FFCP PHASE1:Hg19::chr6:133008487..133008499,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8876 | |EntrezGene=8876 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12705 | |HGNC=12705 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=17bp_to_uc003qdn.2_5end | |association_with_transcript=17bp_to_uc003qdn.2_5end | ||
|cluster_id=chr6:133008487..133008499,- | |||
|coexpression_cluster_id=C2842 | |||
|description=CAGE_peak_3_at_VNN1_5end | |description=CAGE_peak_3_at_VNN1_5end | ||
|id=chr6:133008487..133008499,- | |id=chr6:133008487..133008499,- | ||
|ontology_enrichment_celltype=CL:0002619!1.30e-07!3;CL:0002621!1.70e-07!3;CL:0000066!3.00e-07!254;CL:0002166!5.35e-07!3 | |ontology_enrichment_celltype=CL:0002619!1.30e-07!3;CL:0002621!1.70e-07!3;CL:0000066!3.00e-07!254;CL:0002166!5.35e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002619;3.35e-23;3!CL:0002621;9.75e-23;3!CL:0002166;2.87e-10;3!CL:1001319;2.55e-08;1!CL:1000600;2.55e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002619,3.36e-23,3;CL:0002621,8.75e-23,3;CL:0002166,4.39e-10,3;CL:1001319,2.84e-08,1;CL:1000600,2.84e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0006242;2.55e-08;1 | |||
|ontology_enrichment_disease=DOID:2394!1.40e-12!14;DOID:193!2.31e-08!29;DOID:120!8.39e-08!27 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.49e-12;14!DOID:5662;2.55e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.57e-12,14;DOID:5662,3.28e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000992!2.56e-08!13;UBERON:0005911!5.90e-08!82;UBERON:0001949!1.70e-07!3;UBERON:0003929!2.41e-07!54;UBERON:0002294!6.00e-07!7;UBERON:0001173!6.00e-07!7;UBERON:0004912!6.00e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;9.75e-23;3!UBERON:0003350;9.00e-15;8!UBERON:0002110;2.87e-10;3!UBERON:0003929;4.68e-10;7!UBERON:0000486;6.70e-10;12!UBERON:0001828;7.39e-09;8!UBERON:0004645;2.55e-08;1!UBERON:0001256;2.55e-08;1!UBERON:0001259;2.55e-08;1!UBERON:0001708;6.47e-08;4!UBERON:0008895;6.47e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,8.75e-23,3;UBERON:0003350,9.02e-15,8;UBERON:0002110,2.16e-10,3;UBERON:0006242,2.16e-10,3;UBERON:0001828,7.11e-09,8;UBERON:0004645,2.84e-08,1;UBERON:0001256,2.84e-08,1;UBERON:0001259,2.84e-08,1;UBERON:0001708,8.87e-08,4;UBERON:0008895,8.87e-08,4;UBERON:0002323,8.69e-07,46 | |||
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| ||
|short_description=p3@VNN1 | |short_description=p3@VNN1 | ||
}} | }} |
Latest revision as of 19:57, 24 September 2015
Short description: | p3@VNN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_VNN1_5end |
Coexpression cluster: | C2842_tubular_Mesothelial_CD14_giant_mesenchymal_mesothelioma_Gingival |
Association with transcript: | 17bp_to_uc003qdn.2_5end |
EntrezGene: | VNN1 |
HGNC: | 12705 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult endothelial progenitor cell | 3.36e-23 | 3 |
gingival epithelial cell | 8.75e-23 | 3 |
epithelial cell of Malassez | 4.39e-10 | 3 |
bladder cell | 2.84e-08 | 1 |
lower urinary tract cell | 2.84e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 8.75e-23 | 3 |
epithelium of mucosa | 9.02e-15 | 8 |
gallbladder | 2.16e-10 | 3 |
gall bladder primordium | 2.16e-10 | 3 |
gingiva | 7.11e-09 | 8 |
urinary bladder urothelium | 2.84e-08 | 1 |
wall of urinary bladder | 2.84e-08 | 1 |
mucosa of urinary bladder | 2.84e-08 | 1 |
jaw skeleton | 8.87e-08 | 4 |
splanchnocranium | 8.87e-08 | 4 |
body cavity | 8.69e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.57e-12 | 14 |
pleomorphic carcinoma | 3.28e-08 | 1 |