FFCP PHASE1:Hg19::chr21:47552005..47552020,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt=Q6FHW5 | |UniProt=Q6FHW5 | ||
|association_with_transcript=222bp_to_CR536573_5end | |association_with_transcript=222bp_to_CR536573_5end | ||
|cluster_id=chr21:47552005..47552020,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_7_at_COL6A2_5end | |description=CAGE_peak_7_at_COL6A2_5end | ||
|id=chr21:47552005..47552020,+ | |id=chr21:47552005..47552020,+ | ||
|ontology_enrichment_celltype=CL:0000055!5.15e-44!180;CL:0000057!9.77e-29!75;CL:0000680!2.05e-15!57;CL:0000056!2.05e-15!57;CL:0000355!2.05e-15!57;CL:0000183!2.16e-15!59;CL:0000187!1.02e-14!54;CL:0000393!2.85e-14!60;CL:0000211!2.85e-14!60;CL:0000048!3.36e-13!430;CL:0000723!2.23e-12!436;CL:0000034!3.29e-12!444;CL:0002620!1.47e-11!23;CL:0000192!1.62e-11!42;CL:0000514!1.62e-11!42;CL:0002371!4.23e-08!591;CL:0000359!6.24e-08!32;CL:0002334!1.01e-07!12;CL:0000144!6.48e-07!625 | |ontology_enrichment_celltype=CL:0000055!5.15e-44!180;CL:0000057!9.77e-29!75;CL:0000680!2.05e-15!57;CL:0000056!2.05e-15!57;CL:0000355!2.05e-15!57;CL:0000183!2.16e-15!59;CL:0000187!1.02e-14!54;CL:0000393!2.85e-14!60;CL:0000211!2.85e-14!60;CL:0000048!3.36e-13!430;CL:0000723!2.23e-12!436;CL:0000034!3.29e-12!444;CL:0002620!1.47e-11!23;CL:0000192!1.62e-11!42;CL:0000514!1.62e-11!42;CL:0002371!4.23e-08!591;CL:0000359!6.24e-08!32;CL:0002334!1.01e-07!12;CL:0000144!6.48e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0002620;7.76e-14;23!CL:0000057;6.32e-12;73!CL:0000723;1.40e-10;61!CL:0000134;2.06e-10;55!CL:0002334;3.12e-10;12!CL:0000048;2.19e-09;58!CL:0002320;2.76e-09;188!CL:0000192;3.12e-09;43!CL:0000187;3.15e-09;55!CL:0002570;6.54e-09;8!CL:0000393;1.44e-08;61!CL:0000211;1.44e-08;61!CL:0000034;9.23e-08;69!CL:0000359;2.06e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.39e-31,76;CL:0000048,3.59e-25,427;CL:0000723,3.99e-24,433;CL:0000034,8.85e-23,441;CL:0000187,2.57e-17,55;CL:0000680,9.72e-17,58;CL:0000056,9.72e-17,58;CL:0000355,9.72e-17,58;CL:0000393,3.50e-15,61;CL:0000211,3.50e-15,61;CL:0002320,5.02e-15,361;CL:0002620,7.55e-14,23;CL:0000192,1.88e-12,43;CL:0000514,1.88e-12,43;CL:0000134,4.65e-12,354;CL:0000219,1.94e-10,386;CL:0002334,2.75e-10,12;CL:0002570,8.14e-09,8;CL:0000359,8.02e-08,32;CL:0000136,7.76e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;3.12e-09;43!CL:0000355;2.79e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;7.77e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.46e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.79e-21!83;UBERON:0002329!6.79e-21!83;UBERON:0003077!6.79e-21!83;UBERON:0003059!6.79e-21!83;UBERON:0007282!6.79e-21!83;UBERON:0009618!6.79e-21!83;UBERON:0007285!6.79e-21!83;UBERON:0004290!2.55e-19!70;UBERON:0005256!4.88e-17!143;UBERON:0000486!1.83e-16!82;UBERON:0002385!8.06e-16!63;UBERON:0001015!8.06e-16!63;UBERON:0000383!8.06e-16!63;UBERON:0001134!2.39e-15!61;UBERON:0002036!2.39e-15!61;UBERON:0003082!2.39e-15!61;UBERON:0003102!1.12e-12!95;UBERON:0002199!2.59e-12!45;UBERON:0002416!2.59e-12!45;UBERON:0002100!7.66e-12!216;UBERON:0000475!4.47e-10!365;UBERON:0001013!8.92e-10!14;UBERON:0002097!2.17e-09!40;UBERON:0003104!1.07e-07!238;UBERON:0009142!1.07e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;3.11e-13;14!UBERON:0002384;4.85e-10;198!UBERON:0002199;5.01e-10;46!UBERON:0002416;5.01e-10;46!UBERON:0003102;1.20e-08;50!UBERON:0002385;2.26e-08;31!UBERON:0001015;2.26e-08;31!UBERON:0000383;2.26e-08;31!UBERON:0002097;2.33e-08;41!UBERON:0002204;1.61e-07;70!UBERON:0004573;7.40e-07;33!UBERON:0004571;7.40e-07;33!UBERON:0004905;8.40e-07;8!UBERON:0000982;8.40e-07;8!UBERON:0004770;8.40e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.76e-20,73;UBERON:0002329,2.67e-20,71;UBERON:0003059,2.67e-20,71;UBERON:0007282,2.67e-20,71;UBERON:0004290,2.67e-20,71;UBERON:0009618,2.67e-20,71;UBERON:0003077,8.71e-20,72;UBERON:0007285,8.71e-20,72;UBERON:0000486,3.17e-17,83;UBERON:0007503,5.23e-17,78;UBERON:0002385,7.76e-16,64;UBERON:0001015,7.76e-16,64;UBERON:0000383,7.76e-16,64;UBERON:0001134,7.79e-16,62;UBERON:0002036,7.79e-16,62;UBERON:0003082,7.79e-16,62;UBERON:0002199,2.71e-15,46;UBERON:0002416,2.71e-15,46;UBERON:0005256,8.90e-15,122;UBERON:0002384,2.06e-14,371;UBERON:0003102,3.37e-14,99;UBERON:0001013,3.45e-13,14;UBERON:0003104,5.04e-13,160;UBERON:0009142,5.04e-13,160;UBERON:0002097,2.48e-11,41;UBERON:0000926,1.10e-09,315;UBERON:0004120,1.10e-09,315;UBERON:0006603,1.10e-09,315;UBERON:0000490,3.76e-08,148;UBERON:0002100,1.65e-07,199;UBERON:0004573,3.41e-07,33;UBERON:0004571,3.41e-07,33;UBERON:0001637,6.82e-07,42;UBERON:0003509,6.82e-07,42;UBERON:0004572,6.82e-07,42;UBERON:0004905,8.98e-07,8;UBERON:0000982,8.98e-07,8;UBERON:0004770,8.98e-07,8 | |||
|phase1_expression=2.54349730978779,8.77812147953031,1.69145284915165,6.00439790118782,8.04529969969118,5.23403114460221,15.1979926900986,5.68547886084148,7.31319758959548,0.245733936501509,0,0,0.263766978228454,7.30221482464275,6.2965501388304,16.1358035148426,12.0538905604795,9.49403117503585,11.7103871709722,1.72369481307503,2.24400760368678,3.13454721478088,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06976078313403,0,0,2.68280343881454,1.2786256184353,5.42158728576849,2.50668955317945,15.3537310098473,0,4.37971383272372,0.283604451492204,0.443458794925128,0.175669571386252,0.458426764241994,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,4.17880688493113,1.72131935057184,16.92336062418,3.54668382198357,0.560677600142307,1.06748995729705,10.3600370335207,1.24484414159907,1.48181739276657,0.490385709340376,2.27036141467397,1.15235184896,1.64025002283658,13.7350433805341,0.570471821544449,11.2086510413851,1.996386476944,2.26622122115384,3.23036855415172,0.408308342509787,7.61572767332961,2.89312187292143,7.12801714369232,16.0723504031062,0.910161361938026,12.2165084108761,1.34668891163253,2.00189631795143,0,0.877955241761676,6.12975591598039,3.00476117813194,1.02088964844019,5.02290979928813,7.47450860864986,10.8085269591377,5.10154863343484,2.67936576019941,6.1833729610951,5.02515512095292,6.41350062516812,4.18979122193154,4.79624171063818,3.77404584433427,10.1837015795851,7.10019185033229,3.02256294682921,5.93462073086707,0,0,0,0.487894824518382,0.132529768321485,0.464775771478074,0.829288440122964,0,0.36497735907583,1.56449532329816,52.1025159936237,2.76269842704961,10.6804623447355,8.66255378003503,0,0,0,0,0,0,0,0,0,0,1.40241773803446,4.5273141246454,5.88034845542168,0,0,0,0,0,0,0,0,0,0,1.62904152655162,5.19967392639789,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0,0,0.12624243342638,0.253991577168676,0,0,3.4214489204541,1.95372236136315,0,0,0.784917590417525,0,2.3468251462704,0.904902010304444,50.0719024192635,12.67954128834,5.31876233169741,0,2.05765899409714,0,2.39779961114489,5.43316375900961,15.7360265563518,0.823240336780769,3.25736184293735,5.33087923113819,0.791951872933429,0.602878754119172,0,0.099972991182057,0,0,0,5.5113716763064,11.4861935834114,0,0.868687840005475,2.26023954805422,0.537182889719687,0,0.197030760201927,1.07813787429759,0.128343036279748,0,0,1.54657762555539,0,0,0,0,0,7.11610651971011,10.5035809422532,5.15403545029498,5.8231841228626,4.81758269752337,1.41932173530541,1.63997980989798,0.902838299183157,9.09630016223939,2.0694614258501,7.3064815838898,2.21243002250044,11.7292879531912,7.04884166865866,9.95115929051482,0,0.215714200818617,0.106727557803444,0,0,1.81434175997808,1.48864684691266,1.38115775959256,5.3325417942284,1.53766979106841,2.55853624533352,3.37793234401576,2.96836132889982,20.9725183571612,23.793271191959,5.09188367285617,29.0782480342828,23.8231275842916,0.120859449591622,0,0,3.09999010044438,15.1135669445575,14.8170588904149,0.902399225814824,0.231046011313244,0,0,0.105551628892876,0,0,0.647747748306418,0,0.270946437543853,0.501689773854853,0,0.831076008928724,0,0,0,0,0,0.325378394664303,0.618246069886334,0.457847324091717,0.082509499920588,0.574265537996172,1.30012049207304,8.03419649220798,15.3706442084474,3.23502095940753,2.76306614507033,1.37836572484531,4.40423003959922,8.55598494093948,2.72725207731523,7.65675506561941,0,0,0,0,1.85938219718914,18.5739284630078,0.6970372701606,1.54016790088044,0,0,2.22389062924704,0.286249773483982,0.372158369359667,0.316379424718726,2.47819252100972,1.535386747868,3.42351190427136,1.59101623962968,3.92474320099615,1.79872457583315,3.84351841630477,1.53156123049392,0.404364963146632,0,1.68503382495592,0.48763373908959,8.77368562672624,5.28250733783777,4.23149725364756,12.0194617160656,1.13008116620243,0.551365343546124,5.97095077717098,3.5076070820301,5.78775534266688,2.62357900818653,0,4.02770547529675,1.69017361519345,1.00387946542836,2.65272410735427,0,1.06428319221179,17.3108260944085,7.57378253807774,0,2.44954304171488,0,0.670302275535787,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31857361344705,0,0,0,0.23874448473769,0,0,0,0,0.333926115068718,0,0,2.39097585901284,0,0,0,0,5.59871257791253,0.179736702294654,0,0,1.1837208676432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,1.46205491157214,0.455768223388005,0,0,0,0,1.09917112082235,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.265372693510018,0.611030144933625,0.296521128680622,0,0,0.067401132980677,0.802577647298789,0,0,0,0,1.57833761139756,1.20990716048664,0.30607276163049,0.442306057399416,0,0,0,0,0,0,0.284609546029793,0,0.17355973833513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| ||
|short_description=p7@COL6A2 | |short_description=p7@COL6A2 | ||
}} | }} |
Latest revision as of 23:12, 18 September 2015
Short description: | p7@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | 222bp_to_CR536573_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | Q6FHW5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.39e-31 | 76 |
multi fate stem cell | 3.59e-25 | 427 |
somatic stem cell | 3.99e-24 | 433 |
stem cell | 8.85e-23 | 441 |
muscle cell | 2.57e-17 | 55 |
muscle precursor cell | 9.72e-17 | 58 |
myoblast | 9.72e-17 | 58 |
multi-potent skeletal muscle stem cell | 9.72e-17 | 58 |
electrically responsive cell | 3.50e-15 | 61 |
electrically active cell | 3.50e-15 | 61 |
connective tissue cell | 5.02e-15 | 361 |
skin fibroblast | 7.55e-14 | 23 |
smooth muscle cell | 1.88e-12 | 43 |
smooth muscle myoblast | 1.88e-12 | 43 |
mesenchymal cell | 4.65e-12 | 354 |
motile cell | 1.94e-10 | 386 |
preadipocyte | 2.75e-10 | 12 |
mesenchymal stem cell of adipose | 8.14e-09 | 8 |
vascular associated smooth muscle cell | 8.02e-08 | 32 |
fat cell | 7.76e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.46e-09 | 14 |