FFCP PHASE1:Hg19::chr1:62660484..62660495,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54596 | |EntrezGene=54596 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25595 | |HGNC=25595 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001dae.3_5end | |association_with_transcript=0bp_to_uc001dae.3_5end | ||
|cluster_id=chr1:62660484..62660495,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_3_at_L1TD1_5end | |description=CAGE_peak_3_at_L1TD1_5end | ||
|id=chr1:62660484..62660495,+ | |id=chr1:62660484..62660495,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.43e-14!5;CL:0000349!1.21e-08!3;CL:0002577!1.21e-08!3;CL:0002541!1.73e-08!3;CL:0000039!8.16e-07!7;CL:0000586!8.16e-07!7 | |ontology_enrichment_celltype=CL:0002322!1.43e-14!5;CL:0000349!1.21e-08!3;CL:0002577!1.21e-08!3;CL:0002541!1.73e-08!3;CL:0000039!8.16e-07!7;CL:0000586!8.16e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0002322;3.54e-62;5!CL:0000039;7.32e-29;7!CL:0000586;7.32e-29;7!CL:0002321;8.03e-21;15!CL:0000540;3.52e-19;6!CL:0000404;3.52e-19;6!CL:0000148;8.42e-12;10!CL:0000147;1.38e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.18e-62,5;CL:0000039,7.32e-29,7;CL:0000586,7.32e-29,7;CL:0000540,3.20e-19,6;CL:0000031,3.20e-19,6;CL:0000404,3.20e-19,6;CL:0000047,1.40e-14,8;CL:0000148,8.74e-12,10;CL:0000541,8.74e-12,10;CL:0000147,1.42e-08,14;CL:0000133,5.39e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.55e-20;10!UBERON:0005564;2.55e-20;10!CL:0000031;3.52e-19;6 | |||
|ontology_enrichment_disease=DOID:3095!7.56e-07!22;DOID:2994!7.56e-07!22 | |ontology_enrichment_disease=DOID:3095!7.56e-07!22;DOID:2994!7.56e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;3.03e-14;22!DOID:2994;3.03e-14;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.99e-14,22;DOID:2994,2.99e-14,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.11e-20!14;UBERON:0000158!1.11e-20!14;UBERON:0003124!4.00e-13!7;UBERON:0004923!3.73e-11!57;UBERON:0000478!5.65e-11!24;UBERON:0000305!2.19e-09!7;UBERON:0000476!1.73e-08!3;UBERON:0000920!1.73e-08!3;UBERON:0000473!1.98e-08!8;UBERON:0003135!2.45e-08!11;UBERON:0004871!3.73e-08!8 | |ontology_enrichment_uberon=UBERON:0005631!1.11e-20!14;UBERON:0000158!1.11e-20!14;UBERON:0003124!4.00e-13!7;UBERON:0004923!3.73e-11!57;UBERON:0000478!5.65e-11!24;UBERON:0000305!2.19e-09!7;UBERON:0000476!1.73e-08!3;UBERON:0000920!1.73e-08!3;UBERON:0000473!1.98e-08!8;UBERON:0003135!2.45e-08!11;UBERON:0004871!3.73e-08!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.63e-25;8!UBERON:0003135;1.66e-18;11!UBERON:0000922;1.85e-12;49!UBERON:0000991;8.01e-10;21!UBERON:0003101;2.19e-09;22!UBERON:0000079;2.19e-09;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.63e-25,8;UBERON:0003135,1.67e-18,11;UBERON:0000991,8.01e-10,21;UBERON:0009196,8.01e-10,21;UBERON:0009117,8.01e-10,21;UBERON:0005564,8.01e-10,21;UBERON:0004176,2.19e-09,22;UBERON:0003101,2.19e-09,22;UBERON:0000079,2.19e-09,22;UBERON:0003124,6.08e-08,7 | |||
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| |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0.285012743741249,0,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0.280901613404497,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,5.12289565744301,5.16866096453793,5.6935032006064,2.38420426535352,3.28017106138317,2.91981887260664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548751427043128,0,0,0.833296006426766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447792613514241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.65147236858747,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,3.32870879020994,0.604780586659361,0,0.61384789315225,0,0,0,0,0,0.154209693802656,0,0.164254312027618,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0.574265537996172,0,0,0,0,0,0,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0.593929361665277,0.921482106297696,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0.183195186803725,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782205530939212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.73280352390533,3.98864366131978,4.15440338029185,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637724760305049,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.879356221798103,0,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.0939839179798536,0.386747327841463,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,5.46327859818478,0,3.3656313814854,7.74930475270125,11.0273879441814,1.0028301571695,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p3@L1TD1 | |short_description=p3@L1TD1 | ||
}} | }} |
Latest revision as of 19:24, 18 September 2015
Short description: | p3@L1TD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_L1TD1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_uc001dae.3_5end |
EntrezGene: | L1TD1 |
HGNC: | 25595 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.18e-62 | 5 |
germ line cell | 7.32e-29 | 7 |
germ cell | 7.32e-29 | 7 |
neuron | 3.20e-19 | 6 |
neuroblast | 3.20e-19 | 6 |
electrically signaling cell | 3.20e-19 | 6 |
neuronal stem cell | 1.40e-14 | 8 |
melanocyte | 8.74e-12 | 10 |
melanoblast | 8.74e-12 | 10 |
pigment cell | 1.42e-08 | 14 |
neurectodermal cell | 5.39e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 2.63e-25 | 8 |
male reproductive organ | 1.67e-18 | 11 |
gonad | 8.01e-10 | 21 |
indifferent external genitalia | 8.01e-10 | 21 |
indifferent gonad | 8.01e-10 | 21 |
gonad primordium | 8.01e-10 | 21 |
external genitalia | 2.19e-09 | 22 |
male organism | 2.19e-09 | 22 |
male reproductive system | 2.19e-09 | 22 |
chorion | 6.08e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.99e-14 | 22 |
germ cell cancer | 2.99e-14 | 22 |