FFCP PHASE1:Hg19::chr7:76139925..76139937,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80761 | |EntrezGene=80761 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21444 | |HGNC=21444 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000394849_5end | |association_with_transcript=0bp_to_ENST00000394849_5end | ||
|cluster_id=chr7:76139925..76139937,+ | |||
|coexpression_cluster_id=C1193 | |||
|description=CAGE_peak_2_at_UPK3B_5end | |description=CAGE_peak_2_at_UPK3B_5end | ||
|id=chr7:76139925..76139937,+ | |id=chr7:76139925..76139937,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.14e-21!254;CL:0002076!2.74e-16!43;CL:0000223!1.71e-10!59;CL:0002251!2.55e-09!21;CL:0000077!4.60e-09!19;CL:0000076!1.81e-08!62;CL:0002368!9.16e-07!13 | |ontology_enrichment_celltype=CL:0000066!2.14e-21!254;CL:0002076!2.74e-16!43;CL:0000223!1.71e-10!59;CL:0002251!2.55e-09!21;CL:0000077!4.60e-09!19;CL:0000076!1.81e-08!62;CL:0002368!9.16e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000244;1.73e-10;4!CL:0000731;1.73e-10;4!CL:0000077;2.14e-09;19!CL:0002586;7.46e-08;3!CL:0002251;1.47e-07;20!CL:0002621;4.15e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.59e-16,253;CL:0000244,1.52e-10,4;CL:0000731,1.52e-10,4;CL:0000077,2.10e-09,19;CL:0002076,1.05e-08,42;CL:0002586,7.30e-08,3;CL:0002251,1.47e-07,20;CL:0002621,4.50e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.71e-14!106;DOID:0050687!2.68e-11!143;DOID:299!5.21e-11!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.11e-13;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.71e-13,25;DOID:305,3.69e-10,106;DOID:0050687,4.20e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.70e-18!169;UBERON:0000925!4.70e-18!169;UBERON:0006595!4.70e-18!169;UBERON:0001004!1.55e-12!72;UBERON:0001007!3.60e-12!155;UBERON:0001555!3.60e-12!155;UBERON:0007026!3.60e-12!155;UBERON:0000077!6.90e-12!130;UBERON:0004921!1.71e-10!129;UBERON:0004185!1.71e-10!129;UBERON:0000065!2.46e-10!53;UBERON:0005911!2.91e-09!82;UBERON:0004923!1.47e-08!57;UBERON:0000344!3.19e-08!12;UBERON:0005910!5.42e-08!6;UBERON:0001041!8.29e-08!98;UBERON:0005181!9.28e-08!35;UBERON:0000161!1.76e-07!35;UBERON:0000365!2.99e-07!5;UBERON:0005178!4.57e-07!34;UBERON:0002224!4.57e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;3.27e-12;5!UBERON:0000486;2.95e-11;12!UBERON:0005910;4.18e-10;6!UBERON:0000305;8.09e-09;7!UBERON:0005631;3.13e-08;10!UBERON:0000158;3.13e-08;10!UBERON:0001781;7.46e-08;3!UBERON:0001782;7.46e-08;3!UBERON:0000344;1.93e-07;20!UBERON:0001949;4.15e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,3.56e-12,5;UBERON:0005910,4.48e-10,6;UBERON:0004923,9.50e-10,66;UBERON:0005631,1.38e-09,14;UBERON:0000158,1.38e-09,14;UBERON:0000305,7.45e-09,7;UBERON:0004119,1.52e-08,160;UBERON:0000925,1.52e-08,160;UBERON:0006595,1.52e-08,160;UBERON:0001782,7.30e-08,3;UBERON:0005424,7.30e-08,3;UBERON:0004871,1.09e-07,8;UBERON:0000344,2.41e-07,20;UBERON:0001949,4.50e-07,3 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,2.18441372130172,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47705797305722,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,2.5540919722054,7.65020105414339,5.56176664176644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,1.09098448236334,2.86804595389004,0,0.132529768321485,0.116193942869518,0.10366105501537,1.51392510525377,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0.134831308160164,0,0,0,0,0.8231480226628,0,0,0,0,0,2.33678033231916,0,0.219500570817251,0,0.402115889646523,0.185176890317059,0,0,0,0,0,0,0,0,21.3355187449004,11.1603201072333,0,0,0,0.93733833986777,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.83742380354924,4.35766729300147,26.6927886456092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,1.81434175997808,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0.200506470303285,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89835287767695,12.7925711822885,1.30151357865721,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,0.510450849978337,1.71968227454435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63577591633371,5.3624182042863,0,0.0941438007767792,19.8032471428766,1.68471475667626,54.5419088850111,10.3375530093132,0,0,0,0,0,0,0,0,0.427296284509893,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0.284136146806413,7.63982351160608,115.816225524729,53.7531228673656,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,2.24670877868317,0.179021174675609,0,4.24166644238815,0,0,0,0,0,0,0,0,2.61724931056649,0,16.7835254055235,0,0,0.173624994933292,0,0,0,0,0,0,0,1.81250867562184,1.38510465306835,0,0,0,0.108647371922008,1.27600463892768,0,0,0,0,0,0,0,0,0,0,0,29.2186726604874,0.848118428603645,0,0,0.353830258013357,0,0,0,0,0.134802265961354,2.40773294189637,0,0,23.2840896529187,0,0,0,0,0.126373159256976,0,0,0.664653872707185,0.661983911750998,0,0,2.27687636823834,0,26.554639965275,8.52533857505085,0,0.52418000472609,0.171986032471617,0.19351266257817,0.146178634172371,0.164230914106418,42.772156271393,0.0882561266915003,0,0,0,0,0.782205530939212,3.28651163031288,0.85381197895741,2.19790570540343,10.3745100350956,0,0,0,0,1.41416420770077,0.67952103036807,0.836822770498666,0,0,0,0,0,0,0,0.558564802544508,0,0,59.7040211491983,0,0.446342914883745,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0.550157746388935,0,0,0,0,2.0126081255956,0,0.996637174564964,0,0,0.575745591958336,0.714695326373367,0,9.66220443088049,0,0,0,0,0,0,0,0,0,0,0,0.513260513652988,2.11444506695002,6.0868825163586,1.72924735609633,4.97086866416635,0,0,0,0,0,0,0,0,0,0,0,0,2.29363678276028,1.44207766997908,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0.601030435988874,0.761610424337591,0,0,0.214821114084977,0,0,0,0,0,0,0.385239660814607,11.7942875256209,7.04684588306071,0.226705925512272,0,0,0,21.6161013012681,25.6562338007087,0,57.1025553281908,2.36519416914302,0.256241518587947,0.690860683462397,0,0,0,0,0,0,0.245772908753719,1.05656061679314,0,0,0,0,0,0.139879507719444,2.48830904013189,2.81367616868034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55184068102667,0.235939446695481,1.10057159113007,0.462102664601353,0,0,0,0.676892955143315,0,0,0,0,1.03499260351932,0,0,0,0,0,0,0,0,2.93853583571069,0,0,0,0,0.177404740325278,0,0,0,0,0.236387681767936,0,0.863424021355654,0,0.560544326627578,0,2.15927591218621,0,0.142953088353313,0,0.464965701472501,0,0,0.828864656652147,0,0,0.430227358820278,0,0,0,5.72767171360125,0,0,9.50771170281235,0.098150233615243,14.020561372961,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0.218559560503957,0,0.735444965261716,0,0,0,0,0,0,0.0644578879735772,0,0.535661815816973,0,0.0802413666891683,3.65168194123259,0,0,0.157771562193185,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.227336094654718,0.803892390468535,0,0,23.8822059729099,1.1903221573187,0.193766729508018,0.248298857183432,0,0,0,5.87835219321796,11.9781655379848,25.1896678274557,2.00822175099494,0.332660356546013,1.05824249194267,0.640364075266293,0,0,30.5033225124491,0.122241444182866,0,0.665756774185513,0.201273793591026,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,2.18441372130172,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47705797305722,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,2.5540919722054,7.65020105414339,5.56176664176644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,1.09098448236334,2.86804595389004,0,0.132529768321485,0.116193942869518,0.10366105501537,1.51392510525377,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0.134831308160164,0,0,0,0,0.8231480226628,0,0,0,0,0,2.33678033231916,0,0.219500570817251,0,0.402115889646523,0.185176890317059,0,0,0,0,0,0,0,0,21.3355187449004,11.1603201072333,0,0,0,0.93733833986777,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.83742380354924,4.35766729300147,26.6927886456092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,1.81434175997808,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0.200506470303285,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.89835287767695,12.7925711822885,1.30151357865721,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,0.510450849978337,1.71968227454435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63577591633371,5.3624182042863,0,0.0941438007767792,19.8032471428766,1.68471475667626,54.5419088850111,10.3375530093132,0,0,0,0,0,0,0,0,0.427296284509893,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0.284136146806413,7.63982351160608,115.816225524729,53.7531228673656,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,2.24670877868317,0.179021174675609,0,4.24166644238815,0,0,0,0,0,0,0,0,2.61724931056649,0,16.7835254055235,0,0,0.173624994933292,0,0,0,0,0,0,0,1.81250867562184,1.38510465306835,0,0,0,0.108647371922008,1.27600463892768,0,0,0,0,0,0,0,0,0,0,0,29.2186726604874,0.848118428603645,0,0,0.353830258013357,0,0,0,0,0.134802265961354,2.40773294189637,0,0,23.2840896529187,0,0,0,0,0.126373159256976,0,0,0.664653872707185,0.661983911750998,0,0,2.27687636823834,0,26.554639965275,8.52533857505085,0,0.52418000472609,0.171986032471617,0.19351266257817,0.146178634172371,0.164230914106418,42.772156271393,0.0882561266915003,0,0,0,0,0.782205530939212,3.28651163031288,0.85381197895741,2.19790570540343,10.3745100350956,0,0,0,0,1.41416420770077,0.67952103036807,0.836822770498666,0,0,0,0,0,0,0,0.558564802544508,0,0,59.7040211491983,0,0.446342914883745,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0.550157746388935,0,0,0,0,2.0126081255956,0,0.996637174564964,0,0,0.575745591958336,0.714695326373367,0,9.66220443088049,0,0,0,0,0,0,0,0,0,0,0,0.513260513652988,2.11444506695002,6.0868825163586,1.72924735609633,4.97086866416635,0,0,0,0,0,0,0,0,0,0,0,0,2.29363678276028,1.44207766997908,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0.601030435988874,0.761610424337591,0,0,0.214821114084977,0,0,0,0,0,0,0.385239660814607,11.7942875256209,7.04684588306071,0.226705925512272,0,0,0,21.6161013012681,25.6562338007087,0,57.1025553281908,2.36519416914302,0.256241518587947,0.690860683462397,0,0,0,0,0,0,0.245772908753719,1.05656061679314,0,0,0,0,0,0.139879507719444,2.48830904013189,2.81367616868034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55184068102667,0.235939446695481,1.10057159113007,0.462102664601353,0,0,0,0.676892955143315,0,0,0,0,1.03499260351932,0,0,0,0,0,0,0,0,2.93853583571069,0,0,0,0,0.177404740325278,0,0,0,0,0.236387681767936,0,0.863424021355654,0,0.560544326627578,0,2.15927591218621,0,0.142953088353313,0,0.464965701472501,0,0,0.828864656652147,0,0,0.430227358820278,0,0,0,5.72767171360125,0,0,9.50771170281235,0.098150233615243,14.020561372961,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0.218559560503957,0,0.735444965261716,0,0,0,0,0,0,0.0644578879735772,0,0.535661815816973,0,0.0802413666891683,3.65168194123259,0,0,0.157771562193185,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.227336094654718,0.803892390468535,0,0,23.8822059729099,1.1903221573187,0.193766729508018,0.248298857183432,0,0,0,5.87835219321796,11.9781655379848,25.1896678274557,2.00822175099494,0.332660356546013,1.05824249194267,0.640364075266293,0,0,30.5033225124491,0.122241444182866,0,0.665756774185513,0.201273793591026,0 | ||
|short_description=p2@UPK3B | |short_description=p2@UPK3B | ||
}} | }} |
Latest revision as of 14:09, 19 September 2015
Short description: | p2@UPK3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_UPK3B_5end |
Coexpression cluster: | C1193_mesothelioma_Mesothelial_Retinal_clear_amniotic_serous_Urothelial |
Association with transcript: | 0bp_to_ENST00000394849_5end |
EntrezGene: | UPK3B |
HGNC: | 21444 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.59e-16 | 253 |
transitional epithelial cell | 1.52e-10 | 4 |
urothelial cell | 1.52e-10 | 4 |
mesothelial cell | 2.10e-09 | 19 |
endo-epithelial cell | 1.05e-08 | 42 |
retinal pigment epithelial cell | 7.30e-08 | 3 |
epithelial cell of alimentary canal | 1.47e-07 | 20 |
gingival epithelial cell | 4.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
urothelium | 3.56e-12 | 5 |
transitional epithelium | 4.48e-10 | 6 |
organ component layer | 9.50e-10 | 66 |
extraembryonic membrane | 1.38e-09 | 14 |
membranous layer | 1.38e-09 | 14 |
amnion | 7.45e-09 | 7 |
endoderm-derived structure | 1.52e-08 | 160 |
endoderm | 1.52e-08 | 160 |
presumptive endoderm | 1.52e-08 | 160 |
pigmented layer of retina | 7.30e-08 | 3 |
presumptive retinal pigmented epithelium | 7.30e-08 | 3 |
somatic layer of lateral plate mesoderm | 1.09e-07 | 8 |
mucosa | 2.41e-07 | 20 |
gingival epithelium | 4.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.71e-13 | 25 |
carcinoma | 3.69e-10 | 106 |
cell type cancer | 4.20e-07 | 143 |