FFCP PHASE1:Hg19::chr5:20575812..20575831,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1016 | |EntrezGene=1016 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1757 | |HGNC=1757 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=140bp_to_ENST00000507632_5end | |association_with_transcript=140bp_to_ENST00000507632_5end | ||
|cluster_id=chr5:20575812..20575831,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_4_at_CDH18_5end | |description=CAGE_peak_4_at_CDH18_5end | ||
|id=chr5:20575812..20575831,- | |id=chr5:20575812..20575831,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.37e-21;3!UBERON:0006241;3.06e-20;3!UBERON:0003057;3.06e-20;3!UBERON:0006601;2.85e-12;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.90e-82!57;UBERON:0005068!8.90e-82!57;UBERON:0006241!8.90e-82!57;UBERON:0007135!8.90e-82!57;UBERON:0003075!2.31e-68!86;UBERON:0007284!2.31e-68!86;UBERON:0002616!2.36e-66!59;UBERON:0002346!7.96e-65!90;UBERON:0001017!7.79e-62!82;UBERON:0005743!1.87e-61!86;UBERON:0000955!1.41e-57!69;UBERON:0006238!1.41e-57!69;UBERON:0000073!1.16e-54!94;UBERON:0001016!1.16e-54!94;UBERON:0002780!3.88e-54!41;UBERON:0001890!3.88e-54!41;UBERON:0006240!3.88e-54!41;UBERON:0002020!1.12e-53!34;UBERON:0003528!1.12e-53!34;UBERON:0001893!8.25e-53!34;UBERON:0003080!1.09e-52!42;UBERON:0001869!3.22e-52!32;UBERON:0002791!2.66e-50!33;UBERON:0002619!8.61e-45!22;UBERON:0001950!2.22e-44!20;UBERON:0007023!1.82e-43!115;UBERON:0003056!4.71e-42!61;UBERON:0000956!5.22e-39!25;UBERON:0000203!5.22e-39!25;UBERON:0000153!7.95e-37!129;UBERON:0007811!7.95e-37!129;UBERON:0000033!2.30e-35!123;UBERON:0004121!9.00e-32!169;UBERON:0000924!9.03e-31!173;UBERON:0006601!9.03e-31!173;UBERON:0003076!7.89e-30!15;UBERON:0003057!7.89e-30!15;UBERON:0004733!2.29e-21!12;UBERON:0002028!2.29e-21!12;UBERON:0007277!2.29e-21!12;UBERON:0004732!1.43e-19!13;UBERON:0000025!6.61e-19!194;UBERON:0001871!7.92e-19!7;UBERON:0002021!5.22e-16!5;UBERON:0002308!7.65e-16!9;UBERON:0000125!7.65e-16!9;UBERON:0002420!1.42e-15!9;UBERON:0007245!1.42e-15!9;UBERON:0010009!1.42e-15!9;UBERON:0010011!1.42e-15!9;UBERON:0000454!1.42e-15!9;UBERON:0000483!1.56e-15!309;UBERON:0000119!2.90e-15!312;UBERON:0002298!1.25e-14!8;UBERON:0004111!5.42e-14!241;UBERON:0002680!3.30e-13!9;UBERON:0001895!3.30e-13!9;UBERON:0010092!3.30e-13!9;UBERON:0000477!3.50e-13!286;UBERON:0000200!5.43e-13!6;UBERON:0000064!1.91e-12!219;UBERON:0000475!3.36e-11!365;UBERON:0000988!7.29e-11!3;UBERON:0001896!1.21e-10!3;UBERON:0005290!1.21e-10!3;UBERON:0010096!1.21e-10!3;UBERON:0002240!1.33e-10!3;UBERON:0002771!1.47e-10!3;UBERON:0009663!2.49e-10!7;UBERON:0000349!3.06e-10!5;UBERON:0001872!3.37e-10!5;UBERON:0000062!2.46e-09!511;UBERON:0002148!7.87e-08!2;UBERON:0009662!7.87e-08!2;UBERON:0000922!1.16e-07!612;UBERON:0000481!1.61e-07!347;UBERON:0001876!1.87e-07!2;UBERON:0001897!4.19e-07!2;UBERON:0000369!4.35e-07!4;UBERON:0002435!4.35e-07!4;UBERON:0000204!4.35e-07!4;UBERON:0010082!4.35e-07!4;UBERON:0001875!6.03e-07!2;UBERON:0006514!6.03e-07!2;UBERON:0002360!7.44e-07!2;UBERON:0000094!7.44e-07!2;UBERON:0007645!7.44e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;3.09e-49;20!UBERON:0002619;9.61e-45;22!UBERON:0004733;1.25e-43;12!UBERON:0002028;1.25e-43;12!UBERON:0004732;3.63e-40;13!UBERON:0000956;2.68e-39;25!UBERON:0000203;2.68e-39;25!UBERON:0002298;5.12e-39;6!UBERON:0003528;9.36e-36;34!UBERON:0002020;9.36e-36;34!UBERON:0000073;2.86e-33;53!UBERON:0002616;2.86e-33;53!UBERON:0002791;1.09e-31;32!UBERON:0001869;1.22e-30;32!UBERON:0001893;2.52e-28;34!UBERON:0002680;9.75e-27;9!UBERON:0001895;9.75e-27;9!UBERON:0001017;1.42e-25;75!UBERON:0001016;8.32e-22;83!UBERON:0002780;4.69e-21;41!UBERON:0001890;4.69e-21;41!UBERON:0002021;4.70e-21;5!UBERON:0000988;8.74e-21;3!UBERON:0000955;1.20e-20;68!UBERON:0002240;3.06e-20;3!UBERON:0005174;3.06e-20;3!UBERON:0001137;3.06e-20;3!UBERON:0001896;4.84e-20;3!UBERON:0005290;4.84e-20;3!UBERON:0001871;4.89e-15;6!UBERON:0002148;1.44e-14;2!UBERON:0006331;1.44e-14;2!UBERON:0009662;1.44e-14;2!UBERON:0002771;6.61e-14;2!UBERON:0001872;4.05e-12;5!UBERON:0002037;6.16e-11;6!UBERON:0007023;2.34e-10;114!UBERON:0000200;2.46e-10;6!UBERON:0001870;1.44e-09;3!UBERON:0011216;8.46e-09;132!UBERON:0003112;1.22e-07;1!UBERON:0011158;1.22e-07;1!UBERON:0003128;1.22e-07;1!UBERON:0001703;1.22e-07;1!UBERON:0002241;1.22e-07;1!UBERON:0000125;3.76e-07;9!UBERON:0002308;3.76e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.67e-78,56;UBERON:0005068,1.67e-78,56;UBERON:0006241,1.67e-78,56;UBERON:0007135,1.67e-78,56;UBERON:0000073,6.33e-65,53;UBERON:0002616,6.33e-65,53;UBERON:0003076,9.66e-62,15;UBERON:0003057,9.66e-62,15;UBERON:0001017,1.17e-56,81;UBERON:0003075,1.97e-52,82;UBERON:0007284,1.97e-52,82;UBERON:0001016,1.21e-50,89;UBERON:0002346,8.39e-50,86;UBERON:0001950,3.87e-49,20;UBERON:0000955,4.63e-49,68;UBERON:0006238,4.63e-49,68;UBERON:0002619,1.18e-44,22;UBERON:0004733,6.00e-44,12;UBERON:0002028,6.00e-44,12;UBERON:0007277,6.00e-44,12;UBERON:0003528,6.70e-44,34;UBERON:0002020,6.70e-44,34;UBERON:0004732,1.84e-40,13;UBERON:0010371,1.92e-40,104;UBERON:0002298,1.92e-39,6;UBERON:0000956,3.21e-39,25;UBERON:0000203,3.21e-39,25;UBERON:0010314,4.02e-36,132;UBERON:0002791,2.88e-35,32;UBERON:0001869,2.88e-35,32;UBERON:0001893,4.26e-33,34;UBERON:0002780,2.78e-31,41;UBERON:0001890,2.78e-31,41;UBERON:0003080,2.78e-31,41;UBERON:0006240,2.78e-31,41;UBERON:0007023,3.06e-28,114;UBERON:0002680,8.77e-27,9;UBERON:0001895,8.77e-27,9;UBERON:0010092,8.77e-27,9;UBERON:0004121,1.87e-24,171;UBERON:0000924,1.87e-24,171;UBERON:0006601,1.87e-24,171;UBERON:0002021,6.10e-21,5;UBERON:0000988,7.42e-21,3;UBERON:0001896,2.14e-20,3;UBERON:0005290,2.14e-20,3;UBERON:0010096,2.14e-20,3;UBERON:0002240,2.61e-20,3;UBERON:0005174,2.61e-20,3;UBERON:0001137,2.61e-20,3;UBERON:0003056,3.11e-20,61;UBERON:0000025,9.22e-20,192;UBERON:0011216,4.07e-19,223;UBERON:0001871,3.39e-15,6;UBERON:0004111,7.97e-15,240;UBERON:0002148,1.44e-14,2;UBERON:0006331,1.44e-14,2;UBERON:0009662,1.44e-14,2;UBERON:0002771,5.44e-14,2;UBERON:0001872,6.06e-12,5;UBERON:0002037,6.17e-11,6;UBERON:0006215,6.17e-11,6;UBERON:0000483,1.53e-10,306;UBERON:0000119,2.17e-10,309;UBERON:0000200,2.20e-10,6;UBERON:0001870,1.44e-09,3;UBERON:0003112,1.64e-07,1;UBERON:0011158,1.64e-07,1;UBERON:0003128,1.64e-07,1;UBERON:0001703,1.64e-07,1;UBERON:0002241,1.64e-07,1;UBERON:0004761,1.64e-07,1;UBERON:0009617,1.64e-07,1;UBERON:0000125,4.06e-07,9;UBERON:0002308,4.06e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09224469574562,0,0,0,0,0,3.97659059106519,0.984685914873589,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.649376687132959,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.120596438625408,80.8683202480541,95.982797620303,34.8746190365186,1.75508317723178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.134802265961354,0.802577647298789,0.937057782901357,0,0,0,0,0,1.83643656978294,0.063186579628488,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0,0,0,0,0,0,0.0882561266915003,1.12990370390266,0,0,1.39283751102933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.817220436669454,0,0,0,0,0,0.668245123238271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91275234173892,4.62814106099415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70836770862748,2.50381861413,1.72022758707021,5.76831067991632,1.8628920882415,0,0,0,0,0,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35039341457942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.770750701157514,5.6678630530234,1.43670473151436,1.23069818544453,2.01657356977374,0.760729777106397,1.13032951942296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,0,1.2401207790071,1.01465296310251,2.18789923607288,0,0,0,0,0,0,0,0,0,0,0,2.92269851800376,0.591954962065642,0,0,0.078493092850514,0.785577949580009,0,0,0,0,0.714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,2.74831853960923,1.48523200163543,3.8039015482506,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65833887891756,0.620597975171371,0,0.23806443146374,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09224469574562,0,0,0,0,0,3.97659059106519,0.984685914873589,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.649376687132959,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.120596438625408,80.8683202480541,95.982797620303,34.8746190365186,1.75508317723178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.134802265961354,0.802577647298789,0.937057782901357,0,0,0,0,0,1.83643656978294,0.063186579628488,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0,0,0,0,0,0,0.0882561266915003,1.12990370390266,0,0,1.39283751102933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.817220436669454,0,0,0,0,0,0.668245123238271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91275234173892,4.62814106099415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70836770862748,2.50381861413,1.72022758707021,5.76831067991632,1.8628920882415,0,0,0,0,0,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35039341457942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.770750701157514,5.6678630530234,1.43670473151436,1.23069818544453,2.01657356977374,0.760729777106397,1.13032951942296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,0,1.2401207790071,1.01465296310251,2.18789923607288,0,0,0,0,0,0,0,0,0,0,0,2.92269851800376,0.591954962065642,0,0,0.078493092850514,0.785577949580009,0,0,0,0,0.714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,2.74831853960923,1.48523200163543,3.8039015482506,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65833887891756,0.620597975171371,0,0.23806443146374,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p4@CDH18 | |short_description=p4@CDH18 | ||
}} | }} |
Latest revision as of 12:55, 17 September 2015
Short description: | p4@CDH18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDH18_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 140bp_to_ENST00000507632_5end |
EntrezGene: | CDH18 |
HGNC: | 1757 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data