FFCP PHASE1:Hg19::chr12:69202795..69202810,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:69202795..69202810,+
|short_description=p2@MDM2
|description=CAGE_peak_2_at_MDM2_5end
|association_with_transcript=0bp_to_ENST00000393415,ENST00000393416,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4193 | |EntrezGene=4193 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6973 | |HGNC=6973 | ||
|TSSclassifier=strong | |||
|UniProt=A7UKX8,E7EPE2,E7EMW5,A7UKY0,A7UKX7 | |UniProt=A7UKX8,E7EPE2,E7EMW5,A7UKY0,A7UKX7 | ||
|association_with_transcript=0bp_to_ENST00000393415,ENST00000393416,ENST00000523991,ENST00000539479,ENST00000543323,uc001sun.3,uc009zqy.1,uc009zqz.2,uc009zra.2_5end | |||
|cluster_id=chr12:69202795..69202810,+ | |||
|description=CAGE_peak_2_at_MDM2_5end | |||
|id=chr12:69202795..69202810,+ | |||
|ontology_enrichment_celltype=CL:0000144!5.38e-30!625;CL:0000548!5.30e-26!679;CL:0000004!5.30e-26!679;CL:0000255!5.30e-26!679;CL:0002371!1.22e-25!591;CL:0000012!6.30e-25!682;CL:0000220!2.75e-19!246;CL:0002321!3.33e-19!248;CL:0000003!4.82e-16!722;CL:0000222!1.26e-15!119;CL:0002139!3.36e-14!24;CL:0000063!1.86e-12!578;CL:0000055!9.40e-12!180;CL:0000213!3.66e-11!57;CL:0000215!3.66e-11!57;CL:0000071!1.01e-10!18;CL:0002546!1.01e-10!18;CL:0000115!1.65e-10!35;CL:0002078!4.22e-10!44;CL:0000066!2.66e-09!254;CL:0000076!9.20e-09!62;CL:0000057!4.96e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.89e-14;24!CL:0000071;8.95e-11;18!CL:0000115;2.50e-09;36!CL:0000213;1.28e-07;58!CL:0000215;1.28e-07;58!CL:0002078;1.38e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.70e-20,250;CL:0000222,2.07e-16,121;CL:0002139,2.93e-14,24;CL:0000213,8.74e-12,58;CL:0000215,8.74e-12,58;CL:0000115,5.11e-11,36;CL:0000071,9.11e-11,18;CL:0002546,9.11e-11,18;CL:0002078,1.40e-10,45;CL:0000076,3.69e-09,63;CL:0000066,4.72e-09,253;CL:0000057,2.65e-07,76;CL:0000192,7.34e-07,43;CL:0000514,7.34e-07,43 | |||
|ontology_enrichment_development_v019=CL:0002546;8.95e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!1.56e-17!69;UBERON:0002049!6.60e-16!79;UBERON:0007798!6.60e-16!79;UBERON:0004872!3.74e-14!84;UBERON:0001981!9.74e-14!60;UBERON:0007500!9.74e-14!60;UBERON:0004537!9.74e-14!60;UBERON:0006965!9.74e-14!60;UBERON:0004535!3.40e-11!110;UBERON:0001637!9.60e-11!42;UBERON:0003509!9.60e-11!42;UBERON:0004572!9.60e-11!42;UBERON:0001986!1.01e-10!18;UBERON:0004638!1.01e-10!18;UBERON:0004852!1.01e-10!18;UBERON:0001009!1.09e-10!113;UBERON:0003914!4.68e-10!118;UBERON:0000487!4.97e-10!22;UBERON:0006914!6.53e-10!25;UBERON:0004573!1.20e-09!33;UBERON:0004571!1.20e-09!33;UBERON:0000947!5.67e-09!21;UBERON:0010191!5.67e-09!21;UBERON:0000926!1.92e-07!448;UBERON:0004120!1.92e-07!448;UBERON:0006603!1.92e-07!448;UBERON:0003081!5.76e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.95e-11;18!UBERON:0001986;8.95e-11;18!UBERON:0004852;8.95e-11;18!UBERON:0000487;4.37e-10;22!UBERON:0006914;5.87e-10;25!UBERON:0000055;1.47e-09;65!UBERON:0004573;3.52e-09;33!UBERON:0004571;3.52e-09;33!UBERON:0000947;5.09e-09;21!UBERON:0010191;5.09e-09;21!UBERON:0007500;5.11e-09;56!UBERON:0001981;5.11e-09;56!UBERON:0004537;5.11e-09;56!UBERON:0001637;1.38e-08;42!UBERON:0003509;1.38e-08;42!UBERON:0004572;1.38e-08;42!UBERON:0002049;1.87e-07;75!UBERON:0007798;1.87e-07;75!UBERON:0000490;2.71e-07;33!UBERON:0003914;6.17e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.56e-17,68;UBERON:0002049,7.00e-16,78;UBERON:0007798,7.00e-16,78;UBERON:0004872,5.08e-14,83;UBERON:0007500,1.03e-13,59;UBERON:0001981,1.03e-13,59;UBERON:0004537,1.03e-13,59;UBERON:0006965,1.03e-13,59;UBERON:0004535,8.33e-11,109;UBERON:0001637,8.68e-11,42;UBERON:0003509,8.68e-11,42;UBERON:0004572,8.68e-11,42;UBERON:0004638,9.11e-11,18;UBERON:0001986,9.11e-11,18;UBERON:0004852,9.11e-11,18;UBERON:0001009,3.09e-10,112;UBERON:0000487,4.53e-10,22;UBERON:0006914,5.96e-10,25;UBERON:0003914,6.96e-10,117;UBERON:0000926,7.14e-10,315;UBERON:0004120,7.14e-10,315;UBERON:0006603,7.14e-10,315;UBERON:0004573,1.10e-09,33;UBERON:0004571,1.10e-09,33;UBERON:0000947,5.23e-09,21;UBERON:0010191,5.23e-09,21 | |||
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| ||
|short_description=p2@MDM2 | |||
}} | }} |
Latest revision as of 03:59, 20 September 2015
Short description: | p2@MDM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MDM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393415, ENST00000393416, ENST00000523991, ENST00000539479, ENST00000543323, uc001sun.3, uc009zqy.1, uc009zqz.2, uc009zra.2_5end |
EntrezGene: | MDM2 |
HGNC: | 6973 |
UniProt: | A7UKX8E7EPE2E7EMW5A7UKY0A7UKX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.70e-20 | 250 |
mesodermal cell | 2.07e-16 | 121 |
endothelial cell of vascular tree | 2.93e-14 | 24 |
lining cell | 8.74e-12 | 58 |
barrier cell | 8.74e-12 | 58 |
endothelial cell | 5.11e-11 | 36 |
blood vessel endothelial cell | 9.11e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.11e-11 | 18 |
meso-epithelial cell | 1.40e-10 | 45 |
squamous epithelial cell | 3.69e-09 | 63 |
epithelial cell | 4.72e-09 | 253 |
fibroblast | 2.65e-07 | 76 |
smooth muscle cell | 7.34e-07 | 43 |
smooth muscle myoblast | 7.34e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.56e-17 | 68 |
vasculature | 7.00e-16 | 78 |
vascular system | 7.00e-16 | 78 |
splanchnic layer of lateral plate mesoderm | 5.08e-14 | 83 |
epithelial tube open at both ends | 1.03e-13 | 59 |
blood vessel | 1.03e-13 | 59 |
blood vasculature | 1.03e-13 | 59 |
vascular cord | 1.03e-13 | 59 |
cardiovascular system | 8.33e-11 | 109 |
artery | 8.68e-11 | 42 |
arterial blood vessel | 8.68e-11 | 42 |
arterial system | 8.68e-11 | 42 |
blood vessel endothelium | 9.11e-11 | 18 |
endothelium | 9.11e-11 | 18 |
cardiovascular system endothelium | 9.11e-11 | 18 |
circulatory system | 3.09e-10 | 112 |
simple squamous epithelium | 4.53e-10 | 22 |
squamous epithelium | 5.96e-10 | 25 |
epithelial tube | 6.96e-10 | 117 |
mesoderm | 7.14e-10 | 315 |
mesoderm-derived structure | 7.14e-10 | 315 |
presumptive mesoderm | 7.14e-10 | 315 |
systemic artery | 1.10e-09 | 33 |
systemic arterial system | 1.10e-09 | 33 |
aorta | 5.23e-09 | 21 |
aortic system | 5.23e-09 | 21 |