FFCP PHASE1:Hg19::chr7:45953215..45953229,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:45953215..45953229,- | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_at_chr7:45953215..45953229,- | |description=CAGE_peak_at_chr7:45953215..45953229,- | ||
|id=chr7:45953215..45953229,- | |id=chr7:45953215..45953229,- | ||
|ontology_enrichment_celltype=CL:0000057!8.72e-10!75;CL:0000055!1.10e-09!180;CL:0002620!1.80e-09!23;CL:0000153!1.17e-07!9;CL:0000447!1.17e-07!9;CL:0002334!1.32e-07!12;CL:0002595!5.82e-07!5 | |ontology_enrichment_celltype=CL:0000057!8.72e-10!75;CL:0000055!1.10e-09!180;CL:0002620!1.80e-09!23;CL:0000153!1.17e-07!9;CL:0000447!1.17e-07!9;CL:0002334!1.32e-07!12;CL:0002595!5.82e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.04e-20;9!CL:0000447;2.04e-20;9!CL:0000138;1.63e-16;6!CL:0000327;4.21e-15;15!CL:0002620;3.51e-14;23!CL:0000499;5.25e-14;28!CL:0002595;6.46e-12;5!CL:0000135;1.34e-11;3!CL:0000388;1.34e-11;3!CL:0002589;4.30e-08;2!CL:0000359;4.56e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.81e-20,9;CL:0000447,1.81e-20,9;CL:0000058,1.47e-16,6;CL:0000138,1.47e-16,6;CL:0000327,4.49e-15,15;CL:0002620,5.38e-14,23;CL:0000499,5.61e-14,28;CL:0000057,3.15e-12,76;CL:0002595,1.10e-11,5;CL:0000135,1.42e-11,3;CL:0000388,1.42e-11,3;CL:0002589,3.48e-08,2;CL:0000359,2.10e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!4.44e-07!5;DOID:450!4.44e-07!5;DOID:66!4.44e-07!5;DOID:423!4.44e-07!5;DOID:0080000!4.44e-07!5;DOID:11722!4.44e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;5.69e-12;5!DOID:450;5.69e-12;5!DOID:66;5.69e-12;5!DOID:423;5.69e-12;5!DOID:0080000;5.69e-12;5!DOID:11722;5.69e-12;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.00e-12,5;DOID:450,9.00e-12,5;DOID:66,9.00e-12,5;DOID:423,9.00e-12,5;DOID:0080000,9.00e-12,5;DOID:11722,9.00e-12,5 | |||
|ontology_enrichment_uberon=UBERON:0003834!5.82e-07!5;UBERON:0001533!5.82e-07!5;UBERON:0003688!6.91e-07!6;UBERON:0002358!6.91e-07!6;UBERON:0003684!6.91e-07!6;UBERON:0001178!6.91e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;6.46e-12;5!UBERON:0001533;6.46e-12;5!UBERON:0007846;1.34e-11;3!UBERON:0000043;1.34e-11;3!UBERON:0007845;1.34e-11;3!UBERON:0002097;5.50e-09;41!UBERON:0003513;1.61e-08;7!UBERON:0001529;4.30e-08;2!UBERON:0007204;4.30e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,1.10e-11,5;UBERON:0001533,1.10e-11,5;UBERON:0007846,1.42e-11,3;UBERON:0000043,1.42e-11,3;UBERON:0007845,1.42e-11,3;UBERON:0002097,2.83e-10,41;UBERON:0002199,7.04e-09,46;UBERON:0002416,7.04e-09,46;UBERON:0003513,2.32e-08,7;UBERON:0001529,3.48e-08,2;UBERON:0007204,3.48e-08,2 | |||
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| ||
|short_description=p@chr7:45953215..45953229,- | |short_description=p@chr7:45953215..45953229,- | ||
}} | }} |
Latest revision as of 10:25, 31 July 2015
Short description: | p@chr7:45953215..45953229, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:45953215..45953229, - |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.81e-20 | 9 |
carbohydrate secreting cell | 1.81e-20 | 9 |
chondroblast | 1.47e-16 | 6 |
chondrocyte | 1.47e-16 | 6 |
extracellular matrix secreting cell | 4.49e-15 | 15 |
skin fibroblast | 5.38e-14 | 23 |
stromal cell | 5.61e-14 | 28 |
fibroblast | 3.15e-12 | 76 |
smooth muscle cell of the subclavian artery | 1.10e-11 | 5 |
fibrocyte | 1.42e-11 | 3 |
tendon cell | 1.42e-11 | 3 |
smooth muscle cell of the brachiocephalic vasculature | 3.48e-08 | 2 |
vascular associated smooth muscle cell | 2.10e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
thoracic segment blood vessel | 1.10e-11 | 5 |
subclavian artery | 1.10e-11 | 5 |
dense regular connective tissue | 1.42e-11 | 3 |
tendon | 1.42e-11 | 3 |
regular connective tissue | 1.42e-11 | 3 |
skin of body | 2.83e-10 | 41 |
integument | 7.04e-09 | 46 |
integumental system | 7.04e-09 | 46 |
trunk blood vessel | 2.32e-08 | 7 |
brachiocephalic artery | 3.48e-08 | 2 |
brachiocephalic vasculature | 3.48e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.00e-12 | 5 |
myotonic disease | 9.00e-12 | 5 |
muscle tissue disease | 9.00e-12 | 5 |
myopathy | 9.00e-12 | 5 |
muscular disease | 9.00e-12 | 5 |
myotonic dystrophy | 9.00e-12 | 5 |