FFCP PHASE1:Hg19::chr4:77357272..77357284,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57619 | |EntrezGene=57619 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |HGNC=30422 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=7bp_to_ENST00000497440_5end | |association_with_transcript=7bp_to_ENST00000497440_5end | ||
|cluster_id=chr4:77357272..77357284,+ | |||
|coexpression_cluster_id=C1944 | |||
|description=CAGE_peak_11_at_SHROOM3_5end | |description=CAGE_peak_11_at_SHROOM3_5end | ||
|id=chr4:77357272..77357284,+ | |id=chr4:77357272..77357284,+ | ||
|ontology_enrichment_celltype=CL:0002319!5.63e-19!25;CL:0000047!2.59e-16!8;CL:0000128!4.14e-15!7;CL:0000126!4.14e-15!7;CL:0000127!4.14e-15!7;CL:0002453!4.14e-15!7;CL:0000540!2.72e-12!6;CL:0000031!2.72e-12!6;CL:0000404!2.72e-12!6;CL:0000133!3.43e-11!59;CL:0000243!8.51e-09!15;CL:0000125!8.51e-09!15;CL:0000030!8.51e-09!15;CL:0000339!8.51e-09!15;CL:0000221!2.15e-08!71;CL:0002605!4.67e-08!3;CL:0000064!9.26e-08!3;CL:0005012!9.26e-08!3;CL:0000067!9.26e-08!3;CL:0002304!9.26e-08!3;CL:0000095!1.15e-07!17;CL:0000123!1.15e-07!17;CL:0002603!6.87e-07!3 | |ontology_enrichment_celltype=CL:0002319!5.63e-19!25;CL:0000047!2.59e-16!8;CL:0000128!4.14e-15!7;CL:0000126!4.14e-15!7;CL:0000127!4.14e-15!7;CL:0002453!4.14e-15!7;CL:0000540!2.72e-12!6;CL:0000031!2.72e-12!6;CL:0000404!2.72e-12!6;CL:0000133!3.43e-11!59;CL:0000243!8.51e-09!15;CL:0000125!8.51e-09!15;CL:0000030!8.51e-09!15;CL:0000339!8.51e-09!15;CL:0000221!2.15e-08!71;CL:0002605!4.67e-08!3;CL:0000064!9.26e-08!3;CL:0005012!9.26e-08!3;CL:0000067!9.26e-08!3;CL:0002304!9.26e-08!3;CL:0000095!1.15e-07!17;CL:0000123!1.15e-07!17;CL:0002603!6.87e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002605;4.64e-21;3!CL:0000064;3.38e-20;3!CL:0000067;3.38e-20;3!CL:0005012;3.38e-20;3!CL:0002304;3.38e-20;3!CL:0002319;1.74e-14;25!CL:0000047;5.09e-14;2!CL:0000128;2.57e-09;7!CL:0000126;2.57e-09;7!CL:0000127;2.57e-09;7!CL:0000306;1.81e-07;4!CL:0002222;1.81e-07;4!CL:0002224;1.81e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,4.97e-21,3;CL:0000064,3.86e-20,3;CL:0000067,3.86e-20,3;CL:0005012,3.86e-20,3;CL:0002304,3.86e-20,3;CL:0002319,1.97e-14,25;CL:0000047,4.54e-13,8;CL:0000133,5.78e-11,59;CL:0000128,2.64e-09,7;CL:0000126,2.64e-09,7;CL:0000127,2.64e-09,7;CL:0002453,2.64e-09,7;CL:0000221,1.08e-08,72;CL:0000306,1.70e-07,4;CL:0002222,1.70e-07,4;CL:0002224,1.70e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.60e-09;3!UBERON:0003057;1.60e-09;3!CL:0000133;4.39e-08;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;1.54e-13;2!DOID:6193;6.52e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,7.55e-14,2;DOID:6193,7.45e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005743!6.69e-60!86;UBERON:0003075!1.49e-56!86;UBERON:0007284!1.49e-56!86;UBERON:0001017!9.45e-56!82;UBERON:0002346!2.40e-53!90;UBERON:0000073!8.73e-53!94;UBERON:0001016!8.73e-53!94;UBERON:0001049!2.16e-44!57;UBERON:0005068!2.16e-44!57;UBERON:0006241!2.16e-44!57;UBERON:0007135!2.16e-44!57;UBERON:0004121!1.85e-37!169;UBERON:0000924!3.51e-36!173;UBERON:0006601!3.51e-36!173;UBERON:0000955!1.14e-35!69;UBERON:0006238!1.14e-35!69;UBERON:0002616!3.96e-35!59;UBERON:0003056!1.34e-34!61;UBERON:0001893!5.41e-31!34;UBERON:0000033!5.72e-31!123;UBERON:0002791!1.27e-29!33;UBERON:0002780!5.19e-29!41;UBERON:0001890!5.19e-29!41;UBERON:0006240!5.19e-29!41;UBERON:0000153!7.41e-29!129;UBERON:0007811!7.41e-29!129;UBERON:0002020!2.03e-28!34;UBERON:0003528!2.03e-28!34;UBERON:0003080!3.84e-28!42;UBERON:0001869!4.16e-28!32;UBERON:0000956!7.83e-26!25;UBERON:0000203!7.83e-26!25;UBERON:0002619!3.32e-20!22;UBERON:0001950!5.70e-20!20;UBERON:0003076!1.08e-17!15;UBERON:0003057!1.08e-17!15;UBERON:0007023!1.83e-16!115;UBERON:0004733!1.79e-12!12;UBERON:0002028!1.79e-12!12;UBERON:0007277!1.79e-12!12;UBERON:0007625!4.22e-12!11;UBERON:0004732!2.30e-11!13;UBERON:0000064!5.49e-11!219;UBERON:0000025!1.31e-10!194;UBERON:0001872!4.95e-10!5;UBERON:0000483!1.45e-09!309;UBERON:0000119!2.49e-09!312;UBERON:0002298!1.91e-08!8;UBERON:0001871!5.42e-08!7;UBERON:0000019!6.38e-08!19;UBERON:0000047!6.38e-08!19;UBERON:0004088!6.38e-08!19;UBERON:0003072!6.38e-08!19;UBERON:0003071!6.38e-08!19;UBERON:0004128!6.38e-08!19;UBERON:0001778!9.26e-08!3;UBERON:0001775!9.26e-08!3;UBERON:0002680!1.09e-07!9;UBERON:0001895!1.09e-07!9;UBERON:0010092!1.09e-07!9;UBERON:0000475!1.22e-07!365;UBERON:0000200!1.41e-07!6;UBERON:0000970!1.99e-07!20;UBERON:0000481!2.12e-07!347;UBERON:0002240!2.76e-07!3;UBERON:0000922!4.98e-07!612;UBERON:0001896!5.16e-07!3;UBERON:0005290!5.16e-07!3;UBERON:0010096!5.16e-07!3;UBERON:0002104!5.56e-07!21;UBERON:0001456!5.56e-07!21;UBERON:0004111!7.70e-07!241;UBERON:0000477!9.95e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;9.95e-21;11!UBERON:0001778;3.38e-20;3!UBERON:0001775;3.38e-20;3!UBERON:0000488;2.70e-15;4!UBERON:0000019;8.60e-12;19!UBERON:0000047;8.60e-12;19!UBERON:0004088;8.60e-12;19!UBERON:0010230;8.60e-12;19!UBERON:0001801;1.66e-11;14!UBERON:0000970;3.55e-11;20!UBERON:0002104;1.28e-10;21!UBERON:0001456;1.28e-10;21!UBERON:0002203;2.27e-10;6!UBERON:0001768;2.27e-10;6!UBERON:0002200;2.27e-10;6!UBERON:0000020;1.20e-09;23!UBERON:0002240;1.60e-09;3!UBERON:0005174;1.60e-09;3!UBERON:0001137;1.60e-09;3!UBERON:0001896;2.51e-09;3!UBERON:0005290;2.51e-09;3!UBERON:0001032;3.18e-09;24!UBERON:0004456;3.18e-09;24!UBERON:0010077;1.81e-07;4!UBERON:0005389;1.81e-07;4!UBERON:0000484;1.81e-07;4!UBERON:0000965;1.81e-07;4!UBERON:0001803;1.81e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.13e-20,11;UBERON:0001778,3.86e-20,3;UBERON:0001775,3.86e-20,3;UBERON:0000488,2.98e-15,4;UBERON:0003075,1.96e-14,82;UBERON:0007284,1.96e-14,82;UBERON:0002346,1.24e-13,86;UBERON:0001017,2.06e-12,81;UBERON:0001801,1.66e-11,14;UBERON:0000019,3.79e-11,20;UBERON:0000047,3.79e-11,20;UBERON:0010312,3.79e-11,20;UBERON:0004088,3.79e-11,20;UBERON:0010230,3.79e-11,20;UBERON:0003072,3.79e-11,20;UBERON:0004128,3.79e-11,20;UBERON:0003071,3.79e-11,20;UBERON:0001016,6.22e-11,89;UBERON:0010371,8.61e-11,104;UBERON:0004121,9.02e-11,171;UBERON:0000924,9.02e-11,171;UBERON:0006601,9.02e-11,171;UBERON:0000970,1.36e-10,21;UBERON:0002104,1.36e-10,21;UBERON:0010314,1.57e-10,132;UBERON:0003076,2.19e-10,15;UBERON:0003057,2.19e-10,15;UBERON:0002203,2.42e-10,6;UBERON:0001768,2.42e-10,6;UBERON:0002200,2.42e-10,6;UBERON:0001456,4.37e-10,22;UBERON:0002240,1.44e-09,3;UBERON:0005174,1.44e-09,3;UBERON:0001137,1.44e-09,3;UBERON:0000020,3.36e-09,24;UBERON:0001032,3.36e-09,24;UBERON:0004456,3.36e-09,24;UBERON:0001896,3.38e-09,3;UBERON:0005290,3.38e-09,3;UBERON:0010096,3.38e-09,3;UBERON:0003056,8.83e-09,61;UBERON:0001049,1.00e-07,56;UBERON:0005068,1.00e-07,56;UBERON:0006241,1.00e-07,56;UBERON:0007135,1.00e-07,56;UBERON:0010077,1.70e-07,4;UBERON:0005389,1.70e-07,4;UBERON:0000484,1.70e-07,4;UBERON:0002546,1.70e-07,4;UBERON:0000965,1.70e-07,4;UBERON:0001803,1.70e-07,4;UBERON:0003073,1.70e-07,4;UBERON:0005426,1.70e-07,4;UBERON:0005085,5.32e-07,31 | |||
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| ||
|short_description=p11@SHROOM3 | |short_description=p11@SHROOM3 | ||
}} | }} |
Latest revision as of 18:00, 18 September 2015
Short description: | p11@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SHROOM3_5end |
Coexpression cluster: | C1944_Astrocyte_Ciliary_Lens_colon_teratocarcinoma_gastric_Neural |
Association with transcript: | 7bp_to_ENST00000497440_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 4.97e-21 | 3 |
ciliated cell | 3.86e-20 | 3 |
ciliated epithelial cell | 3.86e-20 | 3 |
multi-ciliated epithelial cell | 3.86e-20 | 3 |
non-pigmented ciliary epithelial cell | 3.86e-20 | 3 |
neural cell | 1.97e-14 | 25 |
neuronal stem cell | 4.54e-13 | 8 |
neurectodermal cell | 5.78e-11 | 59 |
oligodendrocyte | 2.64e-09 | 7 |
macroglial cell | 2.64e-09 | 7 |
astrocyte | 2.64e-09 | 7 |
oligodendrocyte precursor cell | 2.64e-09 | 7 |
ectodermal cell | 1.08e-08 | 72 |
crystallin accumulating cell | 1.70e-07 | 4 |
vertebrate lens cell | 1.70e-07 | 4 |
lens epithelial cell | 1.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 7.55e-14 | 2 |
epithelioid sarcoma | 7.45e-08 | 1 |