FFCP PHASE1:Hg19::chr4:82393052..82393075,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=153020 | |EntrezGene=153020 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24881 | |HGNC=24881 | ||
|TSSclassifier=strong | |||
|UniProt=Q0VAM2,D6RE71,Q8N437 | |UniProt=Q0VAM2,D6RE71,Q8N437 | ||
|association_with_transcript=0bp_to_ENST00000264400,ENST00000335927,ENST00000504863,NM_152545,uc003hmi.1,uc003hmj.1,uc003hmk.2,uc010ijq.1_5end | |association_with_transcript=0bp_to_ENST00000264400,ENST00000335927,ENST00000504863,NM_152545,uc003hmi.1,uc003hmj.1,uc003hmk.2,uc010ijq.1_5end | ||
|cluster_id=chr4:82393052..82393075,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_RASGEF1B_5end | |description=CAGE_peak_1_at_RASGEF1B_5end | ||
|id=chr4:82393052..82393075,- | |id=chr4:82393052..82393075,- | ||
|ontology_enrichment_celltype=CL:0000738!5.96e-43!140;CL:0002031!7.32e-36!124;CL:0002087!7.75e-34!119;CL:0000037!3.78e-33!172;CL:0000566!3.78e-33!172;CL:0000766!3.75e-30!76;CL:0000988!6.63e-30!182;CL:0002032!9.06e-30!165;CL:0000837!9.06e-30!165;CL:0000557!9.48e-29!71;CL:0002057!3.73e-28!42;CL:0000839!2.74e-27!70;CL:0002009!3.08e-26!65;CL:0002194!5.76e-25!63;CL:0000576!5.76e-25!63;CL:0000040!5.76e-25!63;CL:0000559!5.76e-25!63;CL:0000860!5.52e-24!45;CL:0000763!1.69e-20!112;CL:0000049!1.69e-20!112;CL:0000542!1.08e-08!53;CL:0000051!1.08e-08!53;CL:0000838!1.54e-08!52;CL:0000236!4.27e-07!14 | |ontology_enrichment_celltype=CL:0000738!5.96e-43!140;CL:0002031!7.32e-36!124;CL:0002087!7.75e-34!119;CL:0000037!3.78e-33!172;CL:0000566!3.78e-33!172;CL:0000766!3.75e-30!76;CL:0000988!6.63e-30!182;CL:0002032!9.06e-30!165;CL:0000837!9.06e-30!165;CL:0000557!9.48e-29!71;CL:0002057!3.73e-28!42;CL:0000839!2.74e-27!70;CL:0002009!3.08e-26!65;CL:0002194!5.76e-25!63;CL:0000576!5.76e-25!63;CL:0000040!5.76e-25!63;CL:0000559!5.76e-25!63;CL:0000860!5.52e-24!45;CL:0000763!1.69e-20!112;CL:0000049!1.69e-20!112;CL:0000542!1.08e-08!53;CL:0000051!1.08e-08!53;CL:0000838!1.54e-08!52;CL:0000236!4.27e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.13e-23;33!CL:0002057;3.13e-23;33!CL:0000473;1.29e-22;39!CL:0000234;1.29e-22;39!CL:0000576;3.62e-19;48!CL:0000766;9.29e-17;69!CL:0002087;2.25e-11;104!CL:0000738;4.08e-11;136!CL:0000236;9.23e-08;13!CL:0000763;7.04e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.38e-51,136;CL:0002031,5.18e-43,120;CL:0002087,1.05e-40,115;CL:0000037,4.51e-38,168;CL:0000766,5.28e-38,72;CL:0000557,1.67e-36,67;CL:0000988,3.00e-35,177;CL:0000473,3.32e-35,48;CL:0000234,3.32e-35,48;CL:0000839,9.58e-35,66;CL:0002032,3.16e-34,161;CL:0000837,3.16e-34,161;CL:0002009,1.10e-33,61;CL:0002194,3.34e-32,59;CL:0000576,3.34e-32,59;CL:0000040,3.34e-32,59;CL:0000559,3.34e-32,59;CL:0000860,2.19e-31,42;CL:0002057,2.19e-31,42;CL:0000763,2.95e-24,108;CL:0000049,2.95e-24,108;CL:0000542,3.05e-09,53;CL:0000051,3.05e-09,53;CL:0000838,4.55e-09,52;CL:0000236,9.08e-08,14;CL:0002393,2.57e-07,9;CL:0002397,2.57e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;9.65e-23;42!CL:0000049;4.33e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.19e-29!102;UBERON:0003061!5.19e-29!102;UBERON:0002371!5.34e-24!80;UBERON:0002193!7.55e-24!112;UBERON:0007023!5.34e-23!115;UBERON:0001474!2.69e-21!86;UBERON:0002405!1.02e-16!115;UBERON:0004765!9.42e-15!101;UBERON:0001434!9.42e-15!101;UBERON:0001049!1.10e-10!57;UBERON:0005068!1.10e-10!57;UBERON:0006241!1.10e-10!57;UBERON:0007135!1.10e-10!57;UBERON:0003080!2.41e-09!42;UBERON:0002780!5.69e-09!41;UBERON:0001890!5.69e-09!41;UBERON:0006240!5.69e-09!41;UBERON:0005743!1.04e-08!86;UBERON:0001017!1.31e-08!82;UBERON:0002616!3.57e-08!59;UBERON:0002020!1.67e-07!34;UBERON:0003528!1.67e-07!34;UBERON:0000073!1.68e-07!94;UBERON:0001016!1.68e-07!94;UBERON:0001893!2.16e-07!34;UBERON:0002791!2.85e-07!33;UBERON:0002346!4.80e-07!90;UBERON:0001869!9.26e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.53e-07;114!UBERON:0002780;2.50e-07;41!UBERON:0001890;2.50e-07;41!UBERON:0003528;9.60e-07;34!UBERON:0002020;9.60e-07;34 | |||
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|phase1_expression=0,0.428201047781966,0.704772020479856,0,0.446961094427288,0,2.53299878168311,0.631719873426831,2.08948502559871,0.245733936501509,0.697801167972428,0.655324116390517,0.527533956456907,0,0,1.34465029290355,0,0,0,0,0,0.313454721478088,0.85870796139317,0,0.251085279189606,0.0764134057479513,0.0821005894499457,0,123.909747207405,188.844063863829,142.585649574106,1.83884244895785,0,0,20.1414721508784,9.66750780914466,41.3976619462135,201.100333297072,181.693269407948,130.857555041659,83.2965564172518,64.7787332037959,65.1666186114492,93.3456692964805,157.196392574545,111.346084085208,396.291507924192,451.051173159943,537.959966244795,415.427814513185,462.626235991556,588.3677879628,576.07003251089,610.6285106703,609.419189674538,246.220980121727,283.276583760044,415.288999254516,440.148637229358,539.802623541989,467.994776084898,121.055427168525,201.458294197848,164.52275370562,368.275523819673,303.55109520976,321.999102730712,422.349006296585,405.713710530917,620.074151633108,345.07771650102,528.846685278143,559.189038608043,93.3748365498783,112.042466081578,73.7998432189483,46.279396032356,50.7597897804291,49.3427551160036,108.019829877933,95.6789217327623,83.1121899629084,40.4791362261042,48.6063364023297,34.6908609006786,32.8582271376211,30.0296990277009,45.9801951963587,46.9341859677252,58.1972790266572,147.995371968457,173.234970864427,186.549335325112,63.4422377179324,177.120705902165,18.7002700190305,27.5393678159366,31.047850257184,27.7562023649337,13.0405466404729,45.3031950620691,23.1989424810019,13.6378709885538,0.445641827540694,5.59751224202191,3.54454231333794,2.70803863765016,4.35510487067296,4.55207716459574,0.986627427622057,0.829050053357545,1.44901542867526,42.1133839380252,38.258338416829,25.0885257131944,0.339928028092699,33.3401829433671,24.0539211837841,26.3140479700283,4.14135038621326,3.90650072313851,8.55406840003537,6.92645547757755,7.6791966692651,7.49584359314075,5.91943130110042,5.74789597844733,37.4988542398002,38.7788283886086,27.0821635260834,2.43806866313962,3.35350429851818,0.639312809217652,0,0,0,4.7717156823066,0.486634870302636,2.17430079477356,0.665188192387692,0.87834785693126,8.51363990735132,0.364295288292542,0.370784442784429,10.7100639906045,6.96518949197069,11.1684686835847,151.441546433892,155.582615732195,115.523282913495,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,15.8136500923276,27.1446184903828,0.436094052142534,0,0,0,0,0.709336764396714,0,0,0,4.04574346019696,0.269421344139376,0.163461903113459,1.66493170409425,4.03323147135999,0,0.312160076830321,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.773043412653187,0.818238361772504,0,1.34171076742555,1.85541675650079,2.5562667431294,3.21349270547648,2.52320850875628,0.36497735907583,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0,0.269662616320329,0,0,0,0,0,0,43.0967118394225,17.6908899001973,31.9026549607958,9.27072508770766,3.19769940212095,0,0.768251997860379,0,0.201057944823262,0.925884451585296,0,0,0,4.521285794028,0.352226082707465,0,0,0.190254152234598,2.37061319387782,0.858486162094873,73.3726678140444,88.2196079574926,44.4407175243297,0.93733833986777,0,0.850650583454319,2.95543124919399,0,0.383382679165211,10.8385912337108,6.0753419469126,146.373649571785,75.2306156836539,166.261284822542,0.888970520090367,0.381988425558278,0,0,0.102827492703324,0,0,0,0.43596006883328,0.07333828582095,0,0,0,0,0,0,0,0,2.43062589218851,0,0,0.65147236858747,3.19852753868291,0,1.20575750823834,0,0.099972991182057,114.326353802719,86.8904768177579,94.8752727673642,0,0,0,0.289562613335158,0.821905290201534,0.179060963239896,0.336255431980582,39.2091212801835,36.6566877261179,37.0911374848473,1.52456774533478,11.712586847186,6.95959931499926,13.7363337574166,13.3967137847164,11.2351053592077,5.9832291840805,7.87389475528467,0.49076596687656,0,0,0,0,0,0,1.50473049863859,2.27407504055985,0,0,0.368738337083406,0,0,0.343143423810856,34.5302603625222,85.4228235241723,58.9136119075013,2.12189300012382,0,0.907170879989041,0,0,0,0.896974044789907,0.511707249066704,0.321707842287215,1.48418066444991,0,0,0,0,0,1.81289174387433,0,4.14364450211533,0,0,0,0.451199612907412,5.08301224889137,0.784349769176855,0,0.422206515571503,0,0,0,0,0.270946437543853,0,0.764628819135115,0.831076008928724,0,8.33187531254551,6.53588627562251,1.02580050046556,1.31205858279882,1.62689197332152,28.5423602264191,1.64825036673018,1.65018999841176,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0.255679882248303,0.0890320356467374,0.330569830721956,0.384380134730212,0.127612712494584,0.4046311234222,0,0,0,0.924100740528266,0,0,0,0,0,0,0,0,0,0.636406495851874,0,0,0.54907405947211,0,0,0,0.421258456238981,0,0.243713489631284,0,0,0,1.13008116620243,0,0,0.438450885253763,0,0,0,2.168764486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| ||
|short_description=p1@RASGEF1B | |short_description=p1@RASGEF1B | ||
}} | }} |
Latest revision as of 23:25, 18 September 2015
Short description: | p1@RASGEF1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RASGEF1B_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000264400, ENST00000335927, ENST00000504863, NM_152545, uc003hmi.1, uc003hmj.1, uc003hmk.2, uc010ijq.1_5end |
EntrezGene: | RASGEF1B |
HGNC: | 24881 |
UniProt: | Q0VAM2D6RE71Q8N437 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.38e-51 | 136 |
hematopoietic lineage restricted progenitor cell | 5.18e-43 | 120 |
nongranular leukocyte | 1.05e-40 | 115 |
hematopoietic stem cell | 4.51e-38 | 168 |
myeloid leukocyte | 5.28e-38 | 72 |
granulocyte monocyte progenitor cell | 1.67e-36 | 67 |
hematopoietic cell | 3.00e-35 | 177 |
defensive cell | 3.32e-35 | 48 |
phagocyte | 3.32e-35 | 48 |
myeloid lineage restricted progenitor cell | 9.58e-35 | 66 |
hematopoietic oligopotent progenitor cell | 3.16e-34 | 161 |
hematopoietic multipotent progenitor cell | 3.16e-34 | 161 |
macrophage dendritic cell progenitor | 1.10e-33 | 61 |
monopoietic cell | 3.34e-32 | 59 |
monocyte | 3.34e-32 | 59 |
monoblast | 3.34e-32 | 59 |
promonocyte | 3.34e-32 | 59 |
classical monocyte | 2.19e-31 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.19e-31 | 42 |
myeloid cell | 2.95e-24 | 108 |
common myeloid progenitor | 2.95e-24 | 108 |
lymphocyte | 3.05e-09 | 53 |
common lymphoid progenitor | 3.05e-09 | 53 |
lymphoid lineage restricted progenitor cell | 4.55e-09 | 52 |
B cell | 9.08e-08 | 14 |
intermediate monocyte | 2.57e-07 | 9 |
CD14-positive, CD16-positive monocyte | 2.57e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.23e-35 | 98 |
blood island | 2.23e-35 | 98 |
bone marrow | 9.30e-31 | 76 |
hemolymphoid system | 3.49e-30 | 108 |
bone element | 7.49e-28 | 82 |
immune system | 4.69e-26 | 93 |
adult organism | 3.79e-25 | 114 |
skeletal element | 2.72e-22 | 90 |
skeletal system | 4.75e-18 | 100 |
neural tube | 3.97e-11 | 56 |
neural rod | 3.97e-11 | 56 |
future spinal cord | 3.97e-11 | 56 |
neural keel | 3.97e-11 | 56 |
regional part of nervous system | 3.95e-10 | 53 |
regional part of brain | 3.95e-10 | 53 |
central nervous system | 1.68e-09 | 81 |
regional part of forebrain | 1.75e-09 | 41 |
forebrain | 1.75e-09 | 41 |
anterior neural tube | 1.75e-09 | 41 |
future forebrain | 1.75e-09 | 41 |
nervous system | 1.95e-08 | 89 |
brain grey matter | 7.57e-08 | 34 |
gray matter | 7.57e-08 | 34 |
telencephalon | 1.00e-07 | 34 |
neurectoderm | 1.21e-07 | 86 |
brain | 1.30e-07 | 68 |
future brain | 1.30e-07 | 68 |
regional part of telencephalon | 3.00e-07 | 32 |
cerebral hemisphere | 4.99e-07 | 32 |
neural plate | 8.20e-07 | 82 |
presumptive neural plate | 8.20e-07 | 82 |