FFCP PHASE1:Hg19::chr6:90024990..90024993,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2570 | |EntrezGene=2570 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4091 | |HGNC=4091 | ||
|TSSclassifier=strong | |||
|UniProt=P28476 | |UniProt=P28476 | ||
|association_with_transcript=-23bp_to_NM_002043,uc003pnb.2_5end | |association_with_transcript=-23bp_to_NM_002043,uc003pnb.2_5end | ||
|cluster_id=chr6:90024990..90024993,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_3_at_GABRR2_5end | |description=CAGE_peak_3_at_GABRR2_5end | ||
|id=chr6:90024990..90024993,- | |id=chr6:90024990..90024993,- | ||
|ontology_enrichment_celltype=CL:0000306!1.03e-17!4;CL:0002222!1.03e-17!4;CL:0002224!1.03e-17!4 | |ontology_enrichment_celltype=CL:0000306!1.03e-17!4;CL:0002222!1.03e-17!4;CL:0002224!1.03e-17!4 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.39e-66;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000970!1.56e-30!20;UBERON:0002104!3.84e-29!21;UBERON:0000020!1.01e-26!23;UBERON:0001032!1.16e-25!24;UBERON:0004456!1.16e-25!24;UBERON:0010077!1.03e-17!4;UBERON:0005389!1.03e-17!4;UBERON:0000484!1.03e-17!4;UBERON:0002546!1.03e-17!4;UBERON:0000965!1.03e-17!4;UBERON:0001803!1.03e-17!4;UBERON:0003073!1.03e-17!4;UBERON:0005426!1.03e-17!4;UBERON:0000019!5.27e-15!19;UBERON:0000047!5.27e-15!19;UBERON:0004088!5.27e-15!19;UBERON:0003072!5.27e-15!19;UBERON:0003071!5.27e-15!19;UBERON:0004128!5.27e-15!19;UBERON:0000966!1.40e-14!5;UBERON:0005388!1.40e-14!5;UBERON:0001802!1.40e-14!5;UBERON:0001456!1.09e-13!21;UBERON:0005085!3.10e-10!29;UBERON:0000076!1.47e-09!8;UBERON:0007625!2.63e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.48e-40;5!UBERON:0005388;1.48e-40;5!UBERON:0001802;1.48e-40;5!UBERON:0000019;6.95e-12;19!UBERON:0000047;6.95e-12;19!UBERON:0004088;6.95e-12;19!UBERON:0010230;6.95e-12;19!UBERON:0000970;2.29e-11;20!UBERON:0002104;6.74e-11;21!UBERON:0001456;6.74e-11;21!UBERON:0000020;4.42e-10;23!UBERON:0001032;1.01e-09;24!UBERON:0004456;1.01e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.27e-34,6;UBERON:0005388,4.27e-34,6;UBERON:0001802,4.27e-34,6;UBERON:0000019,2.29e-11,20;UBERON:0000047,2.29e-11,20;UBERON:0010312,2.29e-11,20;UBERON:0004088,2.29e-11,20;UBERON:0010230,2.29e-11,20;UBERON:0003072,2.29e-11,20;UBERON:0004128,2.29e-11,20;UBERON:0003071,2.29e-11,20;UBERON:0000970,6.74e-11,21;UBERON:0002104,6.74e-11,21;UBERON:0001456,1.80e-10,22;UBERON:0000020,1.01e-09,24;UBERON:0001032,1.01e-09,24;UBERON:0004456,1.01e-09,24;UBERON:0005085,7.41e-08,31 | |||
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|short_description=p3@GABRR2 | |short_description=p3@GABRR2 | ||
}} | }} |
Latest revision as of 03:22, 20 September 2015
Short description: | p3@GABRR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GABRR2_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -23bp_to_NM_002043, uc003pnb.2_5end |
EntrezGene: | GABRR2 |
HGNC: | 4091 |
UniProt: | P28476 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retina | 4.27e-34 | 6 |
photoreceptor array | 4.27e-34 | 6 |
posterior segment of eyeball | 4.27e-34 | 6 |
camera-type eye | 2.29e-11 | 20 |
simple eye | 2.29e-11 | 20 |
immature eye | 2.29e-11 | 20 |
ocular region | 2.29e-11 | 20 |
eyeball of camera-type eye | 2.29e-11 | 20 |
optic cup | 2.29e-11 | 20 |
optic vesicle | 2.29e-11 | 20 |
eye primordium | 2.29e-11 | 20 |
eye | 6.74e-11 | 21 |
visual system | 6.74e-11 | 21 |
face | 1.80e-10 | 22 |
sense organ | 1.01e-09 | 24 |
sensory system | 1.01e-09 | 24 |
entire sense organ system | 1.01e-09 | 24 |
ectodermal placode | 7.41e-08 | 31 |