FFCP PHASE1:Hg19::chr12:6875519..6875536,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:6875519..6875536,+
|short_description=p1@PTMS
|description=CAGE_peak_1_at_PTMS_5end
|association_with_transcript=-4bp_to_ENST00000389462,NM_002824,uc001qq...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5763 | |EntrezGene=5763 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9629 | |HGNC=9629 | ||
|TSSclassifier=strong | |||
|UniProt=F5GXR3,P20962 | |UniProt=F5GXR3,P20962 | ||
|association_with_transcript=-4bp_to_ENST00000389462,NM_002824,uc001qqq.2_5end | |||
|cluster_id=chr12:6875519..6875536,+ | |||
|coexpression_cluster_id=C3321 | |||
|description=CAGE_peak_1_at_PTMS_5end | |||
|id=chr12:6875519..6875536,+ | |||
|ontology_enrichment_celltype=CL:0002321!2.08e-22!248;CL:0000220!5.42e-22!246;CL:0000055!1.19e-18!180;CL:0000066!2.02e-14!254;CL:0000222!4.17e-11!119;CL:0000221!6.12e-10!71;CL:0000133!7.82e-10!59;CL:0000057!1.19e-09!75;CL:0000213!6.70e-08!57;CL:0000215!6.70e-08!57;CL:0000071!2.49e-07!18;CL:0002546!2.49e-07!18;CL:0000115!4.21e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000071;2.51e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.28e-23,250;CL:0000066,3.29e-14,253;CL:0000222,1.79e-11,121;CL:0000221,3.55e-10,72;CL:0000133,7.82e-10,59;CL:0000057,1.54e-09,76;CL:0000213,4.75e-08,58;CL:0000215,4.75e-08,58;CL:0000071,2.49e-07,18;CL:0002546,2.49e-07,18;CL:0000115,3.00e-07,36;CL:0002078,9.24e-07,45 | |||
|ontology_enrichment_development_v019=CL:0002546;2.51e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!8.38e-14!312;UBERON:0000475!1.29e-13!365;UBERON:0000481!1.53e-13!347;UBERON:0000483!4.48e-13!309;UBERON:0000468!3.77e-12!659;UBERON:0000477!3.40e-10!286;UBERON:0002100!4.52e-10!216;UBERON:0003914!8.48e-10!118;UBERON:0003104!6.04e-09!238;UBERON:0009142!6.04e-09!238;UBERON:0000490!8.65e-09!138;UBERON:0005256!1.33e-08!143;UBERON:0002049!2.00e-08!79;UBERON:0007798!2.00e-08!79;UBERON:0000922!3.01e-08!612;UBERON:0000025!3.47e-08!194;UBERON:0000467!4.86e-08!625;UBERON:0000480!6.40e-08!626;UBERON:0001048!1.40e-07!168;UBERON:0009569!1.52e-07!113;UBERON:0001986!2.49e-07!18;UBERON:0004638!2.49e-07!18;UBERON:0004852!2.49e-07!18;UBERON:0000064!2.55e-07!219;UBERON:0002050!3.36e-07!605;UBERON:0005423!3.36e-07!605;UBERON:0004111!4.34e-07!241;UBERON:0000923!5.13e-07!604;UBERON:0005291!5.13e-07!604;UBERON:0006598!5.13e-07!604;UBERON:0002532!5.13e-07!604;UBERON:0000487!6.83e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;2.72e-08;33!UBERON:0004638;2.51e-07;18!UBERON:0001986;2.51e-07;18!UBERON:0004852;2.51e-07;18!UBERON:0000487;6.86e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.12e-13,309;UBERON:0000483,5.93e-13,306;UBERON:0000490,5.68e-10,148;UBERON:0003914,1.35e-09,117;UBERON:0002100,5.97e-09,199;UBERON:0003104,1.14e-08,160;UBERON:0009142,1.14e-08,160;UBERON:0002049,1.61e-08,78;UBERON:0007798,1.61e-08,78;UBERON:0001048,5.18e-08,160;UBERON:0000025,8.60e-08,192;UBERON:0009569,2.37e-07,112;UBERON:0004638,2.49e-07,18;UBERON:0001986,2.49e-07,18;UBERON:0004852,2.49e-07,18;UBERON:0005256,4.78e-07,122;UBERON:0000922,5.40e-07,592;UBERON:0000487,6.83e-07,22;UBERON:0004111,6.95e-07,240;UBERON:0007503,9.46e-07,78 | |||
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02 | ||
|short_description=p1@PTMS | |||
}} | }} |
Latest revision as of 02:39, 20 September 2015
Short description: | p1@PTMS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTMS_5end |
Coexpression cluster: | C3321_Mesenchymal_teratocarcinoma_Renal_leiomyoblastoma_Fibroblast_Wilms_neuroectodermal |
Association with transcript: | -4bp_to_ENST00000389462, NM_002824, uc001qqq.2_5end |
EntrezGene: | PTMS |
HGNC: | 9629 |
UniProt: | F5GXR3P20962 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.28e-23 | 250 |
epithelial cell | 3.29e-14 | 253 |
mesodermal cell | 1.79e-11 | 121 |
ectodermal cell | 3.55e-10 | 72 |
neurectodermal cell | 7.82e-10 | 59 |
fibroblast | 1.54e-09 | 76 |
lining cell | 4.75e-08 | 58 |
barrier cell | 4.75e-08 | 58 |
blood vessel endothelial cell | 2.49e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.49e-07 | 18 |
endothelial cell | 3.00e-07 | 36 |
meso-epithelial cell | 9.24e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.12e-13 | 309 |
epithelium | 5.93e-13 | 306 |
unilaminar epithelium | 5.68e-10 | 148 |
epithelial tube | 1.35e-09 | 117 |
trunk | 5.97e-09 | 199 |
mesenchyme | 1.14e-08 | 160 |
entire embryonic mesenchyme | 1.14e-08 | 160 |
vasculature | 1.61e-08 | 78 |
vascular system | 1.61e-08 | 78 |
primordium | 5.18e-08 | 160 |
tube | 8.60e-08 | 192 |
subdivision of trunk | 2.37e-07 | 112 |
blood vessel endothelium | 2.49e-07 | 18 |
endothelium | 2.49e-07 | 18 |
cardiovascular system endothelium | 2.49e-07 | 18 |
trunk mesenchyme | 4.78e-07 | 122 |
embryo | 5.40e-07 | 592 |
simple squamous epithelium | 6.83e-07 | 22 |
anatomical conduit | 6.95e-07 | 240 |
epithelial vesicle | 9.46e-07 | 78 |