERON:0001917;3.23e-16;9!UBERON:0007500;1.79e-12;56!UBERON:0001981;1.79e-12;56!UBERON:0004537;1.79e-12;56!UBERON:0002049;3.70e-11;75!UBERON:0007798;3.70e-11;75!UBERON:0001310;2.68e-10;4!UBERON:0010077;7.15e-10;4!UBERON:0005389;7.15e-10;4!UBERON:0000484;7.15e-10;4!UBERON:0000965;7.15e-10;4!UBERON:0001803;7.15e-10;4!UBERON:0000055;1.65e-09;65!UBERON:0001637;7.59e-09;42!UBERON:0003509;7.59e-09;42!UBERON:0004572;7.59e-09;42!UBERON:0002066;2.94e-08;5!UBERON:0003914;2.35e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.20e-31,18;UBERON:0001986,2.20e-31,18;UBERON:0004852,2.20e-31,18;UBERON:0000487,1.63e-25,22;UBERON:0006914,2.41e-22,25;UBERON:0007500,3.30e-20,59;UBERON:0001981,3.30e-20,59;UBERON:0004537,3.30e-20,59;UBERON:0006965,3.30e-20,59;UBERON:0002049,1.71e-17,78;UBERON:0007798,1.71e-17,78;UBERON:0000055,2.79e-17,68;UBERON:0010260,9.72e-17,9;UBERON:0001638,1.14e-16,9;UBERON:0003920,1.14e-16,9;UBERON:0004582,1.14e-16,9;UBERON:0003915,2.65e-16,9;UBERON:0004700,2.65e-16,9;UBERON:0001917,2.65e-16,9;UBERON:0004872,8.25e-14,83;UBERON:0000490,5.71e-13,148;UBERON:0001637,9.27e-13,42;UBERON:0003509,9.27e-13,42;UBERON:0004572,9.27e-13,42;UBERON:0004535,6.53e-12,109;UBERON:0001009,1.55e-11,112;UBERON:0003914,5.76e-11,117;UBERON:0001310,2.75e-10,4;UBERON:0010077,8.19e-10,4;UBERON:0005389,8.19e-10,4;UBERON:0000484,8.19e-10,4;UBERON:0002546,8.19e-10,4;UBERON:0000965,8.19e-10,4;UBERON:0001803,8.19e-10,4;UBERON:0003073,8.19e-10,4;UBERON:0005426,8.19e-10,4;UBERON:0002066,2.45e-08,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0.364295288292542,0,0,0,0,0,0,0,0.993812036833525,0.860234595106124,0.347140501607594,1.69592382577203,2.51699661725944,1.10047216776027,0.835979866147242,0,0,0.66944122552934,0.402829317109147,0,0,1.47065232138347,0,4.91148505562439,1.57170560838319,0.450445921933289,3.06633274931766,0,2.19842092716489,0,0,0,0.496971951695318,0.506522046658319,0.132409180813219,0,0,0,0,0.49333509683432,0,0.269421344139376,0,0,0,0,0,1.1409436430889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13432183160021,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402115889646523,0,0,0,1.44331342025273,0.115930404975077,1.05667824812239,0,0,0.190254152234598,0,0,0,0,0,0,0.839910640994298,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.26596662000667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34013012267479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.826424576804891,0.576570202095319,11.357531412018,0,0,0,0,0,0,0,0,1.00187420719394,0,1.2655176988749,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,2.23201414658974,0.6196469961995,0.281695602532241,0,0,5.7067368237,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0.443430153536676,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.6240656579978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0.874813840149763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79339561045614,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0.53168342911599,0,0,0,0.406870733204662,0,0,0,0,0,0,0,2.52369796457302,0,0,0.260994291965212,0,0.694567422971502,0,0.179088841081487,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.504143392443436,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0.364295288292542,0,0,0,0,0,0,0,0.993812036833525,0.860234595106124,0.347140501607594,1.69592382577203,2.51699661725944,1.10047216776027,0.835979866147242,0,0,0.66944122552934,0.402829317109147,0,0,1.47065232138347,0,4.91148505562439,1.57170560838319,0.450445921933289,3.06633274931766,0,2.19842092716489,0,0,0,0.496971951695318,0.506522046658319,0.132409180813219,0,0,0,0,0.49333509683432,0,0.269421344139376,0,0,0,0,0,1.1409436430889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13432183160021,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402115889646523,0,0,0,1.44331342025273,0.115930404975077,1.05667824812239,0,0,0.190254152234598,0,0,0,0,0,0,0.839910640994298,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.26596662000667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34013012267479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.826424576804891,0.576570202095319,11.357531412018,0,0,0,0,0,0,0,0,1.00187420719394,0,1.2655176988749,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,2.23201414658974,0.6196469961995,0.281695602532241,0,0,5.7067368237,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0.443430153536676,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.6240656579978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0.874813840149763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79339561045614,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0.53168342911599,0,0,0,0.406870733204662,0,0,0,0,0,0,0,2.52369796457302,0,0,0.260994291965212,0,0.694567422971502,0,0.179088841081487,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.504143392443436,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:18479067..18479081,+ | |short_description=p@chr2:18479067..18479081,+ | ||
}} | }} |
Latest revision as of 04:05, 29 July 2015
Short description: | p@chr2:18479067..18479081, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:18479067..18479081, + |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood vessel endothelial cell | 2.20e-31 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.20e-31 | 18 |
vein endothelial cell | 7.36e-25 | 6 |
endothelial cell of vascular tree | 2.59e-23 | 24 |
endothelial cell | 3.12e-19 | 36 |
endothelial cell of artery | 2.65e-16 | 9 |
meso-epithelial cell | 3.85e-15 | 45 |
endothelial cell of umbilical vein | 2.63e-13 | 3 |
mesodermal cell | 2.09e-12 | 121 |
lining cell | 1.81e-11 | 58 |
barrier cell | 1.81e-11 | 58 |
mesenchymal stem cell of Wharton's jelly | 9.84e-11 | 1 |
smooth muscle cell of the umbilical artery | 2.75e-10 | 4 |
fibroblast of pulmonary artery | 3.61e-10 | 1 |
crystallin accumulating cell | 8.19e-10 | 4 |
vertebrate lens cell | 8.19e-10 | 4 |
lens epithelial cell | 8.19e-10 | 4 |
squamous epithelial cell | 2.85e-08 | 63 |
embryonic cell | 1.14e-07 | 250 |
aortic endothelial cell | 5.75e-07 | 6 |