FFCP PHASE1:Hg19::chr1:202129105..202129140,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5778 | |EntrezGene=5778 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9659 | |HGNC=9659 | ||
|TSSclassifier=strong | |||
|UniProt=P35236 | |UniProt=P35236 | ||
|association_with_transcript=0bp_to_ENST00000367279,NM_080588,uc001gxl.1_5end | |association_with_transcript=0bp_to_ENST00000367279,NM_080588,uc001gxl.1_5end | ||
|cluster_id=chr1:202129105..202129140,- | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_2_at_PTPN7_5end | |description=CAGE_peak_2_at_PTPN7_5end | ||
|id=chr1:202129105..202129140,- | |id=chr1:202129105..202129140,- | ||
|ontology_enrichment_celltype=CL:0000037!2.38e-75!172;CL:0000566!2.38e-75!172;CL:0000988!1.02e-74!182;CL:0002032!6.70e-68!165;CL:0000837!6.70e-68!165;CL:0000738!7.22e-41!140;CL:0000763!6.77e-40!112;CL:0000049!6.77e-40!112;CL:0002031!1.76e-28!124;CL:0002087!7.38e-27!119;CL:0000542!3.84e-24!53;CL:0000051!3.84e-24!53;CL:0000838!3.57e-23!52;CL:0000134!6.22e-18!358;CL:0002320!5.71e-17!365;CL:0000219!1.25e-13!390;CL:0000084!2.19e-13!25;CL:0000827!2.19e-13!25;CL:0000766!3.99e-13!76;CL:0000034!2.71e-10!444;CL:0000048!3.52e-10!430;CL:0000094!4.09e-10!8;CL:0000723!1.22e-09!436;CL:0000839!5.56e-09!70;CL:0000081!7.20e-09!11;CL:0000945!1.54e-08!24;CL:0000826!1.54e-08!24;CL:0000557!3.16e-08!71;CL:0000080!3.62e-08!6;CL:0002274!2.32e-07!5;CL:0000457!2.32e-07!5;CL:0002191!2.32e-07!5;CL:0000097!2.32e-07!5;CL:0000831!2.32e-07!5;CL:0002028!2.32e-07!5 | |ontology_enrichment_celltype=CL:0000037!2.38e-75!172;CL:0000566!2.38e-75!172;CL:0000988!1.02e-74!182;CL:0002032!6.70e-68!165;CL:0000837!6.70e-68!165;CL:0000738!7.22e-41!140;CL:0000763!6.77e-40!112;CL:0000049!6.77e-40!112;CL:0002031!1.76e-28!124;CL:0002087!7.38e-27!119;CL:0000542!3.84e-24!53;CL:0000051!3.84e-24!53;CL:0000838!3.57e-23!52;CL:0000134!6.22e-18!358;CL:0002320!5.71e-17!365;CL:0000219!1.25e-13!390;CL:0000084!2.19e-13!25;CL:0000827!2.19e-13!25;CL:0000766!3.99e-13!76;CL:0000034!2.71e-10!444;CL:0000048!3.52e-10!430;CL:0000094!4.09e-10!8;CL:0000723!1.22e-09!436;CL:0000839!5.56e-09!70;CL:0000081!7.20e-09!11;CL:0000945!1.54e-08!24;CL:0000826!1.54e-08!24;CL:0000557!3.16e-08!71;CL:0000080!3.62e-08!6;CL:0002274!2.32e-07!5;CL:0000457!2.32e-07!5;CL:0002191!2.32e-07!5;CL:0000097!2.32e-07!5;CL:0000831!2.32e-07!5;CL:0002028!2.32e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000094;8.84e-13;8!CL:0000763;3.52e-12;100!CL:0000081;6.72e-12;11!CL:0000097;1.50e-11;5!CL:0000084;1.80e-10;25!CL:0000988;4.92e-10;177!CL:0000542;1.46e-08;53!CL:0000623;5.17e-07;3!CL:0000767;7.69e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,8.71e-58,177;CL:0000037,1.10e-55,168;CL:0002032,4.95e-48,161;CL:0000837,4.95e-48,161;CL:0000763,2.32e-30,108;CL:0000049,2.32e-30,108;CL:0000738,6.18e-19,136;CL:0000134,8.41e-17,354;CL:0002320,3.98e-16,361;CL:0000542,1.59e-15,53;CL:0000051,1.59e-15,53;CL:0000838,2.27e-14,52;CL:0000219,9.28e-14,386;CL:0000094,9.11e-13,8;CL:0000081,6.89e-12,11;CL:0000034,1.05e-11,441;CL:0000097,1.80e-11,5;CL:0002028,1.80e-11,5;CL:0000048,6.86e-11,427;CL:0000723,1.69e-10,433;CL:0000084,1.78e-10,25;CL:0000827,1.78e-10,25;CL:0002031,3.93e-09,120;CL:0002087,9.62e-09,115;CL:0000623,5.29e-07,3;CL:0000825,5.29e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000049;1.90e-09;108!CL:0000051;1.46e-08;53 | |||
|ontology_enrichment_disease=DOID:2531!8.45e-52!51;DOID:0060083!8.45e-52!51;DOID:1240!1.16e-47!39;DOID:8692!4.43e-38!31;DOID:1036!6.39e-12!8;DOID:0050686!1.48e-09!137;DOID:0060058!7.61e-09!10 | |ontology_enrichment_disease=DOID:2531!8.45e-52!51;DOID:0060083!8.45e-52!51;DOID:1240!1.16e-47!39;DOID:8692!4.43e-38!31;DOID:1036!6.39e-12!8;DOID:0050686!1.48e-09!137;DOID:0060058!7.61e-09!10 | ||
|ontology_enrichment_disease_v019=DOID:8692;2.09e-62;31!DOID:1240;2.77e-59;39!DOID:2531;1.67e-44;51!DOID:0060083;1.67e-44;51!DOID:1036;3.02e-19;8!DOID:0060058;1.89e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,2.09e-77,39;DOID:2531,1.51e-73,51;DOID:0060083,1.51e-73,51;DOID:8692,1.40e-64,31;DOID:0050686,2.94e-19,137;DOID:1036,3.00e-19,8;DOID:0060058,1.66e-07,10;DOID:162,9.14e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0002390!5.70e-16!102;UBERON:0003061!5.70e-16!102;UBERON:0002384!1.15e-15!375;UBERON:0002193!9.18e-15!112;UBERON:0000178!1.70e-09!15;UBERON:0000179!1.70e-09!15;UBERON:0000463!1.70e-09!15;UBERON:0002371!9.82e-08!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.30e-15,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98674854944673,3.03772180964799,2.75487734597877,2.36018566109342,2.30297638858328,1.23852898652861,0,0,0,1.23947520928483,0.710846162437108,2.93600439334847,0,0.802177789880567,0.434021741431704,0,0.32389366601898,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0.575384784644301,0.256160706529101,0,0.689491361473237,0.645484683583826,0,0.564727018627814,0.272906150057846,0,0,0.962787081228281,0.639337125799041,0,0,0.852449501065388,1.16083695451434,0,0.622822248995575,0.502497330513487,0,0,0,0.368277635987565,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0.764546456250458,1.32171328579026,1.12101712596307,1.31692042387539,0.196709770113833,1.57204305099666,0.411202997999018,0.83593247695339,0.32592226663359,0.473447805734733,1.94826728407911,2.78526142212934,0.294605907474837,0.443067789167242,0.812411591295047,2.5618263945135,2.21100890851793,4.1109476150919,3.03985019564433,2.60822777161547,0.444859689486181,0.267540828089713,0,0.906474741580529,0,0,0.506039384039006,0.637130828648193,0,0,0.150575119077773,0,0,0.236777252044017,0,2.01606743224732,2.67440195783507,2.02754165435919,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.174129737299267,0,0,0.571994910780128,1.48583000531826,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9195036841956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,184.748714210979,11.8865385917855,3.52457796419313,1.29707958075265,2.27236380167484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81089489577993,4.13764596424047,1.2937654491571,2.69520376187472,0,0,0,0,0,0.749007023947182,5.9832291840805,7.87389475528467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,1.07857100409308,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.522870902049801,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.714695326373367,0.411362273086194,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,2.78704762688578,0.577076851905779,30.4487089531212,13.5512331819499,11.974762285969,6.70268795463284,14.393803625224,17.529584774826,5.33514638415572,7.30350972906215,10.1841932252465,5.01268954180134,4.74016977844489,8.67175605559977,6.86119004449562,7.23938604073555,2.74804275804612,6.75929681478608,6.03925491309523,8.17560794388352,10.3555690563081,15.8691519120288,0,3.51592382018778,22.9819657918496,14.098700508785,0,0,0,5.6836125981514,0,0,0,0,0,0,0,11.0418595731929,0,0.597743964753209,1.38141957765574,0,0,1.10776324914963,0,0,0,4.09257896181497,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,18.994611023798,19.114343418518,13.3101439764137,12.9401272649708,12.754440610164,4.93359705082881,16.370467634979,0,0,0,0,0,0.176915129006678,0,9.4886761177799,8.89660360414821,7.62280231389824,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0.869767748958028,0,0,0,0,0,0,0,3.83239764200917,0,5.5206344398656,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,1.6087933092499,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,7.47041938818985,0,0,0,1.32506888912221,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.265729680626726,0,0,0,0,1.79988656269437,12.4829323742145,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49837315502381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61327582578091,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.644578879735772,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0,0.535928260312357,0,0,0.213233981900981,0.714193294391221,2.45437857376823,5.21427600085206,0,0,0,0,0,0.740872583160463,0,0,0,0,0,0,0,0,0.406896178315738,0,0.603821380773079,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98674854944673,3.03772180964799,2.75487734597877,2.36018566109342,2.30297638858328,1.23852898652861,0,0,0,1.23947520928483,0.710846162437108,2.93600439334847,0,0.802177789880567,0.434021741431704,0,0.32389366601898,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0.575384784644301,0.256160706529101,0,0.689491361473237,0.645484683583826,0,0.564727018627814,0.272906150057846,0,0,0.962787081228281,0.639337125799041,0,0,0.852449501065388,1.16083695451434,0,0.622822248995575,0.502497330513487,0,0,0,0.368277635987565,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0.764546456250458,1.32171328579026,1.12101712596307,1.31692042387539,0.196709770113833,1.57204305099666,0.411202997999018,0.83593247695339,0.32592226663359,0.473447805734733,1.94826728407911,2.78526142212934,0.294605907474837,0.443067789167242,0.812411591295047,2.5618263945135,2.21100890851793,4.1109476150919,3.03985019564433,2.60822777161547,0.444859689486181,0.267540828089713,0,0.906474741580529,0,0,0.506039384039006,0.637130828648193,0,0,0.150575119077773,0,0,0.236777252044017,0,2.01606743224732,2.67440195783507,2.02754165435919,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.174129737299267,0,0,0.571994910780128,1.48583000531826,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9195036841956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,184.748714210979,11.8865385917855,3.52457796419313,1.29707958075265,2.27236380167484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81089489577993,4.13764596424047,1.2937654491571,2.69520376187472,0,0,0,0,0,0.749007023947182,5.9832291840805,7.87389475528467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,1.07857100409308,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.522870902049801,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.714695326373367,0.411362273086194,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,2.78704762688578,0.577076851905779,30.4487089531212,13.5512331819499,11.974762285969,6.70268795463284,14.393803625224,17.529584774826,5.33514638415572,7.30350972906215,10.1841932252465,5.01268954180134,4.74016977844489,8.67175605559977,6.86119004449562,7.23938604073555,2.74804275804612,6.75929681478608,6.03925491309523,8.17560794388352,10.3555690563081,15.8691519120288,0,3.51592382018778,22.9819657918496,14.098700508785,0,0,0,5.6836125981514,0,0,0,0,0,0,0,11.0418595731929,0,0.597743964753209,1.38141957765574,0,0,1.10776324914963,0,0,0,4.09257896181497,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,18.994611023798,19.114343418518,13.3101439764137,12.9401272649708,12.754440610164,4.93359705082881,16.370467634979,0,0,0,0,0,0.176915129006678,0,9.4886761177799,8.89660360414821,7.62280231389824,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0.869767748958028,0,0,0,0,0,0,0,3.83239764200917,0,5.5206344398656,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,1.6087933092499,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,7.47041938818985,0,0,0,1.32506888912221,0,0,0,0,0.106787412567695,0.157204305099666,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.265729680626726,0,0,0,0,1.79988656269437,12.4829323742145,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49837315502381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61327582578091,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.644578879735772,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0,0.535928260312357,0,0,0.213233981900981,0.714193294391221,2.45437857376823,5.21427600085206,0,0,0,0,0,0.740872583160463,0,0,0,0,0,0,0,0,0.406896178315738,0,0.603821380773079,0.641136984606466 | ||
|short_description=p2@PTPN7 | |short_description=p2@PTPN7 | ||
}} | }} |
Latest revision as of 20:03, 19 September 2015
Short description: | p2@PTPN7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PTPN7_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000367279, NM_080588, uc001gxl.1_5end |
EntrezGene: | PTPN7 |
HGNC: | 9659 |
UniProt: | P35236 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 8.71e-58 | 177 |
hematopoietic stem cell | 1.10e-55 | 168 |
hematopoietic oligopotent progenitor cell | 4.95e-48 | 161 |
hematopoietic multipotent progenitor cell | 4.95e-48 | 161 |
myeloid cell | 2.32e-30 | 108 |
common myeloid progenitor | 2.32e-30 | 108 |
leukocyte | 6.18e-19 | 136 |
mesenchymal cell | 8.41e-17 | 354 |
connective tissue cell | 3.98e-16 | 361 |
lymphocyte | 1.59e-15 | 53 |
common lymphoid progenitor | 1.59e-15 | 53 |
lymphoid lineage restricted progenitor cell | 2.27e-14 | 52 |
motile cell | 9.28e-14 | 386 |
granulocyte | 9.11e-13 | 8 |
blood cell | 6.89e-12 | 11 |
stem cell | 1.05e-11 | 441 |
mast cell | 1.80e-11 | 5 |
basophil mast progenitor cell | 1.80e-11 | 5 |
multi fate stem cell | 6.86e-11 | 427 |
somatic stem cell | 1.69e-10 | 433 |
T cell | 1.78e-10 | 25 |
pro-T cell | 1.78e-10 | 25 |
hematopoietic lineage restricted progenitor cell | 3.93e-09 | 120 |
nongranular leukocyte | 9.62e-09 | 115 |
natural killer cell | 5.29e-07 | 3 |
pro-NK cell | 5.29e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.30e-15 | 371 |
Ontology term | p-value | n |
---|---|---|
leukemia | 2.09e-77 | 39 |
hematologic cancer | 1.51e-73 | 51 |
immune system cancer | 1.51e-73 | 51 |
myeloid leukemia | 1.40e-64 | 31 |
organ system cancer | 2.94e-19 | 137 |
chronic leukemia | 3.00e-19 | 8 |
lymphoma | 1.66e-07 | 10 |
cancer | 9.14e-07 | 235 |