FFCP PHASE1:Hg19::chr7:119913850..119913858,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3751 | |EntrezGene=3751 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6238 | |HGNC=6238 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NZV8,A4D0V9 | |UniProt=Q9NZV8,A4D0V9 | ||
|association_with_transcript=128bp_to_ENST00000331113,NM_012281,uc003vjj.1_5end | |association_with_transcript=128bp_to_ENST00000331113,NM_012281,uc003vjj.1_5end | ||
|cluster_id=chr7:119913850..119913858,+ | |||
|coexpression_cluster_id=C710 | |||
|description=CAGE_peak_5_at_KCND2_5end | |description=CAGE_peak_5_at_KCND2_5end | ||
|id=chr7:119913850..119913858,+ | |id=chr7:119913850..119913858,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.01e-09!5;CL:0000242!8.69e-08!2 | |ontology_enrichment_celltype=CL:0002322!1.01e-09!5;CL:0000242!8.69e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000123;9.86e-18;2!CL:0000242;9.86e-18;2!CL:0000312;6.78e-08;5!CL:0000240;8.72e-07;6!CL:0000311;8.72e-07;6!CL:0000079;8.72e-07;6!CL:0000237;8.72e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.07e-17,2;CL:0000312,7.01e-08,5;CL:0000240,8.97e-07,6;CL:0000311,8.97e-07,6;CL:0000079,8.97e-07,6;CL:0000237,8.97e-07,6;CL:0000036,8.97e-07,6;CL:0000357,8.97e-07,6;CL:0000114,8.97e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.84e-98;3!CL:0000357;8.72e-07;6!CL:0000114;8.72e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.15e-55!57;UBERON:0005068!9.15e-55!57;UBERON:0006241!9.15e-55!57;UBERON:0007135!9.15e-55!57;UBERON:0001017!2.56e-47!82;UBERON:0002616!5.41e-46!59;UBERON:0005743!1.07e-44!86;UBERON:0000955!3.54e-40!69;UBERON:0006238!3.54e-40!69;UBERON:0000073!1.35e-39!94;UBERON:0001016!1.35e-39!94;UBERON:0002020!2.86e-37!34;UBERON:0003528!2.86e-37!34;UBERON:0002780!1.68e-36!41;UBERON:0001890!1.68e-36!41;UBERON:0006240!1.68e-36!41;UBERON:0001869!3.82e-36!32;UBERON:0003075!1.24e-35!86;UBERON:0007284!1.24e-35!86;UBERON:0003080!1.69e-35!42;UBERON:0001893!9.41e-34!34;UBERON:0002346!1.18e-33!90;UBERON:0002791!1.83e-31!33;UBERON:0007023!7.46e-30!115;UBERON:0002619!8.07e-27!22;UBERON:0001950!7.97e-26!20;UBERON:0000956!2.75e-23!25;UBERON:0000203!2.75e-23!25;UBERON:0003056!1.24e-22!61;UBERON:0004121!1.40e-20!169;UBERON:0000033!2.14e-20!123;UBERON:0000153!2.22e-20!129;UBERON:0007811!2.22e-20!129;UBERON:0003076!2.24e-20!15;UBERON:0003057!2.24e-20!15;UBERON:0000924!7.09e-20!173;UBERON:0006601!7.09e-20!173;UBERON:0000200!1.57e-18!6;UBERON:0004733!8.68e-17!12;UBERON:0002028!8.68e-17!12;UBERON:0007277!8.68e-17!12;UBERON:0002308!3.84e-16!9;UBERON:0000125!3.84e-16!9;UBERON:0004732!2.23e-15!13;UBERON:0000025!9.73e-14!194;UBERON:0002680!5.16e-13!9;UBERON:0001895!5.16e-13!9;UBERON:0010092!5.16e-13!9;UBERON:0002420!4.23e-12!9;UBERON:0007245!4.23e-12!9;UBERON:0010009!4.23e-12!9;UBERON:0010011!4.23e-12!9;UBERON:0000454!4.23e-12!9;UBERON:0009663!4.64e-11!7;UBERON:0000988!2.32e-10!3;UBERON:0002298!4.15e-10!8;UBERON:0004111!5.11e-10!241;UBERON:0002771!9.38e-10!3;UBERON:0001871!1.70e-09!7;UBERON:0000483!3.06e-08!309;UBERON:0000477!3.13e-08!286;UBERON:0000119!4.55e-08!312;UBERON:0000369!9.21e-08!4;UBERON:0002435!9.21e-08!4;UBERON:0000204!9.21e-08!4;UBERON:0010082!9.21e-08!4;UBERON:0001870!2.68e-07!2;UBERON:0000064!3.27e-07!219;UBERON:0002148!3.90e-07!2;UBERON:0009662!3.90e-07!2;UBERON:0001875!4.42e-07!2;UBERON:0006514!4.42e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002680;8.65e-59;9!UBERON:0001895;8.65e-59;9!UBERON:0002037;8.16e-50;6!UBERON:0004733;2.54e-44;12!UBERON:0002028;2.54e-44;12!UBERON:0004732;5.57e-41;13!UBERON:0000988;1.96e-12;3!UBERON:0000073;1.41e-07;53!UBERON:0002616;1.41e-07;53!UBERON:0002298;7.37e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002680,1.00e-58,9;UBERON:0001895,1.00e-58,9;UBERON:0010092,1.00e-58,9;UBERON:0002037,8.88e-50,6;UBERON:0006215,8.88e-50,6;UBERON:0004733,2.84e-44,12;UBERON:0002028,2.84e-44,12;UBERON:0007277,2.84e-44,12;UBERON:0004732,6.18e-41,13;UBERON:0003076,1.36e-35,15;UBERON:0003057,1.36e-35,15;UBERON:0000988,2.07e-12,3;UBERON:0000073,2.28e-10,53;UBERON:0002616,2.28e-10,53;UBERON:0001049,7.51e-10,56;UBERON:0005068,7.51e-10,56;UBERON:0006241,7.51e-10,56;UBERON:0007135,7.51e-10,56;UBERON:0010371,2.65e-08,104;UBERON:0000955,4.07e-08,68;UBERON:0006238,4.07e-08,68;UBERON:0001017,6.43e-07,81;UBERON:0003075,6.43e-07,82;UBERON:0007284,6.43e-07,82;UBERON:0002298,7.58e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916960868975415,0.738905305049512,0.708397031823113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,1.90012867315194,0,0,0,0,0.246169610922139,0,0,0.179021174675609,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0.361789315876224,1.52581736317083,2.87506075821184,1.77328571372128,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0.160753148465019,0.412618309791701,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.3755727921195,0,0.443716206147409,0.993542447062135,0,0,0,0,0,0.468334905806882,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.834979926253974,0,0.319267718114302,0.205116364240755,0,0.484100767249525,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0.413373593002368,0.380494861163441,0,0,0,0,0,0,0,0,0.91064876540519,0,0.230467975111559,0,2.17503145525861,0.591954962065642,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0.339957450954573,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.535928260312357,0,0.413731983447581,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.162806537221949,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916960868975415,0.738905305049512,0.708397031823113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,1.90012867315194,0,0,0,0,0.246169610922139,0,0,0.179021174675609,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0.361789315876224,1.52581736317083,2.87506075821184,1.77328571372128,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0.160753148465019,0.412618309791701,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.3755727921195,0,0.443716206147409,0.993542447062135,0,0,0,0,0,0.468334905806882,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.834979926253974,0,0.319267718114302,0.205116364240755,0,0.484100767249525,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0.413373593002368,0.380494861163441,0,0,0,0,0,0,0,0,0.91064876540519,0,0.230467975111559,0,2.17503145525861,0.591954962065642,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0.339957450954573,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.535928260312357,0,0.413731983447581,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.162806537221949,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p5@KCND2 | |short_description=p5@KCND2 | ||
}} | }} |
Latest revision as of 21:08, 15 September 2015
Short description: | p5@KCND2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_KCND2_5end |
Coexpression cluster: | C710_anaplastic_cerebellum_xeroderma_B_carcinoid_merkel_occipital |
Association with transcript: | 128bp_to_ENST00000331113, NM_012281, uc003vjj.1_5end |
EntrezGene: | KCND2 |
HGNC: | 6238 |
UniProt: | Q9NZV8A4D0V9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.07e-17 | 2 |
keratinocyte | 7.01e-08 | 5 |
stratified squamous epithelial cell | 8.97e-07 | 6 |
keratin accumulating cell | 8.97e-07 | 6 |
stratified epithelial cell | 8.97e-07 | 6 |
keratinizing barrier epithelial cell | 8.97e-07 | 6 |
epithelial fate stem cell | 8.97e-07 | 6 |
stratified epithelial stem cell | 8.97e-07 | 6 |
surface ectodermal cell | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 1.00e-58 | 9 |
metencephalon | 1.00e-58 | 9 |
future metencephalon | 1.00e-58 | 9 |
cerebellum | 8.88e-50 | 6 |
rhombic lip | 8.88e-50 | 6 |
segmental subdivision of hindbrain | 2.84e-44 | 12 |
hindbrain | 2.84e-44 | 12 |
presumptive hindbrain | 2.84e-44 | 12 |
segmental subdivision of nervous system | 6.18e-41 | 13 |
posterior neural tube | 1.36e-35 | 15 |
chordal neural plate | 1.36e-35 | 15 |
pons | 2.07e-12 | 3 |
regional part of nervous system | 2.28e-10 | 53 |
regional part of brain | 2.28e-10 | 53 |
neural tube | 7.51e-10 | 56 |
neural rod | 7.51e-10 | 56 |
future spinal cord | 7.51e-10 | 56 |
neural keel | 7.51e-10 | 56 |
ecto-epithelium | 2.65e-08 | 104 |
brain | 4.07e-08 | 68 |
future brain | 4.07e-08 | 68 |
central nervous system | 6.43e-07 | 81 |
neural plate | 6.43e-07 | 82 |
presumptive neural plate | 6.43e-07 | 82 |
brainstem | 7.58e-07 | 6 |