FFCP PHASE1:Hg19::chr13:92756353..92756364,+: Difference between revisions
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|id=chr13:92756353..92756364,+
|short_description=p@chr13:92756353..92756364,+
|description=CAGE_peak_at_chr13:92756353..92756364,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:92756353..92756364,+ | |||
|coexpression_cluster_id=C235 | |||
|description=CAGE_peak_at_chr13:92756353..92756364,+ | |||
|id=chr13:92756353..92756364,+ | |||
|ontology_enrichment_celltype=CL:0000159!6.53e-19!2;CL:0000319!2.08e-10!1;CL:0002563!2.18e-10!4;CL:0000313!3.01e-10!1 | |||
|ontology_enrichment_celltype_v019=CL:0002563;3.31e-40;4!CL:0002253;6.96e-21;2!CL:0002231;1.22e-14;3!CL:0002076;9.28e-10;42!CL:0002251;6.17e-09;20!CL:0000039;6.04e-07;7!CL:0000586;6.04e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.31e-40,4;CL:0002253,6.96e-21,2;CL:0002231,1.22e-14,3;CL:0002076,2.59e-09,42;CL:0002251,6.17e-09,20;CL:0000223,6.02e-07,58;CL:0000039,6.04e-07,7;CL:0000586,6.04e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3030!2.08e-10!1;DOID:178!2.50e-10!1;DOID:326!2.50e-10!1;DOID:3978!2.50e-10!1;DOID:3394!2.50e-10!1;DOID:5844!2.50e-10!1;DOID:2152!3.01e-10!1 | |||
|ontology_enrichment_disease_v019=DOID:5409;3.10e-11;4!DOID:1325;5.70e-07;7!DOID:3904;5.70e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.10e-11,4;DOID:1325,5.70e-07,7;DOID:3904,5.70e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0001242!2.18e-10!4;UBERON:0001262!2.18e-10!4;UBERON:0004786!2.18e-10!4;UBERON:0004808!2.18e-10!4;UBERON:0001277!2.18e-10!4;UBERON:0004911!3.01e-10!1;UBERON:0003350!1.76e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001242;3.31e-40;4!UBERON:0001262;3.31e-40;4!UBERON:0004786;3.31e-40;4!UBERON:0004808;3.31e-40;4!UBERON:0001277;3.31e-40;4!UBERON:0000485;1.61e-23;7!UBERON:0003929;1.61e-23;7!UBERON:0003350;9.92e-21;8!UBERON:0001052;3.79e-11;4!UBERON:0005911;2.24e-10;36!UBERON:0000160;8.11e-10;17!UBERON:0004907;3.49e-09;5!UBERON:0000344;6.17e-09;20!UBERON:0005409;6.75e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,3.31e-40,4;UBERON:0001262,3.31e-40,4;UBERON:0004786,3.31e-40,4;UBERON:0004808,3.31e-40,4;UBERON:0001277,3.31e-40,4;UBERON:0003350,9.92e-21,8;UBERON:0000485,1.48e-18,9;UBERON:0001052,3.79e-11,4;UBERON:0000160,8.11e-10,17;UBERON:0001046,2.26e-09,19;UBERON:0004907,3.49e-09,5;UBERON:0000344,6.17e-09,20;UBERON:0005911,2.09e-08,82;UBERON:0003929,2.08e-07,54;UBERON:0005409,4.28e-07,25 | |||
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|short_description=p@chr13:92756353..92756364,+ | |||
}} | }} |
Latest revision as of 17:27, 24 July 2015
Short description: | p@chr13:92756353..92756364, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:92756353..92756364, + |
Coexpression cluster: | C235_Intestinal_Prostate_liver_colon_small_kidney_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.31e-40 | 4 |
epithelial cell of large intestine | 6.96e-21 | 2 |
epithelial cell of prostate | 1.22e-14 | 3 |
endo-epithelial cell | 2.59e-09 | 42 |
epithelial cell of alimentary canal | 6.17e-09 | 20 |
endodermal cell | 6.02e-07 | 58 |
germ line cell | 6.04e-07 | 7 |
germ cell | 6.04e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 3.31e-40 | 4 |
wall of intestine | 3.31e-40 | 4 |
gastrointestinal system mucosa | 3.31e-40 | 4 |
gastrointestinal system epithelium | 3.31e-40 | 4 |
intestinal epithelium | 3.31e-40 | 4 |
epithelium of mucosa | 9.92e-21 | 8 |
simple columnar epithelium | 1.48e-18 | 9 |
rectum | 3.79e-11 | 4 |
intestine | 8.11e-10 | 17 |
hindgut | 2.26e-09 | 19 |
lower digestive tract | 3.49e-09 | 5 |
mucosa | 6.17e-09 | 20 |
endo-epithelium | 2.09e-08 | 82 |
gut epithelium | 2.08e-07 | 54 |
gastrointestinal system | 4.28e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.10e-11 | 4 |
bronchus cancer | 5.70e-07 | 7 |
bronchogenic carcinoma | 5.70e-07 | 7 |